View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4845-Insertion-8 (Length: 513)

Name: NF4845-Insertion-8
Description: NF4845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4845-Insertion-8
NF4845-Insertion-8
[»] chr5 (4 HSPs)
chr5 (8-513)||(7524511-7525012)
chr5 (466-513)||(1716515-1716562)
chr5 (469-513)||(3643640-3643684)
chr5 (473-513)||(4103249-4103289)
[»] chr1 (22 HSPs)
chr1 (151-513)||(38175593-38175975)
chr1 (461-513)||(14676624-14676676)
chr1 (461-513)||(14683742-14683794)
chr1 (462-513)||(14654403-14654454)
chr1 (462-513)||(14664194-14664245)
chr1 (462-513)||(14669772-14669823)
chr1 (462-513)||(14706081-14706132)
chr1 (462-513)||(14708571-14708622)
chr1 (462-513)||(14716284-14716335)
chr1 (462-513)||(28366262-28366313)
chr1 (462-513)||(33988063-33988114)
chr1 (465-513)||(14674477-14674525)
chr1 (465-513)||(14679855-14679903)
chr1 (24-81)||(38176077-38176136)
chr1 (466-513)||(14667174-14667221)
chr1 (462-513)||(14681592-14681643)
chr1 (469-513)||(14652525-14652569)
chr1 (469-513)||(14662316-14662360)
chr1 (99-142)||(38176033-38176075)
chr1 (472-513)||(11872544-11872585)
chr1 (465-510)||(28698549-28698594)
chr1 (475-507)||(37422175-37422207)
[»] chr4 (13 HSPs)
chr4 (146-504)||(49533697-49534064)
chr4 (8-142)||(49534095-49534231)
chr4 (8-140)||(49109160-49109293)
chr4 (376-513)||(49106592-49106730)
chr4 (378-513)||(50077262-50077397)
chr4 (376-513)||(49108696-49108834)
chr4 (462-513)||(3461205-3461256)
chr4 (466-513)||(11652455-11652502)
chr4 (470-513)||(26984730-26984773)
chr4 (470-513)||(26998803-26998846)
chr4 (470-513)||(48205832-48205875)
chr4 (476-513)||(26982549-26982586)
chr4 (474-510)||(34481155-34481191)
[»] chr8 (10 HSPs)
chr8 (293-513)||(40054128-40054356)
chr8 (462-513)||(41841215-41841266)
chr8 (463-513)||(44878977-44879027)
chr8 (463-513)||(44880894-44880944)
chr8 (462-512)||(42872514-42872564)
chr8 (466-513)||(10944462-10944509)
chr8 (471-513)||(37679757-37679799)
chr8 (469-513)||(37682057-37682101)
chr8 (462-512)||(42220909-42220959)
chr8 (462-513)||(42555146-42555197)
[»] chr2 (19 HSPs)
chr2 (282-513)||(43849851-43850093)
chr2 (462-513)||(8973305-8973356)
chr2 (462-513)||(8979315-8979366)
chr2 (462-513)||(9023440-9023491)
chr2 (462-513)||(9026779-9026830)
chr2 (462-513)||(30732001-30732052)
chr2 (463-513)||(32918074-32918124)
chr2 (461-510)||(8984685-8984734)
chr2 (466-513)||(9008018-9008065)
chr2 (462-513)||(9032046-9032097)
chr2 (468-513)||(2841080-2841125)
chr2 (462-513)||(9020840-9020891)
chr2 (466-513)||(30733985-30734032)
chr2 (462-513)||(9030391-9030442)
chr2 (471-513)||(19232462-19232504)
chr2 (462-510)||(8988448-8988496)
chr2 (466-510)||(8992145-8992189)
chr2 (466-513)||(9016490-9016537)
chr2 (472-507)||(39814115-39814150)
[»] chr6 (4 HSPs)
chr6 (378-513)||(10795953-10796088)
chr6 (378-513)||(10791715-10791850)
chr6 (469-513)||(30521242-30521286)
chr6 (471-513)||(8875691-8875733)
[»] chr3 (1 HSPs)
chr3 (471-513)||(15758566-15758608)


Alignment Details
Target: chr5 (Bit Score: 449; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 8 - 513
Target Start/End: Original strand, 7524511 - 7525012
Alignment:
Q  8 tataagatattgcatggacacaatagctgatattggtggaagcaaaactcagttcctcttatctgaattaaggggtgatcttcagcatatttagggcagt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7524511 tataagatattgcatggacacaatagctgatattggtggaagcaaaactcagttcctcttatctgaattaaggggtgatcttcagcatatttagggcagt 7524610  T
Q  108 gtttgtagctttgaagtaatattatctgaattggttggttgggaagagtcataagttatcaagtgttacctgattgtgaacatagccttcaacttctgag 207  Q
    ||||||||||||||||||||||| ||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7524611 gtttgtagctttgaagtaatattgtctgaattgg----ttgggaagagtcataagttatcaagtgttacctgattgtgaacatagccttcaacttctgag 7524706  T
Q  208 atatgattgattgcatagtttgtgaaattatgtgtgtgtggcctcatagtttgtatgattgattttaatttgagatatgatatttatttaccattttgat 307  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7524707 atatgattgattgcatagtttgcgaaattatgtgtgtgtggcctcatagtttgtatgattgattttaatttgagatatgatatttatttaccattttgat 7524806  T
