View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4847-Insertion-10 (Length: 220)
Name: NF4847-Insertion-10
Description: NF4847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4847-Insertion-10 |
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| [»] scaffold0640 (2 HSPs) |
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| [»] scaffold0271 (1 HSPs) |
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| [»] chr1 (3 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: scaffold0640 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 8 - 220
Target Start/End: Original strand, 2109 - 2321
Alignment:
| Q |
8 |
gcaacagccaaatcctgtcgactcctgcccacgaaaaaactggcacggacactgcattggaactgtcagtgttgagcaacctgtccgctgctacttctgc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2109 |
gcaacagccaaatcctgtcgactcctgcccacgaaaaaactggcacggacactgcattggaattgtcagtgttgagcaacctgtccgctgctacttctgc |
2208 |
T |
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| Q |
108 |
tgcttctaactatgtcatttcgagccaaatttcggacctccttccattcagcttgcagaaaaaacacaattcagaatctgacttgcatttaatattttct |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2209 |
tgcttctaactatgtcatttcgagccaaatttcggacctccttccattcagcttgcagaaaaaacacaattcagaatctgacttgcatttaatattttct |
2308 |
T |
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| Q |
208 |
ggctccaaatcca |
220 |
Q |
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||||||||||||| |
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| T |
2309 |
ggctccaaatcca |
2321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 29 - 220
Target Start/End: Original strand, 8775 - 8970
Alignment:
| Q |
29 |
ctcctgcccacgaaaa-aactggcacggacactgcattggaactgtcagtgttgagcaacctgtccgctgctacttctgctgcttctaactatgtcattt |
127 |
Q |
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|||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
8775 |
ctcctgcccatgaaaaaaactggcaccgacactgcattggaactgtcagtgttgagcaacctgtccgctgctacttctgagacttttaactatgtcattt |
8874 |
T |
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| Q |
128 |
cgagccaaatttcggacctccttccattcagcttgcagaaaaaacac--aattcagaatctgacttgc-atttaatattttctggctccaaatcca |
220 |
Q |
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| T |
8875 |
cgagccaagtttcaaacctccttacattcagcttgcagcaaaaatactaaattcagaatctgacatgcaattgatttttttctggcttcaaatcca |
8970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 220
Target Start/End: Original strand, 22596 - 22809
Alignment:
| Q |
8 |
gcaacagccaaatcctgtcgactcctgcccacgaaaaaactggcacggacactgcattggaactgtcagtgttgagcaacctgtccgctgctacttctgc |
107 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
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| T |
22596 |
gcaacagccaaatcatgtcgactcctgcccacgaaaaaactggcacggacactgcattgaaactgtcagtgttgagcaacctgtccggtgctacttctgc |
22695 |
T |
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| Q |
108 |
tgcttctaactatgtcatttcgagccaaatttcggacctccttccattcagcttgcag-aaaaaacacaattcagaatctgacttgcatttaatattttc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
22696 |
tgcttctaactatgtcatttcgagccaaatttcggacctccttccattcagcttgcagaaaaaaaaacaattcagaatctgacttgcatttaatattttc |
22795 |
T |
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| Q |
207 |
tggctccaaatcca |
220 |
Q |
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|||||||||||||| |
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| T |
22796 |
tggctccaaatcca |
22809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 220
Target Start/End: Complemental strand, 41408859 - 41408646
Alignment:
| Q |
8 |
gcaacagccaaatcctgtcgactcctgcccacgaaaaaactggcacggacactgcattggaactgtcagtgttgagcaacctgtccgctgctacttctgc |
107 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
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| T |
41408859 |
gcaacagccaaatcatgtcgactcctgcccacgaaaaaactggcacggacactgcattgaaactgtcagtgttgagcaacctgtccggtgctacttctgc |
41408760 |
T |
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| Q |
108 |
tgcttctaactatgtcatttcgagccaaatttcggacctccttccattcagcttgcagaa-aaaacacaattcagaatctgacttgcatttaatattttc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
41408759 |
tgcttctaactatgtcatttcgagccaaatttcggacctccttccattcagcttgcagaaaaaaaaacaattcagaatctgacttgcatttaatattttc |
41408660 |
T |
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| Q |
207 |
tggctccaaatcca |
220 |
Q |
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|||||||||||||| |
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| T |
41408659 |
tggctccaaatcca |
41408646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 41193747 - 41193563
Alignment:
| Q |
16 |
caaatcctgtcgactcctgcccacgaaaaaa-ctggcacggacactgcattggaactgtcagtgttgagcaacctgtccgctgctacttctgctgcttct |
114 |
Q |
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|||||||||| |||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
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| T |
41193747 |
caaatcctgttcgctcctgcccatgaaaaaaactggcaccgacactgcattggaactgtcagtgttgagcaacctgtccgctgctacttctgagactttt |
41193648 |
T |
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| Q |
115 |
aactatgtcatttcgagccaaatttcggacctccttccattcagcttgcagaaaaaacac--aattcagaatctgacttgcattt |
197 |
Q |
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||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||| || ||||||||||||||| ||||||| |
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| T |
41193647 |
aactatgtcatttcgagccaagtttcaaacctccttccattcagcttgcagcaaaaatactaaattcagaatctgacatgcattt |
41193563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 29 - 220
Target Start/End: Complemental strand, 1042662 - 1042467
Alignment:
| Q |
29 |
ctcctgcccacgaaaaaa-ctggcacggacactgcattggaactgtcagtgttgagcaacctgtccgctgctacttctgctgcttctaactatgtcattt |
127 |
Q |
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|||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
1042662 |
ctcctgcccatgaaaaaaactggcaccgacactgcattggaactgtcagtgttgagcaacctgtccgctgctacttctgagacttttaactatgtcattt |
1042563 |
T |
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| Q |
128 |
cgagccaaatttcggacctccttccattcagcttgcagaaaaaacac--aattcagaatctgacttgc-atttaatattttctggctccaaatcca |
220 |
Q |
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|||||||| |||| |||||||| |||||||||||||| ||||| || ||||||||||||||| ||| ||| | | |||||||||| |||||||| |
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| T |
1042562 |
cgagccaagtttcaaacctccttacattcagcttgcagcaaaaatactaaattcagaatctgacatgcaattgatttttttctggcttcaaatcca |
1042467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 29 - 220
Target Start/End: Complemental strand, 33324253 - 33324058
Alignment:
| Q |
29 |
ctcctgcccacgaaaaaa-ctggcacggacactgcattggaactgtcagtgttgagcaacctgtccgctgctacttctgctgcttctaactatgtcattt |
127 |
Q |
| |
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|||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
33324253 |
ctcctgcccatgaaaaaaactggcaccgacactgcattggaactgtcagtgttgagcaacctgtccgctgctacttctgagacttttaactatgtcattt |
33324154 |
T |
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| Q |
128 |
cgagccaaatttcggacctccttccattcagcttgcagaaaaaacac--aattcagaatctgacttgc-atttaatattttctggctccaaatcca |
220 |
Q |
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|||||||| |||| |||||||| |||||||||||||| ||||| || ||||||||||||||| ||| ||| | | |||||||||| |||||||| |
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| T |
33324153 |
cgagccaagtttcaaacctccttacattcagcttgcagcaaaaatactaaattcagaatctgacatgcaattgatttttttctggcttcaaatcca |
33324058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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