View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4844_low_7 (Length: 214)
Name: NF4844_low_7
Description: NF4844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4844_low_7 |
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| [»] scaffold0047 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 30833452 - 30833626
Alignment:
| Q |
19 |
tatgtcacataaatgtctggataatacatgtctaatgtctattagggtaggcaaaatatcannnnnnnnnnccctgagatgcatctcgttatgcatatgc |
118 |
Q |
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| T |
30833452 |
tatgtcacataaatgtctggataatacatgtctaatgtctattaggttagg--------------ttttttccctgagatgaatctcgttatgcatatgc |
30833537 |
T |
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| Q |
119 |
agaagatatagagtaaaattgtttcataacagaagaggaattcaatatttaattgatagaaacatgtgctttggaagaataatatacccac |
209 |
Q |
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| T |
30833538 |
agaagatatggagtaaaattgtttcataacagaagaggaattcaatatttaattgatagaa--atgtgctttagaagcataataaacccac |
30833626 |
T |
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Target: scaffold0047 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 31 - 141
Target Start/End: Original strand, 61482 - 61592
Alignment:
| Q |
31 |
atgtctggataatacatgtctaatgtctattagggtaggcaaaatatcannnnnnnnnnccctgagatgcatctcgttatgcatatgcagaagatataga |
130 |
Q |
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| T |
61482 |
atgtctggataatacatgtctaacgtctattagggtaggcaaaaccacatttttttcccgctgtagatgcatctcgttatgcatatgcagaagatatgga |
61581 |
T |
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| Q |
131 |
gtaaaattgtt |
141 |
Q |
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| T |
61582 |
gtaaaattgtt |
61592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 18852233 - 18852288
Alignment:
| Q |
19 |
tatgtcacataaatgtctggataatacatgtctaatgtctattagggtaggcaaaa |
74 |
Q |
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| T |
18852233 |
tatgtaacataaatgtttggataatacatgtataatgtctattaggataggcaaaa |
18852288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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