View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4846_high_1 (Length: 569)
Name: NF4846_high_1
Description: NF4846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4846_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 435; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 12 - 553
Target Start/End: Complemental strand, 2841005 - 2840470
Alignment:
| Q |
12 |
atcatcatgcttccttgtgtctcctttgaatacctgtcatattcaagagctctttaactagaaaatatattgagaatgaatgacataaaaatgagccaca |
111 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2841005 |
atcatcatgcttccttgtgtctcctttgcatccctgtcatattcaagagctctttaactagaaagtatattgagaatgaatgacataaaaatgagccaca |
2840906 |
T |
|
| Q |
112 |
aagatttttcttccttggtggtaccacaaaagcaattaagggcctttttgttttaaaaaatatcaatatatattttctgttcttacttggaatcacaaaa |
211 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
2840905 |
aagatttttcttccttggtgttaccacaaaagcaattaagggcctttttgttttaa----tatcaatatat--tctctgttcttacttggaatcacaaaa |
2840812 |
T |
|
| Q |
212 |
atgttatcttatttttgtatttataggtgggagnnnnnnnnnntgaaacaaacagaannnnnnnccttaaaccgaacaactccgagattttcactttgtc |
311 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2840811 |
atgttatcttatttttgtatttatagatgggagaaaaaaaaaatgaaacaaacagaatttttttccttaaaccgaacaactccgagattttcactttgtc |
2840712 |
T |
|
| Q |
312 |
tgctaactaaagagtagatgtcatgatatacctgcagtttctcttcatcttgttcatcaaacagtgccttggctttctcgagatccctaagtatcaaatg |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2840711 |
tgctaactaaagagtagatgtcatgatatacctgcagtttctcttcatcttgttcatcaaacagtgccttggctttctcgagatccctaagtatcaaatg |
2840612 |
T |
|
| Q |
412 |
ctacttaatattgcactgaagcagtgatgctacaactagctgccctgaatattattaagtcaagtcaattaatttacaaactccccaaatcaaaactatt |
511 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2840611 |
cgacttaatattgcactgaagcagtgatgctacaactagctgccctgaatattattaagtcaagtcaattaatttacaaactccccaaatcaaaactatt |
2840512 |
T |
|
| Q |
512 |
ggcatggattatgtatgcacttctacattttacagttgtttt |
553 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2840511 |
ggcatggattatgtatgcacttctacattttacagttgtttt |
2840470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 12 - 553
Target Start/End: Complemental strand, 2845692 - 2845157
Alignment:
| Q |
12 |
atcatcatgcttccttgtgtctcctttgaatacctgtcatattcaagagctctttaactagaaaatatattgagaatgaatgacataaaaatgagccaca |
111 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2845692 |
atcatcatgcttccttgtgtctcctttgcatccctgtcatattcaagagctctttaactagaaagtatattgagaatgaatgacataaaaatgagccaca |
2845593 |
T |
|
| Q |
112 |
aagatttttcttccttggtggtaccacaaaagcaattaagggcctttttgttttaaaaaatatcaatatatattttctgttcttacttggaatcacaaaa |
211 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
2845592 |
aagatttttcttccttggtgttaccacaaaagcaattaagggcctttttgttttaa----tatcaatatat--tctctgttcttacttggaatcacaaaa |
2845499 |
T |
|
| Q |
212 |
atgttatcttatttttgtatttataggtgggagnnnnnnnnnntgaaacaaacagaannnnnnnccttaaaccgaacaactccgagattttcactttgtc |
311 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2845498 |
atgttatcttatttttgtatttatagatgggagaaaaaaaaaatgaaacaaacagaatttttttccttaaaccgaacaactccgagattttcactttgtc |
2845399 |
T |
|
| Q |
312 |
tgctaactaaagagtagatgtcatgatatacctgcagtttctcttcatcttgttcatcaaacagtgccttggctttctcgagatccctaagtatcaaatg |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2845398 |
