View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4847-Insertion-1 (Length: 881)

Name: NF4847-Insertion-1
Description: NF4847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4847-Insertion-1
NF4847-Insertion-1
[»] chr4 (3 HSPs)
chr4 (630-881)||(48517552-48517800)
chr4 (630-874)||(48514681-48514924)
chr4 (630-835)||(12704760-12704967)
[»] chr5 (3 HSPs)
chr5 (630-881)||(37075296-37075545)
chr5 (749-779)||(25215291-25215321)
chr5 (749-779)||(25279442-25279472)
[»] chr8 (2 HSPs)
chr8 (630-881)||(33293492-33293744)
chr8 (749-782)||(19954272-19954305)
[»] chr6 (3 HSPs)
chr6 (796-881)||(7373782-7373867)
chr6 (97-177)||(7368628-7368708)
chr6 (749-782)||(35129628-35129661)
[»] chr7 (1 HSPs)
chr7 (97-177)||(45632306-45632386)
[»] chr3 (5 HSPs)
chr3 (97-175)||(53159591-53159669)
chr3 (432-530)||(11766589-11766687)
chr3 (497-535)||(10442623-10442661)
chr3 (749-782)||(48432408-48432441)
chr3 (749-782)||(48435890-48435923)
[»] chr2 (2 HSPs)
chr2 (630-735)||(14918366-14918471)
chr2 (749-782)||(14104590-14104623)
[»] scaffold0018 (1 HSPs)
scaffold0018 (749-782)||(171777-171810)
[»] chr1 (3 HSPs)
chr1 (748-793)||(6789660-6789705)
chr1 (749-782)||(2493880-2493913)
chr1 (749-782)||(24159861-24159894)


Alignment Details
Target: chr4 (Bit Score: 94; Significance: 2e-45; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 630 - 881
Target Start/End: Original strand, 48517552 - 48517800
Alignment:
Q  630 tggaacatttcttgaacacttaaattgttgctacatacgtcgaatactttaaatcatttctttaaataatcaaactctaacacacacaaaataattttgt 729  Q
    |||||||||||||||||||||||||||||| |  | | |||||| |||| |||||||||||  ||| ||||||||| |||||||   |||||||| |  |    
T  48517552 tggaacatttcttgaacacttaaattgttgatgaacatgtcgaacacttgaaatcatttctgcaaagaatcaaactttaacaca---aaaataatatcat 48517648  T
Q  730 tagatacacaatataagccgagtcgcagactaggtcgctctctttaagacgttccgcgcctctgcatgaatgatgcaacaaatttttcttacctcgtcgt 829  Q
    |||||||| |||    || ||||||| ||||||||||||||||||||||||||| ||| |||||| |||||  ||||||| || |||||| |||||||||    
T  48517649 tagatacaaaattggggctgagtcgcggactaggtcgctctctttaagacgttctgcggctctgcctgaattgtgcaacagatctttcttgcctcgtcgt 48517748  T
Q  830 ccccaagataaaacaaccttttcaaacttgactatgagtactctctgcacaa 881  Q
    ||||| ||||||||| || |||||||||| | ||||| |||||| |||||||    
T  48517749 ccccaggataaaacagccctttcaaacttaagtatgactactctttgcacaa 48517800  T

