View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4845-Insertion-2 (Length: 930)
Name: NF4845-Insertion-2
Description: NF4845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4845-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 746; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 746; E-Value: 0
Query Start/End: Original strand, 8 - 928
Target Start/End: Complemental strand, 44610300 - 44609380
Alignment:
| Q |
8 |
aaaaacttaccatgaattctattgcagcacttattaagtagatggaataagtagtgaaaaaagcatctgcaagaaatccaccaagaatagcaagtaggaa |
107 |
Q |
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| T |
44610300 |
aaaaacttaccatgaattctattgcagcacttattaagtagatggaataagtagtgaaaaaagcatctgcaagaaatccaccaagaatagcaagtaggaa |
44610201 |
T |
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| Q |
108 |
agctgttcccatgaagttggtgacaatgttggcagaggtagaaggtgaaaagtgcataaacttggaaaggtataaaacaaggttgcttgcatttgcaaga |
207 |
Q |
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| T |
44610200 |
agctgttcccatgaagttggtgacaatgttggcagaggtagaaggtgaaaagtgcataaacttggaaaggtataaaacaaggttgcttgcatttgcaaga |
44610101 |
T |
|
| Q |
208 |
tatgctaggttctccaatacctccacagctgcagaaaaattataatatgttatttgtatgtgtatatatccttacaaaacatccattatagaaagnnnnn |
307 |
Q |
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| T |
44610100 |
tatgctaggttctccaatacctccacagctgcagaaaaattataatatgttatgtgtgtgtgtatat--ccttacaaaacatccattatagaaagatttt |
44610003 |
T |
|
| Q |
308 |
nnnnnnnnnnnaagtatagtttggacttgatgtacatagtactataacattgtaggttaattaacattttggaaatcaatgaaacataaaagaaattaat |
407 |
Q |
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| T |
44610002 |
ttattttttttaagtatagtttggacttgaggtacatagtactataacattgtaggttaattaacattttggaaatcaatgaaacataaaagaaattaat |
44609903 |
T |
|
| Q |
408 |
gtgattgtactaacccaaaacataggaggcagcaagcattccaccgtgatgtcctttgatggctggtctgttcctccaatctacatagccttcccaaact |
507 |
Q |
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| T |
44609902 |
gtgattgtactaacccaaaacataggaggcagcaagcattccaccgtgatgtcctttgatggctggtctgttcctccaatctacatagccttcccaaact |
44609803 |
T |
|
| Q |
508 |
tgcacccttccttcttcctagc-aaaataaattaaatttggagttaaaattaatttaatacaatactagaaacaaatagactaagagtggaataaatata |
606 |
Q |
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| T |
44609802 |
tgcacccttccttcttcctagcaaaaataaattaaatttggtgttaaaattaaattaatacaatactagaaacaaatagactaagagtggaataaatata |
44609703 |
T |
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| Q |
607 |
ggaaa-gttctaccatatctnnnnnnnnnnnnnnnnnnnnngggatagtggtggcagaatagttaatttgatgaagagcactttctattatgttggaagt |
705 |
Q |
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| T |
44609702 |
ggaaaggttctaccatatctatttatttttatctttaatttgggatagtggtggcagaatagttaatttgatgaagagcactttctattatgttggaagt |
44609603 |
T |
|
| Q |
706 |
gataaaaagaaactgaatttatagatggggaaatggaatttctgatagatgaggaaaggtctagactttttgaaagcaaccattcattctcatgaatctt |
805 |
Q |
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| T |
44609602 |
gataaaaataaactgaatttatagatggggaaatggaatttctgatagatgaggaaaggtctagactttttgaaagcaaccattcattctcatgaatctt |
44609503 |
T |
|
| Q |
806 |
tttacctttctttaatttaatggtgatgttgaatgtttctactgttacctcactcttaaatttcttgtttttctttcattccttcatcatatcatgga-g |
904 |
Q |
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| T |
44609502 |
tttacctttctttaatttaatggtgatgttgaatgtttctactgttacctcactctt-aatttcttgtttttctttcattccttcatcatatcatggagg |
44609404 |
T |
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| Q |
905 |
tgtggtgttgctgattgatattcc |
928 |
Q |
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|||||||||||||||||||||||| |
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| T |
44609403 |
tgtggtgttgctgattgatattcc |
44609380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 246
Target Start/End: Original strand, 25177207 - 25177419
Alignment:
| Q |
34 |
gcacttattaagtagatggaataagtagtgaaaaaagcatctgcaagaaatccaccaagaatagcaagtaggaaagctgttcccatgaagttggtgacaa |
133 |
Q |
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|||||||| | ||||||| |||||| |||||||| ||||| | | ||| |||||||| | |||||| || ||||||||||||||||| || || ||| |
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| T |
25177207 |
gcacttatcaggtagatgtgataagttgtgaaaaatgcatcagataaaaaaccaccaagcaaagcaagaagaaaagctgttcccatgaaatttgtcacat |
25177306 |
T |
|
| Q |
134 |
tgttggcagaggtagaaggtgaaaagtgcataaacttggaaaggtataaaacaaggttgcttgcatttgcaagatatgctaggttctccaatacctccac |
233 |
Q |
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|||| ||||| | || ||||||||||||||| | || || ||||| || | ||||||||||||||| ||| |||| || ||||| | |||||||| |
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| T |
25177307 |
tgttagcagattttgatggtgaaaagtgcatatatttccttagatataacaccaagttgcttgcatttgctagaaatgcaagattctctagcacctccac |
25177406 |
T |
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| Q |
234 |
agctgcagaaaaa |
246 |
Q |
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| T |
25177407 |
cactgcataaaaa |
25177419 |
T |
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Back To:
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