View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4846-Insertion-8 (Length: 441)
Name: NF4846-Insertion-8
Description: NF4846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4846-Insertion-8 |
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Alignment Details
Target: chr8 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 8 - 430
Target Start/End: Complemental strand, 33355753 - 33355329
Alignment:
| Q |
8 |
tgaaatgggttgagacatacttcaaagactgtctttgcaatttgagagatgacatatcattcagtttgggactcatgagtttagtatcatggggagttgc |
107 |
Q |
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| T |
33355753 |
tgaaatgggttgagacatacttcaaagactgtctttgcaatttgagagatgacatatcattcagtttgggactcatgagtttagtatcatggggagttgc |
33355654 |
T |
|
| Q |
108 |
tgaaattcctcagataatcaccatttttcgcaacaagtcaagccatggaatttcccttgcctttctccttacttgggtagcagggttagtcaaatattca |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33355653 |
tgaaattcctcagataatcaccatttttcgcaacaagtcaagccatggaatttcccttgcctttctccttacttgggtagcagggttagtcaaatattca |
33355554 |
T |
|
| Q |
208 |
ttatatacacactctcttttttgtttccatcagttatgcatttaatgaaacagttcatcaacnnnnnnncacattctaatacttactagaaaaatccatt |
307 |
Q |
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| T |
33355553 |
ttatatacacactctcttttttgtttccatcagttatgcatttaatgaaacagttcatcaactttttttcacattataatacttactagcaaaatccatt |
33355454 |
T |
|
| Q |
308 |
ggatcatgttagttagcttaaatgttatgtagcattga--tattacatattaaagatgtgtctgatgtcaaacatgtgtaggcgctcaacaccaacatga |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||| |
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| T |
33355453 |
ggatcatgttagttagcttaaatgttatgtagcattgatctattacatattaaagatgtgtctgatgtcaaacatgtgtaggcgttcaacatccacatga |
33355354 |
T |
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| Q |
406 |
tacaaacacatgtagttacttttaa |
430 |
Q |
| |
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| T |
33355353 |
tacaaacacatgtagttacatttaa |
33355329 |
T |
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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 197
Target Start/End: Original strand, 7217385 - 7217557
Alignment:
| Q |
25 |
tacttcaaagactgtctttgcaatttgagagatgacatatcattcagtttgggactcatgagtttagtatcatggggagttgctgaaattcctcagataa |
124 |
Q |
| |
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||||||| |||||||| |||||| | | ||| |||| ||||||| ||| ||| |||| |||||| | | ||||| ||||||||||||||||| || | |
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| T |
7217385 |
tacttcagtgactgtctctgcaatgttaatgataacatttcattcacttttggattcatcagtttaatttgttggggtgttgctgaaattcctcaaatta |
7217484 |
T |
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| Q |
125 |
tcaccatttttcgcaacaagtcaagccatggaatttcccttgcctttctccttacttgggtagcagggttagt |
197 |
Q |
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|||| | |||||| ||||| |||||||| |||| ||| |||||| ||||||||||| || |||||||| |
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| T |
7217485 |
tcactaattttcgtgctaagtctagccatggtgtttctattgtctttcttcttacttgggttgctgggttagt |
7217557 |
T |
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