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Target: chr4; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 630 - 874
Target Start/End: Original strand, 48514681 - 48514924
Alignment:
Q  630 tggaacatttcttgaacacttaaattgttgctacatacgtcgaatactttaaatcatttctttaaataatcaaactctaacacacacaaaataattttgt 729  Q
    |||| ||||||||||||||||||||||||| |  | | |||||| |||| |||||||||||  ||| ||||||||| ||||||| | |||||||| | ||    
T  48514681 tggaccatttcttgaacacttaaattgttgttgaacatgtcgaacacttgaaatcatttctgcaaagaatcaaactttaacacaaa-aaaataatatcgt 48514779  T
Q  730 tagatacacaatataagccgagtcgcagactaggtcgctctctttaagacgttccgcgcctctgcatgaatgatgcaacaaatttttcttacctcgtcgt 829  Q
    | |||||| |||    || ||||||||||||||||||||||||||||||||||||||| |||||| |||||  | ||| | || |||||| |||||||||    
T  48514780 tcgatacaaaattggggctgagtcgcagactaggtcgctctctttaagacgttccgcggctctgcctgaattgtacaatagatctttcttgcctcgtcgt 48514879  T
Q  830 ccccaagataaaacaaccttttcaaacttgactatgagtactctc 874  Q
    ||||| ||| |||||||| ||||||| |||| |||||| ||||||    
T  48514880 ccccaggatgaaacaaccctttcaaatttgagtatgagaactctc 48514924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 630 - 835
Target Start/End: Complemental strand, 12704967 - 12704760
Alignment:
Q  630 tggaacatttcttgaacactt-aaattgttgctacatacgtcgaatactttaaatcatttctttaaataat-caaactctaacacacacaaaataatttt 727  Q
    ||||||||||||||||||||| |||| |||| | |||  |||||| |||| ||| || ||||  ||| ||| ||||||  ||  |||||||||||||| |    
T  12704967 tggaacatttcttgaacactttaaatagttgttgcatctgtcgaacacttgaaaacaattctgcaaaaaattcaaacttgaaagcacacaaaataattat 12704868  T
Q  728 gttagatacacaatataagccgagtcgcagactaggtcgctctctttaagacgttccgcgcctctgcatgaatgatgcaacaaatttttcttacctcgtc 827  Q
    |||||||||| |||    || ||||||| ||||||||||||||||||||||| ||  ||| |||||| | |||| |||||||  | |||||| ||||||     
T  12704867 gttagatacaaaattcgggctgagtcgcggactaggtcgctctctttaagaccttttgcggctctgcctcaatggtgcaacatttatttcttgcctcgtt 12704768  T
Q  828 gtccccaa 835  Q
    ||||||||    
T  12704767 gtccccaa 12704760  T

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Target: chr5 (Bit Score: 89; Significance: 2e-42; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 630 - 881
Target Start/End: Original strand, 37075296 - 37075545
Alignment:
Q  630 tggaacatttcttgaacacttaaattgttgctacatacgtcgaatactttaaatcatttctttaaataatcaaactctaacacacacaaaataattttgt 729  Q
    |||||||||||||||||||||||||||||||| |||| |||||| |||| |||||||||||  ||| ||||||||| ||| ||| |  |||||| |||||    
T  37075296 tggaacatttcttgaacacttaaattgttgctgcatatgtcgaacacttgaaatcatttctgcaaagaatcaaactttaaaacata--aaataactttgt 37075393  T
Q  730 tagatacacaatataagccgagtcgcagactaggtcgctctctttaagacgttccgcgcctctgcatgaatgatgcaacaaatttttcttacctcgtcgt 829  Q
    |||||||| ||| | | | ||||   ||| || ||||||||||||||||||||| ||| |||||| |||||| ||||||| || ||||||  ||||||||    
T  37075394 tagatacaaaatttgaactgagttatagattatgtcgctctctttaagacgttctgcggctctgcctgaatggtgcaacatatatttcttggctcgtcgt 37075493  T
Q  830 ccccaagataaaacaaccttttcaaacttgactatgagtactctctgcacaa 881  Q
    | ||| |||||||||  | || ||||||| | |||||||||||| |||||||    
T  37075494 ctccaggataaaacattcattacaaacttaagtatgagtactctatgcacaa 37075545  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 749 - 779
Target Start/End: Complemental strand, 25215321 - 25215291
Alignment:
Q  749 gagtcgcagactaggtcgctctctttaagac 779  Q
    |||||||||||||||||||||||||||||||    
T  25215321 gagtcgcagactaggtcgctctctttaagac 25215291  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 749 - 779
Target Start/End: Complemental strand, 25279472 - 25279442
Alignment:
Q  749 gagtcgcagactaggtcgctctctttaagac 779  Q
    |||||||||||||||||||||||||||||||    
T  25279472 gagtcgcagactaggtcgctctctttaagac 25279442  T

