View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4845-Insertion-11 (Length: 256)
Name: NF4845-Insertion-11
Description: NF4845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4845-Insertion-11 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 7 - 256
Target Start/End: Original strand, 38580815 - 38581064
Alignment:
| Q |
7 |
aaaaactaagcatacttataagataatcaagtaattgagttcaaatggttaatgagtttcaccacgaacgaatcgttcagaagaatctgaactcgaatct |
106 |
Q |
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| T |
38580815 |
aaaaactaagcatacttataagataaccaagcaattgagttcaaatggttaatgagtttcaccacgaacgaatcgttcagaagaatctgaactcgaatct |
38580914 |
T |
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| Q |
107 |
tggatgaaacaattctttgttagactttacttatctctcaactgaacttcagattatcataattcttttcctcttaaaataggagattaacaacagcaaa |
206 |
Q |
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| T |
38580915 |
tggatagaacaattctttattagactttacttatctctcaactgaactttagattatcatgattcttttcctcttaaaataggagattaacaacaacaaa |
38581014 |
T |
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| Q |
207 |
aatgcctagatgtaatttggaaaagtttaggtattatgtcactacattaa |
256 |
Q |
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| T |
38581015 |
aatgcctagatgtaatttggaaagttttaggtattatgtcactacattaa |
38581064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 4061499 - 4061415
Alignment:
| Q |
39 |
aattgagttcaaatggttaatgagtttcaccacgaacgaatcgttcagaagaatctgaactcgaatcttggatgaaacaattctt |
123 |
Q |
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| T |
4061499 |
aattgagctcaattggttaatgagtttcaccaagaacgaattgttcaagagaatctgaatttgattcttcggtggaacaattctt |
4061415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 4661951 - 4661906
Alignment:
| Q |
122 |
tttgttagactttacttatctctcaactgaacttcagattatcata |
167 |
Q |
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| T |
4661951 |
tttgttagactttacttatcttgcaaccgaacttcagattatcata |
4661906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 4669579 - 4669639
Alignment:
| Q |
31 |
aatcaagtaattgagttcaaatggttaatgagtttcaccacgaacgaatcgttcagaagaa |
91 |
Q |
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| T |
4669579 |
aatcaagcaattgggttcaagtggttaatgagttccaccaagaatgaattgtttagaagaa |
4669639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 67
Target Start/End: Original strand, 26172731 - 26172764
Alignment:
| Q |
34 |
caagtaattgagttcaaatggttaatgagtttca |
67 |
Q |
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| T |
26172731 |
caagtaattgagttcaagtggttaatgagtttca |
26172764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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