Q  308 aatggaggcatcacgttaaaaatttaagggaaacgaaacttagcagctgataaacggaagtggtgtgtaaggtggtgctgcataaaaggcccacatcggg 407  Q
    | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  7524807 actggaggcatcacgttaaaaatttaagggaaacgaaacttagcagcagataaacggaagtggtgtgtaaggtggtgctgcataaaagtcccacatcggg 7524906  T
Q  408 taatgaagaaaataactgagtagacagtggatataaaagcaatgcaaggtctcatttcaactcatacctttctcggccttttggctaagatcaagtgtag 507  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |  |||||| |||||||||||||||||||||||||||||||||||||||    
T  7524907 taatgaagaaaagaactgagtagacagtggatataaaagcaatgcaaggtgttgtttcaagtcatacctttctcggccttttggctaagatcaagtgtag 7525006  T
Q  508 tatctg 513  Q
    ||||||    
T  7525007 tatctg 7525012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 466 - 513
Target Start/End: Complemental strand, 1716562 - 1716515
Alignment:
Q  466 aactcatacctttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1716562 aactcatacctttctcggccttttggctaagatcaagtgtagtatctg 1716515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 469 - 513
Target Start/End: Original strand, 3643640 - 3643684
Alignment:
Q  469 tcatacctttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  3643640 tcatacctttctcggccttttggctaagatcaagtgtagtatctg 3643684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 473 - 513
Target Start/End: Original strand, 4103249 - 4103289
Alignment:
Q  473 acctttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    ||||||||| || |||||| |||||||||||||||||||||    
T  4103249 acctttctcagcattttggttaagatcaagtgtagtatctg 4103289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 151 - 513
Target Start/End: Complemental strand, 38175975 - 38175593
Alignment:
Q  151 aagagtcataagttatcaagtg--ttacctgattgtgaacatagccttcaacttctgagatatgattgattgcatagtttgtgaaattatgtgtgtgtgg 248  Q
    ||||||||||||||||||||||  || |||| |||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||| |||||||||||    
T  38175975 aagagtcataagttatcaagtgaattccctggttgtgaacatagccatcaacttcttagatatgattgattgcatagtttgtaaaattttgtgtgtgtgg 38175876  T
Q  249 cctcatagtttgtatgattgattttaatttgagatatgatatttatttaccattttgataatggaggcatcacgttaaaaatttaagggaaacgaaactt 348  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||    
T  38175875 cctcatagtttgtatgattgattttaatttgagatatgatatttatttaccattttgatgccggaggcatcacgttaaaaatttaagggaaacgaaactt 38175776  T
Q  349 agcagctgataaacggaagtggtgtgt-----------------aaggtggtgctgcataaaaggcccacatcgggtaatgaagaaaataactgagtaga 431  Q
    |||||| ||||||||| |||||||| |                 |||||||| ||||||| ||| ||||||||||||||||||||||  |||| |||| |    
T  38175775 agcagcagataaacgggagtggtgtataagtaagagtcggtcacaaggtggtactgcatataagtcccacatcgggtaatgaagaaagaaactaagtata 38175676  T
Q  432 cagtggatataaaagca-atgcaaggtctcatttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    ||||  ||||||||||| |||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38175675 cagttcatataaaagcagatgcgaggcttcatttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctg 38175593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 461 - 513
Target Start/End: Original strand, 14676624 - 14676676
Alignment:
Q  461 atttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14676624 atttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctg 14676676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 461 - 513
Target Start/End: Original strand, 14683742 - 14683794
Alignment:
Q  461 atttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14683742 atttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctg 14683794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 462 - 513
Target Start/End: Complemental strand, 14654454 - 14654403
Alignment:
Q  462 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14654454 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctg 14654403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 462 - 513
Target Start/End: Complemental strand, 14664245 - 14664194
Alignment:
