View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4846-Insertion-6 (Length: 534)

Name: NF4846-Insertion-6
Description: NF4846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4846-Insertion-6
NF4846-Insertion-6
[»] chr1 (3 HSPs)
chr1 (8-287)||(34683544-34683823)
chr1 (290-534)||(34683342-34683586)
chr1 (290-468)||(34699642-34699820)


Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 8 - 287
Target Start/End: Complemental strand, 34683823 - 34683544
Alignment:
Q  8 gtaagtacgttacacatagacatacacataattggcttgtaattatttcttcaatttttcttcttgtatataatataactgatctcttatacatgtatca 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  34683823 gtaagtacgttacacatagacatacacataattggcttgtaattatttcttccatttttcttcttgtatataatataactgatctcttatacatgtatca 34683724  T
Q  108 tgtaatatgtcatggatcgaagtttatatacacaaatagatgtattacttattgcttcctcattattcaaaccatctgcagtgtcttgattactgtctcc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34683723 tgtaatatgtcatggatcgaagtttatatacacaaatagatgtattacttattgcttcctcattattcaaaccatctgcagtgtcttgattactgtctcc 34683624  T
Q  208 tcatcattctgttggtcgggtgtgatcttgttgtctgttgaatgttgtttggtcttgtcacatttggacatttctggttt 287  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34683623 tcatcattctgttggtctggtgagatcttgttgtctgttgaatgttgtttggtcttgtcacatttggacatttctggttt 34683544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 290 - 534
Target Start/End: Complemental strand, 34683586 - 34683342
Alignment:
Q  290 ttgaatgttgtttggacttgtcacatttggacatttctggtttaaacttagctaaatctgataattcttcaacacatttcacaatgtcttccacacgaga 389  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||     
T  34683586 ttgaatgttgtttggtcttgtcacatttggacatttctggtttaaacttagctaaatctgataattcttcaacacatttcacaatgtcttctacacgagc 34683487  T
Q  390 tacaatttcgctaagcaaagaaacaactgtgaccacttgaattaattctattattgggatttcgagttttgcatcaccatcatttgcannnnnnngtgtg 489  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||       |||||    
T  34683486 tacaatttcactaagcaaagaaacaactgtgaccacttgaattaattctattattgggatttcgagttttgcatcaccatcttttgcatttttttgtgtg 34683387  T
Q  490 tttggataagcttttaataaattctgaagctctagggctgcatta 534  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  34683386 tttggataagattttaataaattctgaagctctagggctgcatta 34683342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 290 - 468
Target Start/End: Complemental strand, 34699820 - 34699642
Alignment:
Q  290 ttgaatgttgtttggacttgtcacatttggacatttctggtttaaacttagctaaatctgataattcttcaacacatttcacaatgtcttccacacgaga 389  Q
    ||||| ||||||| || |||||||| || |||||||||||||| || |||||||| | ||||| ||||||||||| ||||||||||||||||||||| |     
T  34699820 ttgaacgttgtttagatttgtcacactttgacatttctggtttgaatttagctaattttgatagttcttcaacacttttcacaatgtcttccacacgtgc 34699721  T
Q  390 tacaatttcgctaagcaaagaaacaactgtgaccacttgaattaattctattattgggatttcgagttttgcatcacca 468  Q
    |||| ||||  ||||||||||||  || |||||||||||||||| ||| |||||||||||||| | |||||||||||||    
T  34699720 tacagtttcaataagcaaagaaattaccgtgaccacttgaattacttccattattgggatttccatttttgcatcacca 34699642  T

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