View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4846_low_3 (Length: 449)

Name: NF4846_low_3
Description: NF4846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4846_low_3
NF4846_low_3
[»] chr7 (1 HSPs)
chr7 (11-435)||(48870113-48870550)
[»] chr1 (3 HSPs)
chr1 (10-435)||(2904632-2905074)
chr1 (10-435)||(2888529-2888977)
chr1 (10-435)||(2893124-2893565)
[»] chr3 (4 HSPs)
chr3 (138-278)||(49060906-49061046)
chr3 (332-431)||(49061165-49061264)
chr3 (340-404)||(38953327-38953391)
chr3 (331-431)||(47281038-47281138)
[»] chr2 (1 HSPs)
chr2 (331-431)||(22085238-22085338)
[»] chr4 (4 HSPs)
chr4 (352-431)||(54905480-54905559)
chr4 (340-404)||(54895042-54895106)
chr4 (346-404)||(54889425-54889483)
chr4 (382-419)||(50106737-50106774)
[»] chr8 (1 HSPs)
chr8 (340-404)||(34316049-34316113)


Alignment Details
Target: chr7 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 11 - 435
Target Start/End: Original strand, 48870113 - 48870550
Alignment:
Q  11 atcatcattcatatccttcctttttctagttggcttttcatcttgatcagaatttcttgtcacagctgaatctattccatttccactatcaaaattaggc 110  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  48870113 atcatcattcatatccttcctttttctagttggcttttcattttgatcagaatttcttgtcacagctgaatctattacatttccactatcaaaattaggc 48870212  T
Q  111 acatcatgattgcttcttttgctagttttcttcttcctaattacatgttgccaaatcatctgtacctctttcaatgtaacaggtttcagaagataatcac 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48870213 acatcatgattgcttcttttgctagttttcttcttcctaattacatgttgccaaatcatctgtacctctttcaatgtaacaggtttcagaagataatcac 48870312  T
Q  211 aagcaccatgatcaattcctttcatcaccatccttggatcatcatttgcagaaaacactga-------------aatcaaaacactataattttttataa 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||    
T  48870313 aagcaccatgatcaattcctttcatcaccatccttggatcatcatttgcagaaaacactgaaatcaaaaactgtaatcaaaacactataattttttataa 48870412  T
Q  298 atgtatcagtaacataagattggagaattgcataacttacctatgacaggtaggtccatctcaagtccaacaagctcaagaagcttaaatccatccatgt 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48870413 atgtatcagtaacataagattggagaattgcataacttacctatgacaggtaggtccatctcaagtccaacaagctcaagaagcttaaatccatccatgt 48870512  T
Q  398 ctggcatatgaacattactgattactaggtcaaaattg 435  Q
    ||||||||||||||||||||||||||||||||||||||    
T  48870513 ctggcatatgaacattactgattactaggtcaaaattg 48870550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 10 - 435
Target Start/End: Complemental strand, 2905074 - 2904632
Alignment:
Q  10 catcatcattcatatccttcctttttctagttggcttttcatcttgatcagaatttcttgtcacagctgaatctattccatttccactatcaaaattagg 109  Q
    |||| |||||| | |||||||||||||||| ||||||||||| ||||||  |||||| ||||  ||||||||| ||||||||||||| |||| |||||||    
T  2905074 catcttcattcttctccttcctttttctagatggcttttcattttgatcgaaatttcctgtccgagctgaatcgattccatttccacaatcagaattagg 2904975  T
Q  110 cacatcatgattgcttcttttgctagttttcttcttcctaattacatgttgccaaatcatctgtacctctttcaatgtaacaggtttcagaagataatca 209  Q
    | ||||| |||||||||||||| |||||||||||||||| | |||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||    
T  2904974 cgcatcacgattgcttcttttgttagttttcttcttcctgactacatgttgccaaatcatttgtacctccttcaatgtaacaggtttcagcagataatca 2904875  T
Q  210 caagcaccatgatcaattcctttcatcaccatccttggatcatcatttgcagaaaacactgaaat---------------caaaacact--ataattttt 292  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||               |||||| ||  ||||||||     
T  2904874 caagcaccatgatcaattcctttcatcaccatctttggatcatcatttgcagaaaacactgaaatcaaacattttttaatcaaaaccctaaataattttc 2904775  T
Q  293 tataaatgtatcagtaacataagattggagaattgcataacttacctatgacaggtaggtccatctcaagtccaacaagctcaagaagcttaaatccatc 392  Q
    |||  ||| |||| ||||||||||||| |||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2904774 tatgcatggatcaataacataagattgaagaatttcataacttactgatgacaggtaggtccatctcaagtccaacaagctcaagaagcttaaatccatc 2904675  T
Q  393 catgtctggcatatgaacattactgattactaggtcaaaattg 435  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  2904674 catgtctggcatatgaacattgctgattactaggtcaaaattg 2904632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 10 - 435
