View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4846_low_18 (Length: 214)
Name: NF4846_low_18
Description: NF4846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4846_low_18 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 9 - 214
Target Start/End: Complemental strand, 50473851 - 50473646
Alignment:
| Q |
9 |
gcagaacctgtggctgcggcagtacaatcaccagcattatcaccatctcctgacaaccggttggatgcttttgcactattacgttcctcgagagccttct |
108 |
Q |
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| T |
50473851 |
gcagaacctgtagctgcggcagtacaatcaccagcattatcaccatctcctgacaaccggttggatgctattgcactattacgttcctcgagagccttct |
50473752 |
T |
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| Q |
109 |
gcctcgaccttgacctttgcaactttgctagtgacactgctgggtcattgaaactctcggagactcttggttctatctgattctgaggtgaaatagcacc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50473751 |
gcctcgaccttgacctttgcaactttgctagtgacactgctgggtcatggaaactctcggagactcttggttctatctgattctgaggtgaaatagcacc |
50473652 |
T |
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| Q |
209 |
tgaatc |
214 |
Q |
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|||||| |
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| T |
50473651 |
tgaatc |
50473646 |
T |
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