Q  462 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14664245 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctg 14664194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 462 - 513
Target Start/End: Complemental strand, 14669823 - 14669772
Alignment:
Q  462 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14669823 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctg 14669772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 462 - 513
Target Start/End: Original strand, 14706081 - 14706132
Alignment:
Q  462 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14706081 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctg 14706132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 462 - 513
Target Start/End: Original strand, 14708571 - 14708622
Alignment:
Q  462 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14708571 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctg 14708622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 462 - 513
Target Start/End: Original strand, 14716284 - 14716335
Alignment:
Q  462 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14716284 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctg 14716335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 462 - 513
Target Start/End: Complemental strand, 28366313 - 28366262
Alignment:
Q  462 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28366313 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctg 28366262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 462 - 513
Target Start/End: Original strand, 33988063 - 33988114
Alignment:
Q  462 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33988063 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctg 33988114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 465 - 513
Target Start/End: Original strand, 14674477 - 14674525
Alignment:
Q  465 caactcatacctttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14674477 caactcatacctttctcggccttttggctaagatcaagtgtagtatctg 14674525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 465 - 513
Target Start/End: Original strand, 14679855 - 14679903
Alignment:
Q  465 caactcatacctttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14679855 caactcatacctttctcggccttttggctaagatcaagtgtagtatctg 14679903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 38176136 - 38176077
Alignment:
Q  24 gacacaatagctgatattggtggaagcaaaactc--agttcctcttatctgaattaaggg 81  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  38176136 gacacaatagctgatattggtggaagcaaaactcagagttcctcttatctgaattaaggg 38176077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 466 - 513
Target Start/End: Complemental strand, 14667221 - 14667174
Alignment:
Q  466 aactcatacctttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14667221 aactcatacctttctcggccttttggctaagatcaagtgtagtatctg 14667174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 462 - 513
Target Start/End: Original strand, 14681592 - 14681643
Alignment:
Q  462 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14681592 tttcaacttatacctttctcggccttttggctaagatcaagtgtagtatctg 14681643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 469 - 513
Target Start/End: Original strand, 14652525 - 14652569
Alignment:
Q  469 tcatacctttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  14652525 tcatacctttctcggccttttggctaagatcaagtgtagtatctg 14652569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 469 - 513
Target Start/End: Original strand, 14662316 - 14662360
Alignment:
Q  469 tcatacctttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  14662316 tcatacctttctcggccttttggctaagatcaagtgtagtatctg 14662360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 99 - 142
Target Start/End: Complemental strand, 38176075 - 38176033
Alignment:
Q  99 tagggcagtgtttgtagctttgaagtaatattatctgaattggt 142  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  38176075 tagggcagtgtttgtagctttgaagt-atattatctgaattggt 38176033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 472 - 513
Target Start/End: Complemental strand, 11872585 - 11872544
Alignment:
