View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4845_high_1 (Length: 730)

Name: NF4845_high_1
Description: NF4845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4845_high_1
NF4845_high_1
[»] chr1 (1 HSPs)
chr1 (13-713)||(12249963-12250663)


Alignment Details
Target: chr1 (Bit Score: 673; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 673; E-Value: 0
Query Start/End: Original strand, 13 - 713
Target Start/End: Original strand, 12249963 - 12250663
Alignment:
Q  13 tcatcaacaaaagggttattagtgtgaataacgcataatgtagtaacattaggaacatgttgttgaacatcaacaataacatcatcaacaaatacctccc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12249963 tcatcaacaaaagggttattagtgtgaataacgcataatgtagtaacattaggaacatgttgttgaacatcaacaataacatcatcaacaaatacctccc 12250062  T
Q  113 atttatccgtaatcactgtagtcttcaaaccattctttaattcttcataatcatttctaacaacaatagctttttcttcatctttattcttgattctctt 212  Q
    ||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  12250063 attgatccgtaatcactgtagtcttcaaaccattcttcaattgttcataatcatttctaacaacaatagctttctcttcatctttattcttgattctctt 12250162  T
Q  213 gagttcttcaatttcctcttcattaatgcttaaaatatttggacattctgatttattaagaacaccaatttctctacaaaaatcaaagtataaagataat 312  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12250163 gagttcttcaatttcctcttcattaattcttaaaatatttggacattctgatttattaagaacaccaatttctctacaaaaatcaaagtataaagataat 12250262  T
Q  313 ttatcaccttgcaattgagcttttcttataatatcaagaccaatacatgcttcttcttttccaccaatatcacaaacccttaacaatacacggttaatct 412  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12250263 ttatcaccttgcaattgagcttttcttataatatcaagaccaatgcatgcttcttcttttccaccaatatcacaaacccttaacaatacacggttaatct 12250362  T
Q  413 ctttggaaaatttaccataaacttccaaaatctcatccatcacacaatccattgcttcaagaataagaacaattttcatactcatttcactcttaggttt 512  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  12250363 ctttggaaaatttaccataaacttccaaaatctcatccatcacacaatccattgcttctagaataagaacaattttcatactcatttcactcttaggttt 12250462  T
Q  513 tatttgtaacaacatatcaatcaatttttgtaactcctccaaattcttcaactcttcaatcaatggaatttcttcactttcctttccttttttgttttgt 612  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12250463 tatttgtaacaacatatcaatcaatttttgtaactcctccaaattcttcaactcttcaatcaatggaatttcttcactttcctttccttttttgttttgt 12250562  T
Q  613 aatttatttgcctcctccctcaaaattaccgatctttgatccaaataagcaaagtaagatcgaacaaaagcgttaaaaacccaacctttctcgggactta 712  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12250563 aatttatttgcctcctccctcaaaattaccgatctttgatccaaataagcaaagtaagatcgaacaaaagcgttaaaaacccaacctttctcgggactta 12250662  T
Q  713 a 713  Q
    |    
T  12250663 a 12250663  T

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