View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4846-Insertion-18 (Length: 295)
Name: NF4846-Insertion-18
Description: NF4846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4846-Insertion-18 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 8 - 295
Target Start/End: Original strand, 34809659 - 34809946
Alignment:
| Q |
8 |
aatagaagcctcggtaacattcacagtcatggaaccagaaactctccgacgcatgttcgccggagagttaggtccagaccgcgacttcttcgtctacagc |
107 |
Q |
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| T |
34809659 |
aatagaagcctcggtaacattcacagtcatggaaccagaaactctccgacgcatgttcgccggagagttaggtccagaccgcgacttcttcgtctacagc |
34809758 |
T |
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| Q |
108 |
cgtcacttcaaccctaccgtccttaacctctcccgtctaatggccgctctcgaaggtacagaagcagcttactgtacatccagcggcatgtccgccattt |
207 |
Q |
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| T |
34809759 |
cgtcacttcaaccctaccgtccttaacctctcccgtctaatggccgctctcgaaggtacagaagccgcttactgtacatccagcggcatgtccgccattt |
34809858 |
T |
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| Q |
208 |
ccgctgcaatcctccaactcacctccaccggagaacacgtggtagcttcaagaacactctacggtggaacacacgcgctgttaactca |
295 |
Q |
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| T |
34809859 |
ccgctgcaatcctccaactcacctccaccggagaacacgtggtcgcttcaagaacactctacggtggaacacacgcgctgttaactca |
34809946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 208
Target Start/End: Complemental strand, 36595500 - 36595390
Alignment:
| Q |
98 |
cgtctacagccgtcacttcaaccctaccgtccttaacctctcccgtctaatggccgctctcgaaggtacagaagcagcttactgtacatccagcggcatg |
197 |
Q |
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||||||||||||||| |||||||| |||||||| || ||| |||| ||||| || |||||||| || || || || || |||||| |||| |||||| |
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| T |
36595500 |
cgtctacagccgtcatttcaacccaaccgtcctcaatctcagccgtaagatggcggccctcgaaggcactgaggccgcctattgtacagccagtggcatg |
36595401 |
T |
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| Q |
198 |
tccgccatttc |
208 |
Q |
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| T |
36595400 |
tccgccatttc |
36595390 |
T |
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