Q  472 tacctttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    ||||||||||||||||||| ||||||||||||||| ||||||    
T  11872585 tacctttctcggccttttgactaagatcaagtgtactatctg 11872544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 465 - 510
Target Start/End: Original strand, 28698549 - 28698594
Alignment:
Q  465 caactcatacctttctcggccttttggctaagatcaagtgtagtat 510  Q
    |||||||||| |||||||| ||||||||||||||||| ||||||||    
T  28698549 caactcatacatttctcggtcttttggctaagatcaaatgtagtat 28698594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 475 - 507
Target Start/End: Original strand, 37422175 - 37422207
Alignment:
Q  475 ctttctcggccttttggctaagatcaagtgtag 507  Q
    |||||||||||||||||||||||||||||||||    
T  37422175 ctttctcggccttttggctaagatcaagtgtag 37422207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 147; Significance: 3e-77; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 146 - 504
Target Start/End: Complemental strand, 49534064 - 49533697
Alignment:
Q  146 ttgggaagagtcataagttatcaagtg--ttacctgattgtgaacatagccttcaacttctgagatatgattgattgcatagtttgtgaaattatgtgtg 243  Q
    |||||||||| |||||||||| |||||  || |||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||| ||||||    
T  49534064 ttgggaagagccataagttattaagtgaattccctgattgtgaacatagctttcaacttctgagatatgaatgattgcatagtttgtaaaattttgtgtg 49533965  T
Q  244 tgtggcctcatagtttgtatgattgattttaatttgagatatgatatttatttaccattttgataatggaggcatcacgttaaaaatt----taagggaa 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||    ||||||||    
T  49533964 tgtggcctcatagtttgtatgattgattttaatttgagatatgatatttatttaccattttaatactggaggcatcacgttaaaattttaagtaagggaa 49533865  T
Q  340 acgaaacttagcagctgataaacggaagtggtgtgt---aaggtggtgctgcataaaaggcccacatcgggtaatgaagaaaataactgagtagacagtg 436  Q
    ||||||| ||||||| |||     | |   ||  ||   ||  |||| ||||||||||| |||||||||| |||||||||||  |||||| ||||||||     
T  49533864 acgaaacatagcagcagatggtgtgtaagagtcagtcacaaaatggtactgcataaaagtcccacatcggctaatgaagaaagaaactgattagacagtt 49533765  T
Q  437 gatataaaagca-atgcaaggtctcatttcaactcatacctttctcggccttttggctaagatcaagtg 504  Q
    ||||||||| || | || ||  || ||| |||| ||||||||||||||||  |||||||||||||||||    
T  49533764 gatataaaaccagaagccagcccttattccaacccatacctttctcggcc-cttggctaagatcaagtg 49533697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 8 - 142
Target Start/End: Complemental strand, 49534231 - 49534095
Alignment:
Q  8 tataagatattgcatggacacaatagctgatattggtggaagcaaaactcag--ttcctcttatctgaattaaggggtgatcttcagcatatttagggca 105  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||||||| |||||||||| |||||||    
T  49534231 tataagatattgcttagacacaatagctgatattggtggaagcaaaactcagagttcctcttatatgaattaaggggtgattttcagcatatatagggca 49534132  T
Q  106 gtgtttgtagctttgaagtaatattatctgaattggt 142  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  49534131 gtgtttgtaggtttaaagtaatattatctgaattggt 49534095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 49109293 - 49109160
Alignment:
Q  8 tataagatattgcatggacacaatagctgatattggtggaagcaaaactcag--ttcctcttatctgaattaaggggtgatcttcagcatatttagggca 105  Q
    |||||||||||||   ||||||||||||||||||||||||||||||||| ||  |||||||||||| |||||||||||||||||||| || | |||||||    
T  49109293 tataagatattgctcagacacaatagctgatattggtggaagcaaaactgagacttcctcttatctaaattaaggggtgatcttcag-atctatagggca 49109195  T
Q  106 gtgtttgtagctttgaagtaatattatctgaattg 140  Q
    |||||||||| ||||||||||||||||||||||||    
T  49109194 gtgtttgtaggtttgaagtaatattatctgaattg 49109160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 376 - 513
Target Start/End: Complemental strand, 49106730 - 49106592
Alignment:
Q  376 aaggtggtgctgcataaaaggcccacatcgggtaatgaagaaaataactgagtagacagtggatataaaagca-atgcaaggtctcatttcaactcatac 474  Q
    |||||||| ||||||| ||| ||||||||||||||||||||||  |||||| |||||||| |||||||||||| | || ||    | |||||||||||||    
T  49106730 aaggtggtactgcatataagtcccacatcgggtaatgaagaaaggaactgattagacagttgatataaaagcagaagccagccaccctttcaactcatac 49106631  T
Q  475 ctttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    |||||||||||||||||||||||||||||||||||||||    