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Target: chr8 (Bit Score: 85; Significance: 5e-40; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 630 - 881
Target Start/End: Original strand, 33293492 - 33293744
Alignment:
Q  630 tggaacatttcttgaacacttaaattgttgctacatacgtcgaatactttaaatcatttctttaaataatcaaactct-aacacacacaaaataattttg 728  Q
    |||||||||||||||||||||||| ||||||| ||||| ||||| |||| |||| ||||||  ||| ||||||||||| |||||||| |||||||||| |    
T  33293492 tggaacatttcttgaacacttaaaatgttgctgcatacatcgaacacttgaaattatttctgcaaaaaatcaaactcttaacacacaaaaaataatttcg 33293591  T
Q  729 ttagatacacaatataagccgagtcgcagactaggtcgctctctttaagacgttccgcgcctctgcatgaatgatgcaacaaatttttcttacctcgtcg 828  Q
    ||| ||||| ||| |  || ||||||||||||| ||| |||| ||||| | |||||| | |||||| |||||  | ||||| || |||||| ||||||||    
T  33293592 ttaaatacaaaatttgggctgagtcgcagactacgtcactctttttaatatgttccgtggctctgcctgaatagtacaacatatctttcttgcctcgtcg 33293691  T
Q  829 tccccaagataaaacaaccttttcaaacttgactatgagtactctctgcacaa 881  Q
    || |||  |||||||| |||||  |||||||  ||||||||||| ||||||||    
T  33293692 tctccataataaaacagcctttcaaaacttgtgtatgagtactcactgcacaa 33293744  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 749 - 782
Target Start/End: Original strand, 19954272 - 19954305
Alignment:
Q  749 gagtcgcagactaggtcgctctctttaagacgtt 782  Q
    |||||||||||||| |||||||||||||||||||    
T  19954272 gagtcgcagactagatcgctctctttaagacgtt 19954305  T

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Target: chr6 (Bit Score: 82; Significance: 3e-38; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 796 - 881
Target Start/End: Original strand, 7373782 - 7373867
Alignment:
Q  796 tgaatgatgcaacaaatttttcttacctcgtcgtccccaagataaaacaaccttttcaaacttgactatgagtactctctgcacaa 881  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  7373782 tgaatgatgcaacaaatttttcttacctcgtcgtccccaagataaaacaaccttttcaaacttgactatgagtactctttgcacaa 7373867  T

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Target: chr6; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 97 - 177
Target Start/End: Original strand, 7368628 - 7368708
Alignment:
Q  97 gttctttaataactagagtgaccgtggcagttaaggtgtcgccggtttgacattatgggcttcttccctttgtttctttaa 177  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7368628 gttctttaataactatagtgaccgtggcagttaaggtgtcgccggtttgacattatgggcttcttccctttgtttctttaa 7368708  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 749 - 782
Target Start/End: Original strand, 35129628 - 35129661
Alignment:
Q  749 gagtcgcagactaggtcgctctctttaagacgtt 782  Q
    ||||||||||||||||||||||||||||||||||    
T  35129628 gagtcgcagactaggtcgctctctttaagacgtt 35129661  T

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Target: chr7 (Bit Score: 73; Significance: 7e-33; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 97 - 177
Target Start/End: Original strand, 45632306 - 45632386
Alignment:
Q  97 gttctttaataactagagtgaccgtggcagttaaggtgtcgccggtttgacattatgggcttcttccctttgtttctttaa 177  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  45632306 gttctttaataactagagtgaccgtggcagttaaagtgtcgccggtttgacattatgggctttttccctttgtttctttaa 45632386  T

