View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4845_low_6 (Length: 250)

Name: NF4845_low_6
Description: NF4845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4845_low_6
NF4845_low_6
[»] chr1 (2 HSPs)
chr1 (1-242)||(41580562-41580803)
chr1 (1-242)||(17106779-17107021)
[»] chr4 (3 HSPs)
chr4 (4-220)||(19101367-19101582)
chr4 (42-109)||(28091801-28091869)
chr4 (134-188)||(30915054-30915108)
[»] chr7 (5 HSPs)
chr7 (18-242)||(14615701-14615928)
chr7 (62-215)||(16031163-16031315)
chr7 (99-188)||(5642781-5642870)
chr7 (99-188)||(5648633-5648722)
chr7 (112-170)||(10340078-10340136)
[»] chr5 (1 HSPs)
chr5 (4-242)||(17713953-17714195)
[»] chr3 (1 HSPs)
chr3 (99-184)||(20178494-20178579)
[»] scaffold0039 (1 HSPs)
scaffold0039 (8-103)||(32683-32779)
[»] chr8 (2 HSPs)
chr8 (76-232)||(14755698-14755855)
chr8 (126-188)||(24590818-24590880)
[»] scaffold0010 (1 HSPs)
scaffold0010 (112-163)||(134550-134601)
[»] scaffold2061 (1 HSPs)
scaffold2061 (8-80)||(886-958)


Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 41580562 - 41580803
Alignment:
Q  1 acctactcttaagcaagaaatcactactacaagtaattatacaactttgatatatgtgatgaattaaacatcaagttaatctttactatgaaggtgattg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41580562 acctactcttaagcaagaaatcactactacaagtaattatacaactttgatatatgtgatgaattaaacatcaagttaatctttactatgaaggtgattg 41580661  T
Q  101 aatcaataatctcttgaaaatagattttagaatttattcaatcacaaaacatgtagcaattaacataattcaacataatcatatatcaccaattggtttg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41580662 aatcaataatctcttgaaaatagattttagaatttattcaatcacaaaacatgtagcaattaacataattcaacataatcatatatcaccaattggtttg 41580761  T
Q  201 tagaaatttaaagagtaaggaaagaagaacaccgagaattat 242  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  41580762 tagaaatttaaagagtaaggaaagaagaacaccgagaattat 41580803  T

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Target: chr1; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 17106779 - 17107021
Alignment:
Q  1 acctactcttaagcaagaaatcactactacaagtaattatacaactttgatatatgtgatgaattaaacatcaagttaatctttactatgaaggtgattg 100  Q
    |||||||||||||||||||||| ||| || ||||||||||||| | ||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  17106779 acctactcttaagcaagaaatccctaatataagtaattatacatcattgatatatgtgatgaattaagcatcaagttaatctctactatgaaggtgattg 17106878  T
Q  101 aatcaataatctcttgaaaatagattttagaatttattcaatcacaaaacatgtagcaattaacataattcaacataatcatatatcaccaattggtttg 200  Q
    ||| ||||| ||||||||||| | |||||||||||||| ||||||||| |||||| |||||||| ||||||| ||| ||||||||| || ||||| ||||    
T  17106879 aattaataagctcttgaaaattggttttagaatttatttaatcacaaagcatgtatcaattaacctaattcatcatgatcatatattacaaattgatttg 17106978  T
Q  201 tagaaatttaaagagtaa-ggaaagaagaacaccgagaattat 242  Q
     |||||||||| |||||| ||||| ||||||| ||||| ||||    
T  17106979 cagaaatttaatgagtaagggaaataagaacatcgagatttat 17107021  T

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Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 4 - 220
Target Start/End: Original strand, 19101367 - 19101582
Alignment:
Q  4 tactcttaagcaagaaatcactactacaagtaattatacaactttgatatatgtgatgaattaaacatcaagttaatctttactatg-aaggtgattgaa 102  Q
    |||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||| || ||| ||||||| || || | ||||||||||||    
T  19101367 tactcttaagcaagaaatcactaacaaaagtaattatacaactttgatatatgtgatgaattaagcaccaaattaatctcta-tacgaaaggtgattgaa 19101465  T
Q  103 tcaataatctcttgaaaatagattttagaatttattcaatcacaaaacatgtagcaattaacataattcaacataatcatatatcaccaattggtttgta 202  Q
    ||||||| ||||||||||||| ||||| ||||||||||||||| || | ||||| ||||||| ||| ||| |||||||||||||||  ||||| |||| |    
T  19101466 tcaataagctcttgaaaataggttttataatttattcaatcac-aagcgtgtagaaattaacttaactcatcataatcatatatcataaattgatttgca 19101564  T
Q  203 gaaatttaaagagtaagg 220  Q
    ||||||||||||||||||    
T  19101565 gaaatttaaagagtaagg 19101582  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 28091801 - 28091869
Alignment:
Q  42 caactttgatatatgtgatgaattaaacatcaagttaatctttactatg-aaggtgattgaatcaataa 109  Q
    |||||||||||||||||||||| | | || ||||||||||| || |||| ||||||||||||| |||||    
T  28091801 caactttgatatatgtgatgaaattatcaacaagttaatctctaatatgaaaggtgattgaattaataa 28091869  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 30915108 - 30915054
Alignment:
Q  134 ttattcaatcacaaaacatgtagcaattaacataattcaacataatcatatatca 188  Q
    ||||||||||| ||||||| |||||||||| |||||| | ||||| |||||||||    
T  30915108 ttattcaatcaaaaaacatatagcaattaaaataatttatcataaacatatatca 30915054  T