T  49106630 ctttctcggccttttggctaagatcaagtgtagtatctg 49106592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 378 - 513
Target Start/End: Complemental strand, 50077397 - 50077262
Alignment:
Q  378 ggtggtgctgcataaaaggcccacatcgggtaatgaagaaaataactgagtagacagtggatataaaagca-atgcaaggtctcatttcaactcatacct 476  Q
    |||||| ||||||| ||| |||| |||||||||||||||||  |||| ||| |||||| |||||||||||| | || || |||  |||||||||||||||    
T  50077397 ggtggtactgcatataagtcccatatcgggtaatgaagaaagaaactaagt-gacagttgatataaaagcagaagccagctcttctttcaactcatacct 50077299  T
Q  477 ttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    |||||||||||||||||||||||||||||||||||||    
T  50077298 ttctcggccttttggctaagatcaagtgtagtatctg 50077262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 376 - 513
Target Start/End: Complemental strand, 49108834 - 49108696
Alignment:
Q  376 aaggtggtgctgcataaaaggcccacatcgggtaatgaagaaaataactgagtagacagtggatataaaagca-atgcaaggtctcatttcaactcatac 474  Q
    |||||||| ||||||| ||| ||||||||||||||| | ||||  |||||| |||||||| ||||||||| || | || ||     ||||||||||||||    
T  49108834 aaggtggtactgcatataagtcccacatcgggtaataaggaaaggaactgaatagacagttgatataaaatcagaagccagcctatatttcaactcatac 49108735  T
Q  475 ctttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    |||||||||||||||||||||||||||||||||||||||    
T  49108734 ctttctcggccttttggctaagatcaagtgtagtatctg 49108696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 462 - 513
Target Start/End: Complemental strand, 3461256 - 3461205
Alignment:
Q  462 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  3461256 tttcaattcatacctttctcggccttttggctaagatcaagtgtagtatctg 3461205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 466 - 513
Target Start/End: Complemental strand, 11652502 - 11652455
Alignment:
Q  466 aactcatacctttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11652502 aactcatacctttctcggccttttggctaagatcaagtgtagtatctg 11652455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 470 - 513
Target Start/End: Complemental strand, 26984773 - 26984730
Alignment:
Q  470 catacctttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  26984773 catacctttctcggccttttggctaagatcaagtgtagtatctg 26984730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 470 - 513
Target Start/End: Complemental strand, 26998846 - 26998803
Alignment:
Q  470 catacctttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  26998846 catacctttctcggccttttggctaagatcaagtgtagtatctg 26998803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 470 - 513
Target Start/End: Original strand, 48205832 - 48205875
Alignment:
Q  470 catacctttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    |||||||||||||||||||| |||||||| ||||||||||||||    
T  48205832 catacctttctcggccttttagctaagattaagtgtagtatctg 48205875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 513
Target Start/End: Original strand, 26982549 - 26982586
Alignment:
Q  476 tttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  26982549 tttctcggcctcttggctaagatcaagtgtagcatctg 26982586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 474 - 510
Target Start/End: Complemental strand, 34481191 - 34481155
Alignment:
Q  474 cctttctcggccttttggctaagatcaagtgtagtat 510  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  34481191 cctttctcagccttttggctaagatcgagtgtagtat 34481155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 1e-57; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 293 - 513
Target Start/End: Original strand, 40054128 - 40054356
Alignment:
Q  293 atttaccattttgataatggaggcatcacgttaaaaatttaagggaaacgaaacttagcagctgataaacggaagtggtgt----gt---aaggtggtgc 385  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| | ||||||    ||   |||||  | |    
T  40054128 atttaccattttgatactggaggcatcacgttaaaaatataagggaaacgaaacttagcagcagataaacgggaatggtgtaatagtcccaaggtactac 40054227  T
Q  386 tgcataaaaggcccacatcgggtaatgaagaaaataactgagtagacagtggatataaaagca-atgcaaggtctcatttcaactcatacctttctcggc 484  Q
    |||||||||| |||||||||  |||||||||||  ||||||||||||| |||||||||||| | |||| ||| ||||||| || ||||||||||||||||    
