View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4845_low_1 (Length: 730)

Name: NF4845_low_1
Description: NF4845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4845_low_1
NF4845_low_1
[»] chr1 (1 HSPs)
chr1 (13-713)||(12249963-12250663)


Alignment Details
Target: chr1 (Bit Score: 673; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 673; E-Value: 0
Query Start/End: Original strand, 13 - 713
Target Start/End: Original strand, 12249963 - 12250663
Alignment:
Q  13 tcatcaacaaaagggttattagtgtgaataacgcataatgtagtaacattaggaacatgttgttgaacatcaacaataacatcatcaacaaatacctccc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12249963 tcatcaacaaaagggttattagtgtgaataacgcataatgtagtaacattaggaacatgttgttgaacatcaacaataacatcatcaacaaatacctccc 12250062  T
Q  113 atttatccgtaatcactgtagtcttcaaaccattctttaattcttcataatcatttctaacaacaatagctttttcttcatctttattcttgattctctt 212  Q
    ||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  12250063 attgatccgtaatcactgtagtcttcaaaccattcttcaattgttcataatcatttctaacaacaatagctttctcttcatctttattcttgattctctt 12250162  T
Q  213 gagttcttcaatttcctcttcattaatgcttaaaatatttggacattctgatttattaagaacaccaatttctctacaaaaatcaaagtataaagataat 312  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12250163 gagttcttcaatttcctcttcattaattcttaaaatatttggacattctgatttattaagaacaccaatttctctacaaaaatcaaagtataaagataat 12250262  T
Q  313 ttatcaccttgcaattgagcttttcttataatatcaagaccaatacatgcttcttcttttccaccaatatcacaaacccttaacaatacacggttaatct 412  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12250263 ttatcaccttgcaattgagcttttcttataatatcaagaccaatgcatgcttcttcttttccaccaatatcacaaacccttaacaatacacggttaatct 12250362  T
Q  413 ctttggaaaatttaccataaacttccaaaatctcatccatcacacaatccattgcttcaagaataagaacaattttcatactcatttcactcttaggttt 512  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  12250363 ctttggaaaatttaccataaacttccaaaatctcatccatcacacaatccattgcttctagaataagaacaattttcatactcatttcactcttaggttt 12250462  T
Q  513 tatttgtaacaacatatcaatcaatttttgtaactcctccaaattcttcaactcttcaatcaatggaatttcttcactttcctttccttttttgttttgt 612  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12250463 tatttgtaacaacatatcaatcaatttttgtaactcctccaaattcttcaactcttcaatcaatggaatttcttcactttcctttccttttttgttttgt 12250562  T
Q  613 aatttatttgcctcctccctcaaaattaccgatctttgatccaaataagcaaagtaagatcgaacaaaagcgttaaaaacccaacctttctcgggactta 712  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12250563 aatttatttgcctcctccctcaaaattaccgatctttgatccaaataagcaaagtaagatcgaacaaaagcgttaaaaacccaacctttctcgggactta 12250662  T
Q  713 a 713  Q
    |    
T  12250663 a 12250663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University