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Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 14615701 - 14615928
Alignment:
Q  18 aaatcactactacaagtaattatacaactttgatatatgtgatgaattaaacatcaa-gttaatctttactatgaaggtgattgaatcaataatctcttg 116  Q
    |||| |||| || ||||||||| ||| ||||||||||||||||||||||| || ||| |||||||| ||||   | ||||||| |||| | || ||||||    
T  14615701 aaataactaataaaagtaattacaca-ctttgatatatgtgatgaattaagcaacaaagttaatctctactgcaacggtgattaaatcgacaagctcttg 14615799  T
Q  117 aaaataga--ttttagaatttattcaatcacaaaacatgtagcaattaacataattcaacataatcatatatcaccaattggtttgtagaaatttaaaga 214  Q
    |||| | |  ||||||||||||||||  ||||| |||  ||| ||||||| ||||||| ||||| |||||||||  ||||| ||||  ||||||||||||    
T  14615800 aaaaaaaagtttttagaatttattcatccacaacacaaatagaaattaacctaattcatcataaacatatatcaagaattgatttgctgaaatttaaaga 14615899  T
Q  215 -gtaaggaaagaagaacaccgagaattat 242  Q
      || ||||||||||||| ||||| ||||    
T  14615900 tttagggaaagaagaacatcgagatttat 14615928  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 215
Target Start/End: Complemental strand, 16031315 - 16031163
Alignment:
Q  62 aattaaacatcaagttaatctttactatgaaggtgattgaatcaataatctcttgaaaatagattttagaatttattcaatcacaaaacatgtagca-at 160  Q
    |||||| || ||| ||||||| ||| ||||   |||||||||||||||  | |||||||||| ||| |||| || |||||||| ||| ||||||  | ||    
T  16031315 aattaagcaccaaattaatctctacaatgagaatgattgaatcaataagattttgaaaataggtttaagaaattcttcaatca-aaagcatgtaaaacat 16031217  T
Q  161 taacataattcaacataatcatatatcaccaattggtttgtagaaatttaaagag 215  Q
    || | ||||||| |||||||||||||||| ||||| |||| |||| |||||||||    
T  16031216 tagc-taattcatcataatcatatatcacaaattgatttgcagaagtttaaagag 16031163  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 188
Target Start/End: Original strand, 5642781 - 5642870
Alignment:
Q  99 tgaatcaataatctcttgaaaatagattttagaatttattcaatcacaaaacatgtagcaattaacataattcaacataatcatatatca 188  Q
    |||||||| ||  |||||||||||  |||||||||||||||||||||||  ||| ||||||||||   |||||| ||| |||||| ||||    
T  5642781 tgaatcaacaagttcttgaaaataagttttagaatttattcaatcacaagtcatatagcaattaaacaaattcatcattatcatacatca 5642870  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 188
Target Start/End: Original strand, 5648633 - 5648722
Alignment:
Q  99 tgaatcaataatctcttgaaaatagattttagaatttattcaatcacaaaacatgtagcaattaacataattcaacataatcatatatca 188  Q
    |||||||| ||  |||||||||||  |||||||||||||||||||||||  ||| ||||||||||   |||||| ||| |||||| ||||    
T  5648633 tgaatcaacaagttcttgaaaataagttttagaatttattcaatcacaagtcatatagcaattaaacaaattcatcattatcatacatca 5648722  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 170
Target Start/End: Complemental strand, 10340136 - 10340078
Alignment:
Q  112 tcttgaaaatagattttagaatttattcaatcacaaaacatgtagcaattaacataatt 170  Q
    ||||||||||||||||||||||||||||| |||  || ||| || |||||||| |||||    
T  10340136 tcttgaaaatagattttagaatttattcagtcaggaagcatatatcaattaacttaatt 10340078  T

