View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4845-Insertion-5 (Length: 706)
Name: NF4845-Insertion-5
Description: NF4845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4845-Insertion-5 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 414 - 706
Target Start/End: Original strand, 40464099 - 40464394
Alignment:
| Q |
414 |
ggttatatttttagtctataatagaccatcaaaatttaccaacacatatatgaccaataatatttattagtatctcttatatactaaatcatagtagtga |
513 |
Q |
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| T |
40464099 |
ggttatatttttagtctataatagaccatcaaaatttaccaaaacatatatgaccaataatatttactagtatctcttatatactacatcgtagtagtga |
40464198 |
T |
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| Q |
514 |
ttcactaagttttgaaatgattcacaagtttaatagtggattcagcacccttacatttatagatatacacctag-tcacgcggttagaatatcagtgccc |
612 |
Q |
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| T |
40464199 |
ttcactaatttttggaatgattcacaagtttaatagtggattcagcacccttacatttatagagatacccctagttcacgcggttagaatatcagtgccc |
40464298 |
T |
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| Q |
613 |
atttaatc-aatattagaaggtctaaattaaaatttacattttatggaattgtctaa-tttgatt-aatgactaccaatgttgttacaactgcatga |
706 |
Q |
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| T |
40464299 |
atttaatcaaatattagaaggtctaaattaaaatttacattttat-gaattgtctaattttgattaaacgactgccaatgttgtcacaactgcatga |
40464394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 7 - 218
Target Start/End: Original strand, 40463703 - 40463914
Alignment:
| Q |
7 |
aagatgttgtcaatgattattttagtcgtcatgttatgtgtaattcatcttaaaggagacctgcaccacttttgcaaattccaaataaaatttaagtgct |
106 |
Q |
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| T |
40463703 |
aagatgttgtcaatgattattttagtcgtcatgttatgtgtaattcatcttaaaggaaacctgcaccactcttgcaaattccaaataaaatttaagtgct |
40463802 |
T |
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| Q |
107 |
ttccaacaaaaagtggggaaaaaattgattatatatttttcatttcgtctctaatttaaaaataaaaacactatgatttgcagttggtacgtcacaagtg |
206 |
Q |
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| T |
40463803 |
ttccaacaaaaagtggggaaaaaattgattatatatttttcatttcgtctctaatttaaaaataaaaacactatgatttgaagttggtacgtcacaagtg |
40463902 |
T |
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| Q |
207 |
gaaactttgtgc |
218 |
Q |
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| T |
40463903 |
gaaactttgtgc |
40463914 |
T |
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