View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4845_low_2 (Length: 670)
Name: NF4845_low_2
Description: NF4845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4845_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 160; Significance: 6e-85; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 368 - 652
Target Start/End: Complemental strand, 16400186 - 16399892
Alignment:
| Q |
368 |
aagaattatgtttgatacaaaat----tacaatcactgcgccaaatatttccttctcctttccttgaaaattttagagttaaaacaatatagttatatcc |
463 |
Q |
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| T |
16400186 |
aagaattatgtttgatagaaaataaattacaatcattgctccaaatatttcct----cttttcttgaaaagtttagagttaaaacatta-agttacatcc |
16400092 |
T |
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| Q |
464 |
atcttt-----------tcgatctgatgtacgattgaccaatcttgcgtttacatttttatagtactattgcttggagcaagagtagcagcctcagcagc |
552 |
Q |
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| T |
16400091 |
atctttagagcgttttttcgatctgatgtatcattgaccaatctcgtgtttacatttttatagtactattgcttggagcaagagtagcagcttcagcagc |
16399992 |
T |
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| Q |
553 |
ggcaatttcccaagaagatgagaaaagagcatggctcatattggcttgggtcagcactatagcagggaacctgtcactattgggatcagctgcaaacttg |
652 |
Q |
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| T |
16399991 |
tgcaatttcccaagaagacgagaaaagggcatggctcatattggcttgggtcagcactatagcagggaacctgtcactattgggatcagctgcaaacttg |
16399892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 473 - 566
Target Start/End: Complemental strand, 16397237 - 16397144
Alignment:
| Q |
473 |
atctgatgtacgattgaccaatcttgcgtttacatttttatagtactattgcttggagcaagagtagcagcctcagcagcggcaatttcccaag |
566 |
Q |
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| T |
16397237 |
atctgatgtatcattgaccaatcttgtgtttacatttttctagtactattgcttggcgcaagagttgcagcctcaacaaccgcaatttcccaag |
16397144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 56 - 150
Target Start/End: Complemental strand, 16400495 - 16400401
Alignment:
| Q |
56 |
ttatgttagagttgtgaaatagagtctggctgtccggttcaaccggaaataggctagtctggcggatggttgaaccaaggtcggttcacggtcct |
150 |
Q |
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| T |
16400495 |
ttatgttagtgtggtgaaacagaacctggctgtctggttcagccagaaataggtcagtctggcggttggttgaaccaaggtcggttcacggtcct |
16400401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 467 - 612
Target Start/End: Original strand, 15942563 - 15942708
Alignment:
| Q |
467 |
ttttcgatctgatgtacgattgaccaatcttgcgtttacatttttatagtactattgcttggagcaagagtagcagcctcagcagcggcaatttcccaag |
566 |
Q |
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| T |
15942563 |
tttttgatctgatgtgtcattgaccaatcttatatttgcattttactagtactattgctttgagcaagtgttgcagtctcagctgctgaaatttcccaat |
15942662 |
T |
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| Q |
567 |
aagatgagaaaagagcatggctcatattggcttgggtcagcactat |
612 |
Q |
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| T |
15942663 |
aagatgagtaaaggatatggcttatattggtttgaatcagcactat |
15942708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 613 - 652
Target Start/End: Complemental strand, 16397145 - 16397106
Alignment:
| Q |
613 |
agcagggaacctgtcactattgggatcagctgcaaacttg |
652 |
Q |
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| T |
16397145 |
agcagggaacctgtcactattgggatcagctgcaaacttg |
16397106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 154; Significance: 2e-81; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 362 - 652
Target Start/End: Original strand, 14307651 - 14307952
Alignment:
| Q |
362 |
aaactcaagaattatgtttgatacaaaattacaatcactgcgccaaatatttccttctcctttccttgaaaattttagagttaaaacaatatagttatat |
461 |
Q |
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| T |
14307651 |
aaactcaagaattatgtttgatagaaaattacaatcattgctccaaatatttcctcttcctatctttgaaaattttacagt-aaaataatttagttatat |
14307749 |
T |
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| Q |
462 |
ccatctt------------ttcgatctgatgtacgattgaccaatcttgcgtttacatttttatagtactattgcttggagcaagagtagcagcctcagc |
549 |
Q |
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| T |
14307750 |
ccatcttcggaggagatattttgatcttatgtatcattgaccaatcttgtgtttacatttttctagtactattgcttggagcaagagttgcagcctcggc |
14307849 |
T |
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| Q |
550 |
agcggcaatttcccaagaagatgagaaaagagcatggctcatattggcttgggtcagcactatagcagggaacctgtcactattgggatcagctgcaaac |
649 |
Q |
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| T |
14307850 |
tgctgcaatttctcaagaagatcagaaaagggcatggctcatattggcttgggtcagcactacagcagggaacctgtcactattggggtcagctgcaaac |
14307949 |
T |
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| Q |
650 |
ttg |
652 |
Q |
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| T |
14307950 |
ttg |
14307952 |
T |
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