T  40054228 tgcataaaagtcccacatcgaataatgaagaaaggaactgagtagacactggatataaaagaagatgcgaggcctcattttaattcatacctttctcggc 40054327  T
Q  485 cttttggctaagatcaagtgtagtatctg 513  Q
    |||||||||||||||||||||||||||||    
T  40054328 cttttggctaagatcaagtgtagtatctg 40054356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 462 - 513
Target Start/End: Complemental strand, 41841266 - 41841215
Alignment:
Q  462 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41841266 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctg 41841215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 463 - 513
Target Start/End: Original strand, 44878977 - 44879027
Alignment:
Q  463 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44878977 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctg 44879027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 463 - 513
Target Start/End: Complemental strand, 44880944 - 44880894
Alignment:
Q  463 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44880944 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctg 44880894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 462 - 512
Target Start/End: Complemental strand, 42872564 - 42872514
Alignment:
Q  462 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatct 512  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  42872564 tttcaactcatacctttctcggccttttggctaagattaagtgtagtatct 42872514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 466 - 513
Target Start/End: Complemental strand, 10944509 - 10944462
Alignment:
Q  466 aactcatacctttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10944509 aactcatacctttctcgaccttttggctaagatcaagtgtagtatctg 10944462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 471 - 513
Target Start/End: Original strand, 37679757 - 37679799
Alignment:
Q  471 atacctttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  37679757 atacctttctcggccttttggctaagatcaagtgtagtatctg 37679799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 469 - 513
Target Start/End: Original strand, 37682057 - 37682101
Alignment:
Q  469 tcatacctttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    |||||| ||||||||||||||||||||||||||||||||||||||    
T  37682057 tcatacatttctcggccttttggctaagatcaagtgtagtatctg 37682101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 462 - 512
Target Start/End: Complemental strand, 42220959 - 42220909
Alignment:
Q  462 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatct 512  Q
    ||||||||||||| ||| |||| ||||||||||||||||||||||||||||    
T  42220959 tttcaactcatacatttttcggtcttttggctaagatcaagtgtagtatct 42220909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 462 - 513
Target Start/End: Complemental strand, 42555197 - 42555146
Alignment:
Q  462 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    ||||||||||||||||||| |  |||||||||||||||||||| || |||||    
T  42555197 tttcaactcatacctttcttgatcttttggctaagatcaagtgcagaatctg 42555146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 3e-43; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 282 - 513
Target Start/End: Original strand, 43849851 - 43850093
Alignment:
Q  282 atatgatatttatttaccattttgataatggaggcatcacgttaaaaatttaag----ggaaacgaaacttagcagctgataaacggaagtggtgtgtaa 377  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||||||||    ||| ||||||||||||||| |||| | || ||  ||||||||    
T  43849851 atatgatatttatttaccattttgatactggaggcatcaccttaaaaatttaagtaagggatacgaaacttagcagcagatatatgggagcagtgtgtaa 43849950  T
Q  378 g-gt-----ggtgctgcataaaaggcccacatcgggtaatgaagaaaataactgagtagacagtggatataaaagca-atgcaaggtctcatttcaactc 470  Q
    | ||     |||||| |   | || ||||||||||||||| ||||||  | |||||||||||| ||||||||||||| ||||   | || ||||||||||    
T  43849951 gagtcccaaggtgctactgcatagtcccacatcgggtaatcaagaaaggatctgagtagacagaggatataaaagcagatgcgtagccttatttcaactc 43850050  T
Q  471 atacctttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  43850051 atacctttctcggccttttggctaagatcaagtgtagtatctg 43850093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 462 - 513