Target Start/End: Complemental strand, 2888977 - 2888529
Alignment:
Q  10 catcatcattcatatccttcctttttctagttggcttttcatcttgatcagaatttcttgtcacagctgaatctattccatttccactatcaaaattagg 109  Q
    |||| |||||| |||||||||||||||||| ||||||||||  ||||||||||||||  ||| |||| |||||| | ||||||||||||||| |||||||    
T  2888977 catcttcattcttatccttcctttttctagatggcttttcaatttgatcagaatttccagtcccagccgaatctttcccatttccactatcagaattagg 2888878  T
Q  110 cacatcatgattgcttcttttgctagttttcttcttcctaattacatgttgccaaatcatctgtacctctttcaatgtaacaggtttcagaagataatca 209  Q
      | || |||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||| | ||||||||||||  |||||||||    
T  2888877 tgcgtcgtgattgcttcttttgctagttttcttcttcctgattacatgctgccaaatgatctgtacctctttcagtctaacaggtttcaccagataatca 2888778  T
Q  210 caagcaccatgatcaattcctttcatcaccatccttggatcatcatttgcagaaaacactgaaat---------------caaaacact--ataattttt 292  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||               |||||| ||  |||||||||    
T  2888777 caagcaccatgttcaattcctttcatcaccatctttggatcatcatttgcagaaaacactgaaatcaaacattttttgatcaaaaccctaaataattttt 2888678  T
Q  293 tataaatgtatcagtaac------ataagattggagaattgcataacttacctatgacaggtaggtccatctcaagtccaacaagctcaagaagcttaaa 386  Q
    |||  ||| |||| ||||      ||||||||| ||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||    
T  2888677 tatgcatggatcaataacaatagaataagattgaagaattgcataacttacttatgacaggtaaatccatctcaagtccaacaagctcaagaagcttaaa 2888578  T
Q  387 tccatccatgtctggcatatgaacattactgattactaggtcaaaattg 435  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2888577 tccatccatgtctggcatatgaacattgctgattactaggtcaaaattg 2888529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 10 - 435
Target Start/End: Complemental strand, 2893565 - 2893124
Alignment:
Q  10 catcatcattcatatccttcctttttctagttggcttttcatcttgatcagaatttcttgtcacagctgaatctattccatttccactatcaaaattagg 109  Q
    |||| |||||| |||||||||||||||||| || | |||||| || ||||||||||| |||| | || |||||| | ||||||||||||||| |||| ||    
T  2893565 catcttcattcttatccttcctttttctagatgccctttcatttttatcagaatttcctgtccccgccgaatctttcccatttccactatcagaattggg 2893466  T
Q  110 cacatcatgattgcttcttttgctagttttcttcttcctaattacatgttgccaaatcatctgtacctctttcaatgtaacaggtttcagaagataatca 209  Q
    | | ||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||| | ||||||||||||| |||||||||    
T  2893465 cgcgtcatgattgcttcttttgctagttttcttcttcctgattacatgctgccaaatgatctgtacctctttcagtctaacaggtttcagcagataatca 2893366  T
Q  210 caagcaccatgatcaattcctttcatcaccatccttggatcatcatttgcagaaaacactgaaat---------------caaaacactataatttttta 294  Q
    |||||||| || ||||||||||||||||||||| | ||||||||||| |||||||||||||||||               ||||| |||||||||  |||    
T  2893365 caagcaccgtgttcaattcctttcatcaccatcttcggatcatcattcgcagaaaacactgaaatcaaacactttataatcaaaatactataattcctta 2893266  T
Q  295 taaatgtatcagtaacataagattgga-gaattgcataacttacctatgacaggtaggtccatctcaagtccaacaagctcaagaagcttaaatccatcc 393  Q
    || |||||||  | | ||||| | | | ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  2893265 tacatgtatcgatgatataaggtcgaaggaattgcataacttactgatgacaggtaggtccatctcaagtccaacaagctcaagaagcttaaatccgtcc 2893166  T
Q  394 atgtctggcatatgaacattactgattactaggtcaaaattg 435  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  2893165 atgtctggcatatgaacattgctgattactaggtcaaaattg 2893124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 138 - 278
Target Start/End: Original strand, 49060906 - 49061046
Alignment:
Q  138 ttcttcttcctaattacatgttgccaaatcatctgtacctctttcaatgtaacaggtttcagaagataatcacaagcaccatgatcaattcctttcatca 237  Q
    |||||||||||||||||||| ||||||||  ||| || ||| |  ||| | ||||||||||| ||||||||||| ||||||||   ||||||||||||||    
T  49060906 ttcttcttcctaattacatgctgccaaatgttctttagctcctctaatctcacaggtttcagcagataatcacaggcaccatgggaaattcctttcatca 49061005  T
Q  238 ccatccttggatcatcatttgcagaaaacactgaaatcaaa 278  Q
