View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4846-Insertion-9 (Length: 221)
Name: NF4846-Insertion-9
Description: NF4846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4846-Insertion-9 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 9 - 221
Target Start/End: Complemental strand, 1242867 - 1242655
Alignment:
| Q |
9 |
acaaaatacttcaaatctttataatttgaattgtaacttgtaaggggtactttagtcaagctaatcctcatttataattgtcacacaccatgctaagttt |
108 |
Q |
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| T |
1242867 |
acaaaatacttcaaatctttataatttgaattgtaacttgtaaggggtactttagtcaagctaatcctcatttataattgtcacacaccatgctaagttt |
1242768 |
T |
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| Q |
109 |
gccatcaagaaagatcatctatgccttttacattacaaggacacatgatattatgtattcccctatttcctttcactgatctcttgagagtcattctcaa |
208 |
Q |
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| T |
1242767 |
gccatcaagaaagatcatctatgctttttaaattacaaggacacatgatattatgtattcccctatttcctttcactgatctcttgagagtcattctcaa |
1242668 |
T |
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| Q |
209 |
tttccttgtatga |
221 |
Q |
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| T |
1242667 |
tttccttgtatga |
1242655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 1249932 - 1249868
Alignment:
| Q |
66 |
aagctaatcctcatttataattgtcacacaccatgctaagtttgccatcaagaaagatcatctatgc |
132 |
Q |
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|||||||||||| ||| |||||||||||| |||||||||| |||||||||| || ||||||||||| |
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| T |
1249932 |
aagctaatcctcgtttgtaattgtcacac--catgctaagtctgccatcaaggaaaatcatctatgc |
1249868 |
T |
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