tgctaactaaagagtagatgtcatgatatacctgcagtttctcttcatcttgttcatcaaacagtgccttggctttctcgagatccctaagtatcaaatg |
2845299 |
T |
|
| Q |
412 |
ctacttaatattgcactgaagcagtgatgctacaactagctgccctgaatattattaagtcaagtcaattaatttacaaactccccaaatcaaaactatt |
511 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2845298 |
cgacttaatattgcactgaagcagtgatgctacaactagctgccctgaatattattaagtcaagtcaattaatttacaaactccccaaatcaaaactatt |
2845199 |
T |
|
| Q |
512 |
ggcatggattatgtatgcacttctacattttacagttgtttt |
553 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2845198 |
ggcatggattatgtatgcacttctacattttacagttgtttt |
2845157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 279 - 553
Target Start/End: Original strand, 2832642 - 2832915
Alignment:
| Q |
279 |
taaaccgaacaactccgagatttt-cactttgtctgctaactaaagagtagatgtcatgatatacctgcagtttctcttcatcttgttcatcaaacagtg |
377 |
Q |
| |
|
|||||||| ||| ||| ||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
2832642 |
taaaccgatcaagtcctagatttttcactttgtctgctaactaaagtgtagatgtcgtgatatacctgcagtttttcttcatcttgttcaccaaacagtg |
2832741 |
T |
|
| Q |
378 |
ccttggctttctcgagatccctaagtatcaaatgctacttaatattgcactgaagcagtgatgctacaactagctgccctgaatattattaagtcaagtc |
477 |
Q |
| |
|
||||||||||||| ||||||||||||||||| || |||||||||| | |||||||||||||||||||||||||||||||||| ||| |||| ||||| |
|
|
| T |
2832742 |
ccttggctttctcaagatccctaagtatcaagcgcgacttaatattccgctgaagcagtgatgctacaactagctgccctgaa---tatcaagttaagtc |
2832838 |
T |
|
| Q |
478 |
aattaatttacaaactccccaaatcaaaactattggcatggattatgtatgcacttctaca-ttttacagttgtttt |
553 |
Q |
| |
|
|| | ||||||||||||||| ||||||||||||||| |||||||||||||| ||||| | | ||||||||||||||| |
|
|
| T |
2832839 |
aactgatttacaaactccccgaatcaaaactattgggatggattatgtatggacttccaaatttttacagttgtttt |
2832915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 12 - 163
Target Start/End: Original strand, 2832402 - 2832553
Alignment:
| Q |
12 |
atcatcatgcttccttgtgtctcctttgaatacctgtcatattcaagagctctttaactagaaaatatattgagaatgaatgacataaaaatgagccaca |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2832402 |
atcatcatgcttccttgtgtctcctttgaatacctgtcatattcaagagctctttaactagaaaatatattgagaatgaatgacataaaaatgagccacg |
2832501 |
T |
|
| Q |
112 |
aagatttttcttccttggtggtaccacaaaagcaattaagggcctttttgtt |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
2832502 |
aagatttttcttccttggtggtaccacaaaggcaattaagggcatttttgtt |
2832553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 435 - 542
Target Start/End: Original strand, 2790541 - 2790645
Alignment:
| Q |
435 |
gtgatgctacaactagctgccctgaatattattaagtcaagtcaattaatttacaaactccccaaatcaaaactattggcatggattatgtatgcacttc |
534 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||| | ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2790541 |
gtgatgctacaactagctgccctgaatatca---agtcaagtcaattgatttacaaactccacgaatcaaaactattgggatggattatgtatgcacttc |
2790637 |
T |
|
| Q |
535 |
tacatttt |
542 |
Q |
| |
|
||||||| |
|
|
| T |
2790638 |
cacatttt |
2790645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 189 - 240
Target Start/End: Original strand, 2832556 - 2832607
Alignment:
| Q |
189 |
tgttcttacttggaatcacaaaaatgttatcttatttttgtatttataggtg |
240 |
Q |
| |
|
||||| ||||||||||||||||| ||| |||| ||||||||||||||||||| |
|
|
| T |
2832556 |
