View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4845-Insertion-4 (Length: 739)

Name: NF4845-Insertion-4
Description: NF4845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4845-Insertion-4
NF4845-Insertion-4
[»] chr4 (1 HSPs)
chr4 (8-739)||(54014840-54015558)


Alignment Details
Target: chr4 (Bit Score: 628; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 628; E-Value: 0
Query Start/End: Original strand, 8 - 739
Target Start/End: Original strand, 54014840 - 54015558
Alignment:
Q  8 gttgaagaatccttcgatttctagtaagaaaaagcatgttactataagaactccaaaacacgtgtagtagaattcttagaccacatagtacgagcaaatg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  54014840 gttgaagaatccttcgatttctagtaagaaaaagcatgttactataagaactccaaaacacgtgtagtagagttcttagaccacatagtacgagcaaatg 54014939  T
Q  108 aatgcaccaccagctgaggttggagtatgagggttcttcattcaaaatttcatacaatactttccccacaattggtccatataatacatactacaattta 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54014940 aatgcaccaccagctgaggttggagtatgagggttcttcattcaaaatttcatacaatactttccccacaattggtccatataatacatactacaattta 54015039  T
Q  208 aaataacaaagaaacatacatacatgttattgccacaaaagaatttgttttatcataataaaagagaaacatacatagatgttatttatgtaccttgaat 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54015040 aaataacaaagaaacatacatacatgttattgccacaaaagaatttgttttatcataataaaagagaaacatacatagatgttatttatgtaccttgaat 54015139  T
Q  308 attccaaagctttcccatggccatgatgataaaggagcccccatcttctatactaataat-tttttagtaccnnnnnnnnnnnnnngtagtaataggctt 406  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||              ||||||||||||||    
T  54015140 attccaaagttttcccatggccatgatgataaaggagcccccatcttctatactaataataattttagtacc-------tttttttgtagtaataggctt 54015232  T
Q  407 gatctatttgttgttttatacgaacacaaaaagagtccaaaaattatattacttgccaagagaaggaaaagggaggattaaaatacccaaaatagaataa 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54015233 gatctatttgttgttttatacgaacacaaaaagagtccaaaaattatattacttgccaagagaaggaaaagggaggattaaaatacccaaaatagaataa 54015332  T
Q  507 attagaaaggaagggataagcaaccaatgggtatgtatgtaggataggtttggggtttggtagtgcaatgaaattgtttccttgttaatgggaaagtaaa 606  Q
    || |||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  54015333 atcagaaaggaagggataagcaaccaatgggtatgtatgtaggata-------ggtttggtagtgcaatgaaattgtttccttgttaatgggaaagtaaa 54015425  T
Q  607 gtagtgtatctctctggatttgaaccgtaactttgttaagtatctacctacactctccaatcatatcgcatatttataaggagaatggggttatgttgtc 706  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  54015426 gtagtgtatctctctggatttgaaccgtaactttgttaagtatctacctacactctccaatcacatcgcatatttataaggagaatggggctatgttgtc 54015525  T
Q  707 aatacaatacagttaagtggtctcccacatgtc 739  Q
    |||||||||||||||||||||||||||||||||    
T  54015526 aatacaatacagttaagtggtctcccacatgtc 54015558  T

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