View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4846-Insertion-17 (Length: 417)
Name: NF4846-Insertion-17
Description: NF4846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4846-Insertion-17 |
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| [»] chr8 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 165 - 417
Target Start/End: Complemental strand, 44516025 - 44515773
Alignment:
| Q |
165 |
tatcacaatggctccataagcgatgctccgacctgtactcaaacccaatctgacnnnnnnntgaatagctgaactgcaacttaaaactcaagaaccacag |
264 |
Q |
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| T |
44516025 |
tatcacaatggctccataagcgatgctccgacctgtactcaaacccaatctgacaaaaaaatgaatagctgaactgcaaattaaaacttaggaaccacag |
44515926 |
T |
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| Q |
265 |
tttaaatcacaaccaacaacaaaggtacctcatgaaaacaaaatccgaagatcctccaaaataaagtaaacacaaacaagagacggacacctataattct |
364 |
Q |
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| T |
44515925 |
tttaaatcacaaccaacaacaaaggtgcctcatgaaaacaaaatccgaagatcccccaaaataaagtaaacacaaacaagagacagacgcctataattct |
44515826 |
T |
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| Q |
365 |
gctcaaacagaaacagatcagaatcaccaagacaacatcactgaaaattcaag |
417 |
Q |
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| T |
44515825 |
gctcaaacagaaacggatcagaatcactaagacaacatcactgaaaattcaag |
44515773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 5 - 154
Target Start/End: Complemental strand, 44516203 - 44516052
Alignment:
| Q |
5 |
acaggaagtgccaca--agtaaaacaatacaagtagcaacaggaaccaacagcataccaaacacctgataacaaaagcactaaccaaaagataactaaac |
102 |
Q |
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| T |
44516203 |
acaggaagtgccacacaagtaaaacaatacaagtagcaacaggaaccaacagcataccaaacacccgataacaaaagcactgaccaaaagataactaaac |
44516104 |
T |
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| Q |
103 |
aatcaaagccactccctattcaaacagcaaaccaaaaataaaccaccaccac |
154 |
Q |
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| T |
44516103 |
aatcaaagccactccctatgcaaacagcaaaccaaaaataaaccaccaccac |
44516052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 200 - 417
Target Start/End: Original strand, 29120889 - 29121106
Alignment:
| Q |
200 |
tactcaaacccaatctgacnnnnnnntgaatagctgaactgcaacttaaaactcaagaaccacagtttaaatcacaaccaacaacaaaggtacctcatga |
299 |
Q |
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| T |
29120889 |
tactcaaacccaatctgactaaaaaacgaacagctgaactgcaaataaaatctcaaaaaccacagtttaaatcacaaccaacaacaaagatgcctcacaa |
29120988 |
T |
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| Q |
300 |
aaacaaaatccgaagatcctccaaaataaagtaaacacaaacaagagacggacacctataattctgctcaaacagaaacagatcagaatcaccaagacaa |
399 |
Q |
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| T |
29120989 |
aaacaaaattcaaagatcccttaaactaaagcaaacacaaacaaaagaaggacacctgtacttctgctcaaacagacaaggatcagaaacaccaagacaa |
29121088 |
T |
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| Q |
400 |
catcactgaaaattcaag |
417 |
Q |
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| T |
29121089 |
caatgctgaaaattcaag |
29121106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 251 - 401
Target Start/End: Complemental strand, 1917618 - 1917469
Alignment:
| Q |
251 |
ctcaagaaccacagtttaaatcacaaccaacaacaaaggtacctcatgaaaacaaaatccgaagatcctccaaaataaagtaaacacaaacaagagacgg |
350 |
Q |
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| T |
1917618 |
ctcaggaaccacagtttagatcacgaccaacaataaatatgcctcacaaaaacaaaatccaaagatcc-ccaaactaaagcaaacacaaacaagagacgg |
1917520 |
T |
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| Q |
351 |
acacctataattctgctcaaacagaaacagatcagaatcaccaagacaaca |
401 |
Q |
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| T |
1917519 |
acacctgtacttctactcatacagacaaggatcagaaacaccaagacaaca |
1917469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 1917867 - 1917806
Alignment:
| Q |
5 |
acaggaagtgccacaagtaaaacaatacaagtagcaacaggaaccaacagcataccaaacac |
66 |
Q |
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| T |
1917867 |
acaggaagtgacacaagcaaaacaatacaagaaacaccaggaaccaatagcaaaccaaacac |
1917806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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