View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4846_low_19 (Length: 202)
Name: NF4846_low_19
Description: NF4846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4846_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 8e-94; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 14 - 187
Target Start/End: Original strand, 39915651 - 39915824
Alignment:
| Q |
14 |
ctcaatgaaataaacttctcacgtgcctgcaacatgaatttcaaaatcaatcaacgacaatcacgactttaaacttgtgattgcaacttcaagagcataa |
113 |
Q |
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| T |
39915651 |
ctcaatgaaataaacttctcacgtgcctgcaacatgaatttcaaaatcaatcaacgacaatcacgactttaaacttgtgattgcaacttcaagagcataa |
39915750 |
T |
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| Q |
114 |
aacattacttgcttcctgtataatgctccttgcttctagctcaggttgactctaaggagcttaagaagacactg |
187 |
Q |
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| T |
39915751 |
aacattacttgcttcctgtataatgctccttgcttctagctcaggttgactctaaggagcttaagaagacactg |
39915824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 85 - 186
Target Start/End: Complemental strand, 39925755 - 39925652
Alignment:
| Q |
85 |
aacttgtgattgcaacttcaagagcataaaacattacttgcttcctgtataatgctccttgcttctagctcaggt--tgactctaaggagcttaagaaga |
182 |
Q |
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| T |
39925755 |
aacttatgattgcaattttaagagcataaaacattacatgcttcctgtattatgctccttgcttcaagctcaagttatacctctaagtagcttaagaaga |
39925656 |
T |
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| Q |
183 |
cact |
186 |
Q |
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|||| |
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| T |
39925655 |
cact |
39925652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 14 - 118
Target Start/End: Complemental strand, 39925891 - 39925777
Alignment:
| Q |
14 |
ctcaatgaaataaacttctcacgtgcctgcaacatgaatttcaaaatcaatcaacg----------acaatcacgactttaaacttgtgattgcaacttc |
103 |
Q |
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| T |
39925891 |
ctcaatgacataaacttcttaggtgtctgcaacatggatttcaaaatcaatcaacgaacaaatacaacaatcatgacttcaaacttgtgattgcaatttc |
39925792 |
T |
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| Q |
104 |
aagagcataaaacat |
118 |
Q |
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| T |
39925791 |
atgagcataaaacat |
39925777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 14 - 186
Target Start/End: Complemental strand, 37550803 - 37550617
Alignment:
| Q |
14 |
ctcaatgaaataaacttctcacgtgcctgcaacatgaatttcaaaatcaatcaacga----------caatcacgactttaaacttgtgattgcaacttc |
103 |
Q |
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| T |
37550803 |
ctcaatgacataaacttctcacgtgcctgcagcatgaatttcgaaatcaatcaacaaataaatacaacaatcacgacttcaaacttgtgattgcaatttc |
37550704 |
T |
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| Q |
104 |
aagagcataaaacattacttgcttcctgtataatgctccttgct----tctagctcaggttgactctaaggagcttaagaagacact |
186 |
Q |
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| T |
37550703 |
aagagcataaaacattacctgcttcctaaatattgctccttgcttcaatcaagctcaggttgcctctaagtagcttaagaagacact |
37550617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 14 - 186
Target Start/End: Complemental strand, 37653632 - 37653446
Alignment:
| Q |
14 |
ctcaatgaaataaacttctcacgtgcctgcaacatgaatttcaaaatcaatcaacga----------caatcacgactttaaacttgtgattgcaacttc |
103 |
Q |
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|||||||| |||||||||||||||||||||| |||||||||| |||||||||||| | |||||||||||| |||||||||||||||| ||| |
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| T |
37653632 |
ctcaatgacataaacttctcacgtgcctgcagcatgaatttcgaaatcaatcaacaaataaatacaacaatcacgacttcaaacttgtgattgcaatttc |
37653533 |
T |
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| Q |
104 |
aagagcataaaacattacttgcttcctgtataatgctccttgct----tctagctcaggttgactctaaggagcttaagaagacact |
186 |
Q |
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| T |
37653532 |
aagagcataaaacattacctgcttcctaaatattgctccttgcttcaatcaagctcaggttgcctctaagtagcttaagaagacact |
37653446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 70 - 149
Target Start/End: Complemental strand, 37722317 - 37722238
Alignment:
| Q |
70 |
acaatcacgactttaaacttgtgattgcaacttcaagagcataaaacattacttgcttcctgtataatgctccttgcttc |
149 |
Q |
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| T |
37722317 |
acaatcacgacttcaaacttgtgattgcaatttcaagagcataaaacattacctgcttcctaaatattgctccttgcttc |
37722238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 2e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 85 - 186
Target Start/End: Complemental strand, 3172297 - 3172196
Alignment:
| Q |
85 |
aacttgtgattgcaacttcaagagcataaaacattacttgcttcctgtataatgctccttgcttctagctcaggttgactctaaggagcttaagaagaca |
184 |
Q |
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| T |
3172297 |
aacttgtcattgcaattccaaaagcataaaacattacctgcatcctgtataatgctccttgcttcaagctcaggttgcctctaagtagcttaagaagaca |
3172198 |
T |
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| Q |
185 |
ct |
186 |
Q |
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|| |
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| T |
3172197 |
ct |
3172196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 3172364 - 3172319
Alignment:
| Q |
73 |
atcacgactttaaacttgtgattgcaacttcaagagcataaaacat |
118 |
Q |
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| T |
3172364 |
atcacgacttcaaacttgtgattgcaatttcaagagcataaaacat |
3172319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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