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Target: chr3 (Bit Score: 71; Significance: 1e-31; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 97 - 175
Target Start/End: Complemental strand, 53159669 - 53159591
Alignment:
Q  97 gttctttaataactagagtgaccgtggcagttaaggtgtcgccggtttgacattatgggcttcttccctttgtttcttt 175  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  53159669 gttctttaataactagagtgaccgtggcagttaaagtgtcgccggtttgacattatgggctttttccctttgtttcttt 53159591  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 432 - 530
Target Start/End: Original strand, 11766589 - 11766687
Alignment:
Q  432 aaatgaaactactcaaagcaagctccacgataacggtaaagcacatcatcaaactttgctatacctatttcattcttaattttagttttgacgattttt 530  Q
    ||||||||| ||| ||||||| ||||||||| |||||||| ||||||||  |||| || | | | ||||||||||||| |||||| |||||||||||||    
T  11766589 aaatgaaaccactgaaagcaaactccacgattacggtaaaacacatcattgaactatgttttgcttatttcattcttagttttaggtttgacgattttt 11766687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 497 - 535
Target Start/End: Complemental strand, 10442661 - 10442623
Alignment:
Q  497 tatttcattcttaattttagttttgacgatttttgtttc 535  Q
    ||||||||||||| |||||||||||||||||| ||||||    
T  10442661 tatttcattcttatttttagttttgacgatttctgtttc 10442623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 749 - 782
Target Start/End: Original strand, 48432408 - 48432441
Alignment:
Q  749 gagtcgcagactaggtcgctctctttaagacgtt 782  Q
    ||||||| ||||||||||||||||||||||||||    
T  48432408 gagtcgcggactaggtcgctctctttaagacgtt 48432441  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 749 - 782
Target Start/End: Complemental strand, 48435923 - 48435890
Alignment:
Q  749 gagtcgcagactaggtcgctctctttaagacgtt 782  Q
    ||||||| ||||||||||||||||||||||||||    
T  48435923 gagtcgcggactaggtcgctctctttaagacgtt 48435890  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 630 - 735
Target Start/End: Original strand, 14918366 - 14918471
Alignment:
Q  630 tggaacatttcttgaacac-ttaaattgttgctacatacgtcgaatactttaaatcatttctttaaataatcaaactctaacacacacaaaataattttg 728  Q
    ||||||||||||||||||| ||||||||||||| |||   ||||| ||||  ||| ||||||  ||| ||||| |||  |||||||| ||||||||||||    
T  14918366 tggaacatttcttgaacactttaaattgttgctgcatctatcgaacacttggaattatttctgcaaaaaatcatacttgaacacaca-aaaataattttg 14918464  T
Q  729 ttagata 735  Q
    |||||||    
T  14918465 ttagata 14918471  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 749 - 782
Target Start/End: Original strand, 14104590 - 14104623
Alignment:
Q  749 gagtcgcagactaggtcgctctctttaagacgtt 782  Q
    ||||||| ||||||||||||||||||||||||||    
T  14104590 gagtcgcggactaggtcgctctctttaagacgtt 14104623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 749 - 782
Target Start/End: Complemental strand, 171810 - 171777
Alignment:
Q  749 gagtcgcagactaggtcgctctctttaagacgtt 782  Q
    ||||||||||||||||||||||||||||||||||    
T  171810 gagtcgcagactaggtcgctctctttaagacgtt 171777  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 748 - 793
Target Start/End: Complemental strand, 6789705 - 6789660
Alignment:
Q  748 cgagtcgcagactaggtcgctctctttaagacgttccgcgcctctg 793  Q
    ||||||||||||||||| |||||||||||||||||| ||| |||||    
T  6789705 cgagtcgcagactaggttgctctctttaagacgttctgcgactctg 6789660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 749 - 782
Target Start/End: Complemental strand, 2493913 - 2493880
Alignment:
Q  749 gagtcgcagactaggtcgctctctttaagacgtt 782  Q
    |||||||| |||||||||||||||||||||||||    
T  2493913 gagtcgcaaactaggtcgctctctttaagacgtt 2493880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 749 - 782
Target Start/End: Complemental strand, 24159894 - 24159861
Alignment:
Q  749 gagtcgcagactaggtcgctctctttaagacgtt 782  Q
    ||||||| ||||||||||||||||||||||||||    
T  24159894 gagtcgcggactaggtcgctctctttaagacgtt 24159861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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