View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4845-Insertion-6 (Length: 621)
Name: NF4845-Insertion-6
Description: NF4845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4845-Insertion-6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 604; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 6 - 621
Target Start/End: Complemental strand, 35916148 - 35915533
Alignment:
| Q |
6 |
cacttctagggcttccaaaggaagaagaacgagccccaagggatgaagcacgactttgaggtgtagaaacagggcttggtgacaaacctctattaacagc |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35916148 |
cacttctagggcttccaaaggaagaagaacgagccccaagggatgaagcacgactttgaggtgtagaaacagggcttggtgacaaacctctattaacagc |
35916049 |
T |
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| Q |
106 |
aaaataaagatcaagggcaggcaatgtattacacaatctctgaccatcttcttcattgaatccaaacccaagttcaatgcatcctttaagttcatgcaaa |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35916048 |
aaaataaagatcaagggcaggcaatgtattacacaatctctgaccatcttcttcattgaatccaaacccaagttcaatgcatcctttaagttcatgcaaa |
35915949 |
T |
|
| Q |
206 |
tcatcatcagttatatcatcacaaacacaatcttgaacaatactcctccttatttcttgtctcctccttctctcccaagccatatctctcggcttctcgc |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35915948 |
tcatcatcagttatatcatcacaaacacaatcttgaacaatactcctccttatttcttgtctcctccttctctcccaagccatatctctcggcttctcgc |
35915849 |
T |
|
| Q |
306 |
acatcgatagctgcttcgatagcctcctcctattgtcccacgccaccggcgccaatggcatgtgctgcaactcctcctctgattcgcttggtagcggaga |
405 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
35915848 |
acatcgatagctgcttcgatagcctcctcctattgttccacgccaccggcgccaatggcatgtgctgcaactcctcctccgattcgcttggtagcggaga |
35915749 |
T |
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| Q |
406 |
agaagatgaagataatgacattttgtcacacttttgctcttctttgttcatagctacaagtaattattgtatatctttaacaacagattgaaagtgttaa |
505 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
35915748 |
agaagatgaagataatgacattttgtcacacttttgctcttctttgttcatagctacaaataattattgtatatctttaacaacagattgaaagtgttaa |
35915649 |
T |
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| Q |
506 |
ttttaatttgatgaaaatgatgatggctgaggcagcaagcaagcgggggccgtcttgcgttgcctcgccgcgccgttgaagtggtggtaagtggaatagg |
605 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35915648 |
ttttaatttgatgaaaatgatgatggctgaggcagcaagcaagcgggggccgtcttgcgttgcctcgccgcgccgttgaagtggtggtaagtggaatagg |
35915549 |
T |
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| Q |
606 |
aaaaaatggaaggaag |
621 |
Q |
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| T |
35915548 |
aaaaaatggaaggaag |
35915533 |
T |
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