View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4845_high_3 (Length: 423)
Name: NF4845_high_3
Description: NF4845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4845_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 7 - 389
Target Start/End: Complemental strand, 44297563 - 44297195
Alignment:
| Q |
7 |
gtccttttctccgaaccaagaaaattatctctttactatcgtttcctagggcagaagtaaaataatatttacacacatatatctaaaacaaaaactaact |
106 |
Q |
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| T |
44297563 |
gtccttttctccgaaccaagaaaattatctttttactatcgtttcctagggcagaagtaaaataatatttacacacatatatctaaaacaaaaactaact |
44297464 |
T |
|
| Q |
107 |
tcccttacgtttacaagcaacacattttccgtnnnnnnnttaacattgcatttcaagtcaaaaaataacgtttacaattcacaaacatctccacctaccc |
206 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
44297463 |
tcccttacgtttacaagcaacacattttccgtaaaaaaattaacattgcatt--------------aacgtttacaattcacaaacatctccacctaccc |
44297378 |
T |
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| Q |
207 |
ccacggtgtttttacaatttaaaattctgtggctaaggnnnnnnnnagaaaaatattagtctaggtcacaaagtacttctagtaatttaaatatttacag |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44297377 |
ccacggtgtttttacaatttaaaattctgtggctaaggttttttttagaaaaatattagtctaggtcacaaagtacttctagtaatttaaatatttacag |
44297278 |
T |
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| Q |
307 |
agcatcacgtgatagtgatatatctttaccaagttaccttataaaaagaaaacattgccaaatttacactagctttaacgata |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44297277 |
tgcatcacgtgatagtgatatatctttaccaagttaccttataaaaagaaaacattgccaaatttacactagctttaacgata |
44297195 |
T |
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