tgttcatacttggaatcacaaaactgtcatctgatttttgtatttataggtg |
2832607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 111; Significance: 9e-56; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 377 - 553
Target Start/End: Complemental strand, 24182457 - 24182285
Alignment:
| Q |
377 |
gccttggctttctcgagatccctaagtatcaaatgctacttaatattgcactgaagcagtgatgctacaactagctgccctgaatattattaagtcaagt |
476 |
Q |
| |
|
|||||| |||||| |||||||||||||||||| | |||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
24182457 |
gccttgactttcttgagatccctaagtatcaagcacaacttaatattccgctgaagcagtgatgctacaactagctgccctgaat---attaagtcaagt |
24182361 |
T |
|
| Q |
477 |
caattaatttacaaactccccaaatcaaaactattggcatggattatgtatgcacttctacattttacagttgtttt |
553 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
24182360 |
caattaatttacaaactccccgaatcaaaactattggcatggatta-atatgcacttctacattttacggttgtttt |
24182285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 9e-56; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 377 - 553
Target Start/End: Complemental strand, 405962 - 405790
Alignment:
| Q |
377 |
gccttggctttctcgagatccctaagtatcaaatgctacttaatattgcactgaagcagtgatgctacaactagctgccctgaatattattaagtcaagt |
476 |
Q |
| |
|
|||||| |||||| |||||||||||||||||| | |||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
405962 |
gccttgactttcttgagatccctaagtatcaagcacaacttaatattccgctgaagcagtgatgctacaactagctgccctgaat---attaagtcaagt |
405866 |
T |
|
| Q |
477 |
caattaatttacaaactccccaaatcaaaactattggcatggattatgtatgcacttctacattttacagttgtttt |
553 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
405865 |
caattaatttacaaactccccgaatcaaaactattggcatggatta-atatgcacttctacattttacggttgtttt |
405790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 377 - 553
Target Start/End: Original strand, 420116 - 420288
Alignment:
| Q |
377 |
gccttggctttctcgagatccctaagtatcaaatgctacttaatattgcactgaagcagtgatgctacaactagctgccctgaatattattaagtcaagt |
476 |
Q |
| |
|
|||||| |||||| |||||||||||||||||| | |||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
420116 |
gccttgactttcttgagatccctaagtatcaagcacaacttaatattccgctgaagcagtgatgctacaactagctgccctgaa---tattaagtcaagt |
420212 |
T |
|
| Q |
477 |
caattaatttacaaactccccaaatcaaaactattggcatggattatgtatgcacttctacattttacagttgtttt |
553 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
420213 |
caattaatttacaaactccccgaatcaaaactattggcatggatta-atatgcacttctacattttacggttgtttt |
420288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 6e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 377 - 553
Target Start/End: Original strand, 24359843 - 24360015
Alignment:
| Q |
377 |
gccttggctttctcgagatccctaagtatcaaatgctacttaatattgcactgaagcagtgatgctacaactagctgccctgaatattattaagtcaagt |
476 |
Q |
| |
|
|||||| |||||| |||||||||||||||||| | |||||||||| | |||||||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
24359843 |
gccttgtctttcttgagatccctaagtatcaagcacgacttaatattccgctgaagcagtgatgctacaattagctgccctgaa---tattaagtcaagt |
24359939 |
T |
|
| Q |
477 |
caattaatttacaaactccccaaatcaaaactattggcatggattatgtatgcacttctacattttacagttgtttt |
553 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
24359940 |
caattaatttacaaactccccgaatcaaaattattggcatggatta-atatgcacttctacattttacggttgtttt |
24360015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University