View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4847-Insertion-3 (Length: 824)
Name: NF4847-Insertion-3
Description: NF4847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4847-Insertion-3 |
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| [»] scaffold0662 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 8 - 496
Target Start/End: Original strand, 3532719 - 3533193
Alignment:
| Q |
8 |
gtactagtacatgtaaaaccatttaacaaatatattgaccaagaaagctcacaagtagtatacgtagcaaccattggtcgataccacgcttctgttgatg |
107 |
Q |
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| T |
3532719 |
gtactggtacatgtaaaacc-tttaacaaatatcttgaccaagaaagctcacaagtagtatacgtagcaaccatcggtcgataccacgcttctgttgatg |
3532817 |
T |
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| Q |
108 |
acacttctgttggtgaccatcacatagcccttctgtcgaataagggccaagaaatagatggagtgtcgaggcaagaagtgttgattgaaaattactcttg |
207 |
Q |
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| T |
3532818 |
acacttctgttggtgaccatcacatagcc-ttctgtcgaata--------------gatggagtgtcgaggcaagaagtgttgattgaaaattactcttg |
3532902 |
T |
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| Q |
208 |
accggtcaaggcgtataacatatatatggatgccactagaattggcttgaatgaggaaatgctttccctctacgatgttctatttgacattgcaattgtc |
307 |
Q |
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| T |
3532903 |
accggtcaaggcgtataacatatatatggatgtcactagaattggcttgaatgaggaaatgctttccctcttcgatgttctatttgacattgcaattgtc |
3533002 |
T |
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| Q |
308 |
ttgcaaaaaataatagccaatcttgtaccgtaaggcatcgcaaatgccaagaaaagcttatttggtgcaaacaacaaagtagacacgaaggtcgttgtca |
407 |
Q |
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| T |
3533003 |
ttgcaaacaataatagccaatcttgtaccgtaaggcatcgcaaatgccaagaaaagcttatttggtgcaaacaacaaagtagacacgaaggtcgttgtca |
3533102 |
T |
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| Q |
408 |
cttttggtgccaatgcaaagtataattggcagca--tagacaacacacacatgagagttcatcgcaacccataagcaaagcaacactcgct |
496 |
Q |
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| T |
3533103 |
cttttggtgccaatgcaaagtataattggcagcaagtagacaacacacacatgagagttcatcgcaacccataagcaaagcaacactcgct |
3533193 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 683 - 719
Target Start/End: Complemental strand, 45150339 - 45150303
Alignment:
| Q |
683 |
tagagaaatgatacttctacaactattttgtgacaac |
719 |
Q |
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| T |
45150339 |
tagagaaatgatacttatacaactattttgtgacaac |
45150303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0662 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0662
Description:
Target: scaffold0662; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 682 - 719
Target Start/End: Original strand, 1075 - 1112
Alignment:
| Q |
682 |
ttagagaaatgatacttctacaactattttgtgacaac |
719 |
Q |
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| T |
1075 |
ttagagaaatgatatttgtacaactattttgtgacaac |
1112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 682 - 719
Target Start/End: Original strand, 47014936 - 47014973
Alignment:
| Q |
682 |
ttagagaaatgatacttctacaactattttgtgacaac |
719 |
Q |
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| T |
47014936 |
ttagagaaatgatatttgtacaactattttgtgacaac |
47014973 |
T |
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