View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4846-Insertion-11 (Length: 125)
Name: NF4846-Insertion-11
Description: NF4846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4846-Insertion-11 |
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| [»] chr8 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 91; Significance: 2e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 7 - 125
Target Start/End: Original strand, 42006321 - 42006439
Alignment:
| Q |
7 |
agaaactctgccacagcccgctaccatcccttacttagaagcgccgtccgtatttagccgaatccaaaccatgtttggaggcatccacctaatctcctca |
106 |
Q |
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| T |
42006321 |
agaaactccgccacaacccgctaccatcccttgcttagaagcgccgtccgtatttagccaaatccaacccatgtttggaggcatccacgtaatcccctca |
42006420 |
T |
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| Q |
107 |
atcacagtcatgtgactag |
125 |
Q |
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| T |
42006421 |
atcacagtcatgtgactag |
42006439 |
T |
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Target: chr3 (Bit Score: 77; Significance: 4e-36; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 4e-36
Query Start/End: Original strand, 9 - 125
Target Start/End: Complemental strand, 43337243 - 43337127
Alignment:
| Q |
9 |
aaactctgccacagcccgctaccatcccttacttagaagcgccgtccgtatttagccgaatccaaaccatgtttggaggcatccacctaatctcctcaat |
108 |
Q |
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| T |
43337243 |
aaactccgccataacccgctaccatcccttgcttagtagcgccatccgtatttagccgaatccaacccatgttttgaggcaaccacctaatctcctcaat |
43337144 |
T |
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| Q |
109 |
cacagtcatgtgactag |
125 |
Q |
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| T |
43337143 |
cacagtcatgggactag |
43337127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 9e-34
Query Start/End: Original strand, 9 - 125
Target Start/End: Original strand, 33819775 - 33819890
Alignment:
| Q |
9 |
aaactctgccacagcccgctaccatcccttacttagaagcgccgtccgtatttagccgaatccaaaccatgtttggaggcatccacctaatctcctcaat |
108 |
Q |
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| T |
33819775 |
aaactccgccacaacccgctactattccttgcttagaagcgccatccgtatttagccgaatccaacccatgtttggaggcatccacc-aatctccttaat |
33819873 |
T |
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| Q |
109 |
cacagtcatgtgactag |
125 |
Q |
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| T |
33819874 |
cagagtcatgtgactag |
33819890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 2e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 17 - 125
Target Start/End: Complemental strand, 16542055 - 16541947
Alignment:
| Q |
17 |
ccacagcccgctaccatcccttacttagaagcgccgtccgtatttagccgaatccaaaccatgtttggaggcatccacctaatctcctcaatcacagtca |
116 |
Q |
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| T |
16542055 |
ccacaacccgataccatctcttgcttagaagcaccatccgtatttagctgaatccaacccatgtttggaggcagccacctaatctcctcaatcacagtca |
16541956 |
T |
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| Q |
117 |
tgtgactag |
125 |
Q |
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|| |||||| |
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| T |
16541955 |
tgggactag |
16541947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 3e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 9 - 125
Target Start/End: Original strand, 49076785 - 49076901
Alignment:
| Q |
9 |
aaactctgccacagcccgctaccatcccttacttagaagcgccgtccgtatttagccgaatccaaaccatgtttggaggcatccacctaatctcctcaat |
108 |
Q |
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||||||| ||||| ||||||||||| |||| ||||||||| | |||||||||||||||||| || |||||||||||||||||||||| |||||| ||| |
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| T |
49076785 |
aaactctaccacaacccgctaccattccttgcttagaagcatcatccgtatttagccgaatcaaacacatgtttggaggcatccacctactctccttaat |
49076884 |
T |
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| Q |
109 |
cacagtcatgtgactag |
125 |
Q |
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||| || ||||| |||| |
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| T |
49076885 |
cacggttatgtgcctag |
49076901 |
T |
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