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Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 242
Target Start/End: Complemental strand, 17714195 - 17713953
Alignment:
Q  4 tactcttaagcaagaaatcactactacaagtaattatacaactttgatatatgtgatgaattaaacatcaagttaatctttactatgaaggtgattgaat 103  Q
    |||||||||  ||||||| |||| || ||||||||| ||| ||||||||||||||||||||||| || ||||||||||| ||||   ||||||||| |||    
T  17714195 tactcttaaataagaaataacta-taaaagtaattacaca-ctttgatatatgtgatgaattaagcaacaagttaatctctactgcaaaggtgattaaat 17714098  T
Q  104 caataatctcttg--aaaatagattttagaatttattcaatcacaaaacatgtagcaattaacataat---tcaacataatcatatatcaccaattggtt 198  Q
    | | || ||||||  |||| || ||||||||||||||||  ||||| |||  ||| ||||||| ||||   ||| |||||  ||||||||  ||||| ||    
T  17714097 cgacaagctcttgaaaaaaaagtttttagaatttattcatccacaacacaaatagaaattaacctaattcatcatcataaatatatatcaagaattgatt 17713998  T
Q  199 tgtagaaatttaaaga-gtaaggaaagaagaacaccgagaattat 242  Q
    ||  ||||||||||||  || ||||||||||||| ||||| ||||    
T  17713997 tgctgaaatttaaagatttagggaaagaagaacatcgagatttat 17713953  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 20178579 - 20178494
Alignment:
Q  99 tgaatcaataatctcttgaaaatagattttagaatttattcaatcacaaaacatgtagcaattaacataattcaacataatcatat 184  Q
    ||||||||||| ||||||| ||| | |||||||||||| ||||||||||| ||| || |||||||| ||||||| | |||||||||    
T  20178579 tgaatcaataaactcttgagaatgggttttagaatttagtcaatcacaaagcatatatcaattaacgtaattcatcgtaatcatat 20178494  T

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Target: scaffold0039 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 32779 - 32683
Alignment:
Q  8 cttaagcaagaaatcactactacaagtaattatacaactttgatatatgtgatgaattaaacatcaagttaatctttactatga-aggtgattgaat 103  Q
    ||||| |||||||||||||  | ||| ||  | |||||||||||||||||||||||| || || ||||||||||| || ||||| ||||||||||||    
T  32779 cttaaacaagaaatcactaacataagaaaccacacaactttgatatatgtgatgaatcaatcaacaagttaatctctagtatgataggtgattgaat 32683  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 232
Target Start/End: Original strand, 14755698 - 14755855
Alignment:
Q  76 ttaatctttactatgaaggtgattgaatcaataatctcttgaaaatagattttagaatttattcaatcacaaaacatgtagcaattaacataattcaaca 175  Q
    ||||||| |||| | ||||||||||||||||| | || |||||| |   ||||||||| ||| ||||| ||| |||  |||||||||||  |||||| ||    
T  14755698 ttaatctctactttcaaggtgattgaatcaattagcttttgaaattttgttttagaatctatccaatcgcaatacaaatagcaattaaccaaattcatca 14755797  T
Q  176 taatcatatatcaccaattggtttgtagaaatttaaagagt-aaggaaagaagaacac 232  Q
    | |  ||||||||  ||||| ||||  |||||| ||||||| ||||| ||||||||||    
T  14755798 tgaatatatatcaaaaattgatttggtgaaattaaaagagtaaaggagagaagaacac 14755855  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 188
Target Start/End: Complemental strand, 24590880 - 24590818
Alignment:
Q  126 tttagaatttattcaatcacaaaacatgtagcaattaacataattcaacataatcatatatca 188  Q
    ||||||||||||||||| |||||  || ||||||||||| ||||||| ||| |||||| ||||    
T  24590880 tttagaatttattcaattacaaaggatatagcaattaacctaattcatcattatcatacatca 24590818  T

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Target: scaffold0010 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 163
Target Start/End: Original strand, 134550 - 134601
Alignment:
Q  112 tcttgaaaatagattttagaatttattcaatcacaaaacatgtagcaattaa 163  Q
    |||||||||| | || ||||||||||||||||||||| ||| ||||||||||    
T  134550 tcttgaaaatcggttctagaatttattcaatcacaaagcatatagcaattaa 134601  T

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Target: scaffold2061 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold2061
Description:

Target: scaffold2061; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 886 - 958
Alignment:
Q  8 cttaagcaagaaatcactactacaagtaattatacaactttgatatatgtgatgaattaaacatcaagttaat 80  Q
    ||||| |||||||| ||||  ||||| || || ||||||||||| ||||||||||| ||| || |||||||||    
T  886 cttaaacaagaaattactaacacaagaaactacacaactttgatgtatgtgatgaactaatcaacaagttaat 958  T

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