Target Start/End: Original strand, 8973305 - 8973356
Alignment:
Q  462 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8973305 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctg 8973356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 462 - 513
Target Start/End: Original strand, 8979315 - 8979366
Alignment:
Q  462 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8979315 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctg 8979366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 462 - 513
Target Start/End: Original strand, 9023440 - 9023491
Alignment:
Q  462 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9023440 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctg 9023491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 462 - 513
Target Start/End: Original strand, 9026779 - 9026830
Alignment:
Q  462 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9026779 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctg 9026830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 462 - 513
Target Start/End: Original strand, 30732001 - 30732052
Alignment:
Q  462 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30732001 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctg 30732052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 463 - 513
Target Start/End: Original strand, 32918074 - 32918124
Alignment:
Q  463 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32918074 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctg 32918124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 461 - 510
Target Start/End: Original strand, 8984685 - 8984734
Alignment:
Q  461 atttcaactcatacctttctcggccttttggctaagatcaagtgtagtat 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8984685 atttcaactcatacctttctcggccttttggctaagatcaagtgtagtat 8984734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 466 - 513
Target Start/End: Original strand, 9008018 - 9008065
Alignment:
Q  466 aactcatacctttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9008018 aactcatacctttctcggccttttggctaagatcaagtgtagtatctg 9008065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 462 - 513
Target Start/End: Original strand, 9032046 - 9032097
Alignment:
Q  462 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9032046 tttcaactcatacctttctcggccttttggttaagatcaagtgtagtatctg 9032097  T

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Target: chr2; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 468 - 513
Target Start/End: Complemental strand, 2841125 - 2841080
Alignment:
Q  468 ctcatacctttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  2841125 ctcatacctttctcggccttttggctaagatcaagtgtagtatctg 2841080  T

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Target: chr2; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 462 - 513
Target Start/End: Original strand, 9020840 - 9020891
Alignment:
Q  462 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  9020840 tttcaattcatacatttctcggccttttggctaagatcaagtgtagtatctg 9020891  T

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Target: chr2; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 466 - 513
Target Start/End: Original strand, 30733985 - 30734032
Alignment:
Q  466 aactcatacctttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||    
T  30733985 aacttatacctttctcggccttttggctaagatcaagtgtagtatctg 30734032  T

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Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 462 - 513
Target Start/End: Original strand, 9030391 - 9030442
Alignment:
Q  462 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    ||||||||||||  ||||| ||||||||||||||||||||||||||||||||    
T  9030391 tttcaactcatatttttcttggccttttggctaagatcaagtgtagtatctg 9030442  T

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Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 471 - 513
Target Start/End: Complemental strand, 19232504 - 19232462
Alignment:
