View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4846-Insertion-4 (Length: 753)
Name: NF4846-Insertion-4
Description: NF4846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4846-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 559; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 8 - 726
Target Start/End: Original strand, 24049042 - 24049764
Alignment:
| Q |
8 |
ccaactaaacaaatcttttcaccccaagacaatccataatcaaccacaaacaaaaaatatgtcactaatatatttaatgtgctagcattttatggagctt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
24049042 |
ccaactaaacaaatcttttcaccccaagacaatccataatcaaccacaaacaaaaaatatgttactaatatatttaatgtgctagcattttatggagctt |
24049141 |
T |
|
| Q |
108 |
tcgtcatgaataagtcatgattatagaatcctttcaaagcaaaacnnnnnnnnnnggtcatggataagaattatttaatgtgctagcattttatgggatt |
207 |
Q |
| |
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| T |
24049142 |
tcgtcatgaataagtcatgattatagaatcctttcaaagcaaaacaaaaaaaaa-ggtcatggataagaattatttaatgtgctagcattttatgggatt |
24049240 |
T |
|
| Q |
208 |
ttcttcatgaatcgaacatggaaggtgacattaaccaacataacaaacattaannnnnnnnnnnnnn---gttgtttgtacaaacaatcattaaacttta |
304 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
24049241 |
ttcttcatgaatcgaacatggaaggtgacattaaccaacataacaaacattaatttttttttttttttttgttgtttgtacaaacaatcattaaacttta |
24049340 |
T |
|
| Q |
305 |
taatacgaaatataaatattgctaattgaagctcttaaattatataatacatatgtctatgcaagtatgattcattgacatggacatcacgtgtaatatg |
404 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24049341 |
taatacgaaatataaatattgctaattgaagctcttaaattatataatacatatgtctatgcaagtatgattcattgacatggacatcacgtgtaatatg |
24049440 |
T |
|
| Q |
405 |
gttggctgatatgctgatgttgatctcaaagcaagaaacatacacattctaagaccattctaaattaaattaatttaatcatattcnnnnnnnnnaggcc |
504 |
Q |
| |
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|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
24049441 |
gtaggctgatatgctgatgttgatctcaaagcaataaacatacacattctaagaccattctaacttaaattaatttaatcatattctttttttttaggcc |
24049540 |
T |
|
| Q |
505 |
attcttgttgtctttacttaaaaactttgatgccttggaccaaatatcaaacaagattagaataagagtagatcataaaagatcatatgcatttctattt |
604 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24049541 |
attcttgttgtctttacttaaaaactttgatgccttggaccaaatatcaaacaagattagaataagagtagatcataaaagatcatatgcatttctattt |
24049640 |
T |
|
| Q |
605 |
ggtagtttgtatagactgactcattcaaccgttctcatttacttctgatatgcaaaccacagataccgcctaaatg-tcattggttaggaagtat-ata- |
701 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||| |
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| T |
24049641 |
ggtagtttgtatagactgactcattcaaccgttctcatttacttctgatatgcaaaccacagataccgcctaaatgttcattggttagg-agtataatat |
24049739 |
T |
|
| Q |
702 |
tttcccaacttaaattaatttaatc |
726 |
Q |
| |
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||||||||||||||||||||||||| |
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|
| T |
24049740 |
tttcccaacttaaattaatttaatc |
24049764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 298 - 726
Target Start/End: Original strand, 24052470 - 24052907
Alignment:
| Q |
298 |
aactttataatacgaaatataaatattgctaattgaagctcttaaattatataatacatatgtctatgcaagtatgattcattgacatggacatcacgtg |
397 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24052470 |
aactttataatacgaaatataaatactgctaattgaagctcttaaattatataatacatatgtctatgcaagtatgattcattgacatggacatcacgtg |
24052569 |
T |
|
| Q |
398 |
taatatggttggctgatatgctgatgttgatctcaaagcaagaaacatacacattctaagaccattctaaattaaattaatttaatcatattcnnnnnnn |
497 |
Q |
| |
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| T |
24052570 |
taatatggttggctgatatgctgatgttgatcacaaagcaagaaacatacacattctaagaccattctaacttaaattaatttaatcatattcttttttt |
24052669 |
T |
|
| Q |
498 |
nnaggccattcttgttgtctttacttaaaaactttgatgccttggaccaaatatcaaacaagattagaataagagtagatcataaaagatcatatgcatt |
597 |
Q |
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| T |
24052670 |
ttaggccattcttgttgtctttacttaaaaactttgatgccttggaccaaatgtcaaacaagattagaataagagtagatcataaaagatcatatgcatt |
24052769 |
T |
|
| Q |
598 |
tctatttggtagtttgtatagactgactcattcaaccgttctcatttacttctgatat-------gcaaaccacagataccgcctaaatg-tcattggtt |
689 |
Q |
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| T |
24052770 |
tctatttggtagtttgtatagactgactcattcaaccgttctcatttacttctgatatgcaaacggcaaaccacagataccgcctaaatgttcattggtt |
24052869 |
T |
|
| Q |
690 |
aggaagtat-ata-tttcccaacttaaattaatttaatc |
726 |
Q |
| |
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| T |
24052870 |
aggaa-tataatattttcccaacttaaattaatttaatc |
24052907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 275 - 306
Target Start/End: Original strand, 24051350 - 24051381
Alignment:
| Q |
275 |
gttgtttgtacaaacaatcattaaactttata |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
24051350 |
gttgtttgtacaaacaatcattaaactttata |
24051381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 1e-34; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 530 - 657
Target Start/End: Complemental strand, 4261422 - 4261295
Alignment:
| Q |
530 |
tttgatgccttggaccaaatatcaaacaagattagaataagagtagatcataaaagatcatatgcatttctatttggtagtttgtatagactgactcatt |
629 |
Q |
| |
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|||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||| ||| |||||||| ||||| ||| ||||||||| |
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| T |
4261422 |
tttgatgccttggaccaaatgacaaagaagaatagaataagagtagatcataaaagatcatatgcttttttatttggtcatttgtgcagattgactcatt |
4261323 |
T |
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| Q |
630 |
caaccgttctcatttacttctgatatgc |
657 |
Q |
| |
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| T |
4261322 |
caactgttctcatttactgctgatatgc |
4261295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 537 - 597
Target Start/End: Original strand, 4037883 - 4037943
Alignment:
| Q |
537 |
ccttggaccaaatatcaaacaagattagaataagagtagatcataaaagatcatatgcatt |
597 |
Q |
| |
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|||| ||| ||||| ||| ||| | ||||||| |||||||||||||||||||||||||||| |
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| T |
4037883 |
cctttgacaaaataacaagcaataatagaatatgagtagatcataaaagatcatatgcatt |
4037943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 284 - 317
Target Start/End: Original strand, 4288116 - 4288149
Alignment:
| Q |
284 |
acaaacaatcattaaactttataatacgaaatat |
317 |
Q |
| |
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|||||||||||||||||||||||||| ||||||| |
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|
| T |
4288116 |
acaaacaatcattaaactttataatatgaaatat |
4288149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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