    ||| | ||| |||| ||| |||||| |||||||||||||||    
T  49061006 ccagctttgtatcaccatatgcagacaacactgaaatcaaa 49061046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 332 - 431
Target Start/End: Original strand, 49061165 - 49061264
Alignment:
Q  332 acttacctatgacaggtaggtccatctcaagtccaacaagctcaagaagcttaaatccatccatgtctggcatatgaacattactgattactaggtcaaa 431  Q
    |||||| |||||| || |||||||| |||||||| ||||| ||||| |||||||||||||||||||| ||||| || |||| ||||||||| ||||||||    
T  49061165 acttacttatgacgggaaggtccatttcaagtcccacaagttcaagcagcttaaatccatccatgtccggcatgtgtacatcactgattaccaggtcaaa 49061264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 404
Target Start/End: Original strand, 38953327 - 38953391
Alignment:
Q  340 atgacaggtaggtccatctcaagtccaacaagctcaagaagcttaaatccatccatgtctggcat 404  Q
    |||||||| || |||||||||||||||||| |||||||||| || || || |||||||| |||||    
T  38953327 atgacaggaagatccatctcaagtccaacatgctcaagaagtttgaaaccgtccatgtcaggcat 38953391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 431
Target Start/End: Original strand, 47281038 - 47281138
Alignment:
Q  331 aacttacctatgacaggtaggtccatctcaagtccaacaagctcaagaagcttaaatccatccatgtctggcatatgaacattactgattactaggtcaa 430  Q
    ||||||| ||||||||| || ||||| |||||||| ||||| || || ||||| | |||||||||||| ||||| ||||| | |  |||||| |||||||    
T  47281038 aacttacttatgacaggaagatccatttcaagtcctacaagttccagcagcttgagtccatccatgtcaggcatgtgaacttcagcgattaccaggtcaa 47281137  T
Q  431 a 431  Q
    |    
T  47281138 a 47281138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 331 - 431
Target Start/End: Complemental strand, 22085338 - 22085238
Alignment:
Q  331 aacttacctatgacaggtaggtccatctcaagtccaacaagctcaagaagcttaaatccatccatgtctggcatatgaacattactgattactaggtcaa 430  Q
    |||||||  |||||||||| |||||| |||||||| || | |||||| | |||||||||||||||||| ||||||   |||| |||||| || |||||||    
T  22085338 aacttactgatgacaggtaagtccatttcaagtcctaccaactcaagcaacttaaatccatccatgtcgggcatagccacatcactgataaccaggtcaa 22085239  T
Q  431 a 431  Q
    |    
T  22085238 a 22085238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 352 - 431
Target Start/End: Original strand, 54905480 - 54905559
Alignment:
Q  352 tccatctcaagtccaacaagctcaagaagcttaaatccatccatgtctggcatatgaacattactgattactaggtcaaa 431  Q
    ||||| |||||||||||  ||||||| ||||| || |||||||||||||||||   ||||| ||| ||||||||||||||    
T  54905480 tccatttcaagtccaacttgctcaaggagcttgaagccatccatgtctggcatgctaacatcactaattactaggtcaaa 54905559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 404
Target Start/End: Original strand, 54895042 - 54895106
Alignment:
Q  340 atgacaggtaggtccatctcaagtccaacaagctcaagaagcttaaatccatccatgtctggcat 404  Q
    |||| ||| ||||||||||||||||||||  ||||||| ||||| || |||||||| ||||||||    
T  54895042 atgaaaggcaggtccatctcaagtccaacttgctcaaggagcttgaaaccatccatttctggcat 54895106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 404
Target Start/End: Original strand, 54889425 - 54889483
Alignment:
Q  346 ggtaggtccatctcaagtccaacaagctcaagaagcttaaatccatccatgtctggcat 404  Q
    |||||||| || |||||||||||  ||||||| ||||| ||||||||||| ||||||||    
T  54889425 ggtaggtctatttcaagtccaacttgctcaaggagcttgaatccatccatttctggcat 54889483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 419
Target Start/End: Complemental strand, 50106774 - 50106737
Alignment:
Q  382 ttaaatccatccatgtctggcatatgaacattactgat 419  Q
    |||||||||||||||||||||||||| |||| ||||||    
T  50106774 ttaaatccatccatgtctggcatatgcacatcactgat 50106737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 404
Target Start/End: Complemental strand, 34316113 - 34316049
Alignment:
Q  340 atgacaggtaggtccatctcaagtccaacaagctcaagaagcttaaatccatccatgtctggcat 404  Q
    |||||||| || |||||||||||||||||| | |||||||| || || ||||||||||| |||||    
T  34316113 atgacaggaagatccatctcaagtccaacatgttcaagaagtttgaaaccatccatgtcaggcat 34316049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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