Q  471 atacctttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  19232504 atacctttctcggccttttggctaagatcaagtgtaatatctg 19232462  T

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Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 462 - 510
Target Start/End: Original strand, 8988448 - 8988496
Alignment:
Q  462 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtat 510  Q
    |||||||| ||||| |||| ||||||||||| |||||||||||||||||    
T  8988448 tttcaacttataccattcttggccttttggcgaagatcaagtgtagtat 8988496  T

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Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 466 - 510
Target Start/End: Original strand, 8992145 - 8992189
Alignment:
Q  466 aactcatacctttctcggccttttggctaagatcaagtgtagtat 510  Q
    ||||||| |||||||| | ||||||||||||||||||||||||||    
T  8992145 aactcatgcctttctcagtcttttggctaagatcaagtgtagtat 8992189  T

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Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 466 - 513
Target Start/End: Original strand, 9016490 - 9016537
Alignment:
Q  466 aactcatacctttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    ||||||||||||  ||| |||||||||||||||||| |||||||||||    
T  9016490 aactcataccttattcgaccttttggctaagatcaaatgtagtatctg 9016537  T

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Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 472 - 507
Target Start/End: Original strand, 39814115 - 39814150
Alignment:
Q  472 tacctttctcggccttttggctaagatcaagtgtag 507  Q
    ||||||||||||||||||||||| ||||||||||||    
T  39814115 tacctttctcggccttttggctatgatcaagtgtag 39814150  T

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Target: chr6 (Bit Score: 77; Significance: 2e-35; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 378 - 513
Target Start/End: Complemental strand, 10796088 - 10795953
Alignment:
Q  378 ggtggtgctgcataaaaggcccacatcgggtaatgaagaaaataactgagtagacagtggatataaaagca-atgcaaggtctcatttcaactcatacct 476  Q
    |||||| ||||||| ||| ||||||||||||||||||||||  |||||||| |||||| |||||||||||| | || || |||  |||||||||||||||    
T  10796088 ggtggtactgcatataagtcccacatcgggtaatgaagaaagaaactgagt-gacagttgatataaaagcagaagccagctcttctttcaactcatacct 10795990  T
Q  477 ttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    |||||||||||||||||||||||||||||||||||||    
T  10795989 ttctcggccttttggctaagatcaagtgtagtatctg 10795953  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 378 - 513
Target Start/End: Complemental strand, 10791850 - 10791715
Alignment:
Q  378 ggtggtgctgcataaaaggcccacatcgggtaatgaagaaaataactgagtagacagtggatataaaagca-atgcaaggtctcatttcaactcatacct 476  Q
    |||||| ||||||| ||| |||| |||||||||||||||||  |||| ||| |||||| |||||||||||| | || |  |||  |||||||||||||||    
T  10791850 ggtggtactgcatataagtcccatatcgggtaatgaagaaagaaactaagt-gacagttgatataaaagcagaagccaactcttctttcaactcatacct 10791752  T
Q  477 ttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    |||||||||||||||||||||||||||||||||||||    
T  10791751 ttctcggccttttggctaagatcaagtgtagtatctg 10791715  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 469 - 513
Target Start/End: Original strand, 30521242 - 30521286
Alignment:
Q  469 tcatacctttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    |||||||||||||| |||||||||| |||||||||||||||||||    
T  30521242 tcatacctttctcgaccttttggctgagatcaagtgtagtatctg 30521286  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 471 - 513
Target Start/End: Original strand, 8875691 - 8875733
Alignment:
Q  471 atacctttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    |||| |||| |||||||||||||||||||||||||| ||||||    
T  8875691 atacatttcccggccttttggctaagatcaagtgtaatatctg 8875733  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 471 - 513
Target Start/End: Complemental strand, 15758608 - 15758566
Alignment:
Q  471 atacctttctcggccttttggctaagatcaagtgtagtatctg 513  Q
    ||||||||||| |||||||||||||||||||||||| ||||||    
T  15758608 atacctttctcagccttttggctaagatcaagtgtaatatctg 15758566  T

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