View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4847-Insertion-4 (Length: 774)
Name: NF4847-Insertion-4
Description: NF4847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4847-Insertion-4 |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-153; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 11 - 358
Target Start/End: Complemental strand, 39370241 - 39369911
Alignment:
| Q |
11 |
ataatattaacatttgttgttaaataagaagttattgactaaataaacaactaagtgtttaatattttctaatttagaattacatttaccaataatacca |
110 |
Q |
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| T |
39370241 |
ataatattaacatttgttgttaaa-aagaagttattgactaaataaacaactaagtgtttaatattttctaatttagaattacttttaccaata------ |
39370149 |
T |
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| Q |
111 |
tttcgcaatattattttaatgtcgaggaaaaggaatactttaagatgtaccttgggttccaatcaggatcaactacaatcacacgatctgctcttgtaag |
210 |
Q |
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| T |
39370148 |
----------ttattttaatgtcgaggaaaaggaatactttaagatgtaccttgggttccaatcaggatcaactacaataacacgatctgctcttgtaag |
39370059 |
T |
|
| Q |
211 |
tgtcaatcctatactaccaaccttagatgtcaagagaaatattggaggtccagcaacatcttggaaatcctgaaatcaaattagcagttagacaaggaaa |
310 |
Q |
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| T |
39370058 |
tgtcaatcctataccaccaaccttagatgtcaagagaaatattggaggtccagcaacatcttggaaatcctgaaatcaaattagcagttagacaaggaaa |
39369959 |
T |
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| Q |
311 |
agtaacacttggaggatttacaaaaattattgaatatgcaacatactt |
358 |
Q |
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| T |
39369958 |
agtaacacttggaggatttacaaaaattattgaatatgcaacatactt |
39369911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 139 - 515
Target Start/End: Complemental strand, 39356145 - 39355771
Alignment:
| Q |
139 |
aaaggaatactttaagatgtaccttgggttccaatcaggatcaactacaatcacacgatctgctcttgtaagtgtcaatcctatactaccaaccttagat |
238 |
Q |
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| T |
39356145 |
aaaggaatatttcaagaagtacctagggttccaagcaggatcaacaacaatcacacgatctgctcttgtaagtgtcagtcctaaaccaccaacttgagat |
39356046 |
T |
|
| Q |
239 |
gtcaagagaaatattggaggtccagcaacatcttggaaatcctgaaatcaaattagcagttagacaaggaaaagtaacacttggaggatttacaaaaatt |
338 |
Q |
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| T |
39356045 |
gtcagcagaaatattggagctccaacaccatcttgaaaatcctgaaatcaaattaacagttagacgaggaaaaatgacaattggaggatttaaaaccgtt |
39355946 |
T |
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| Q |
339 |
attgaatatgcaacatacttacatcaacaaatctttttctgtcacaggatattgttgtgccatccattcgtaaaaagtcgtaacctttggaagttatgca |
438 |
Q |
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| T |
39355945 |
actgaatatgcaaaatacttacatcaacaatttttattctgtcacatgattttgttgtgccatcaattcgtaaaaagtcataaccttgagatgttatgca |
39355846 |
T |
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| Q |
439 |
ttcctacaatcaattaacagaaacttttgaatcaactctcatatagaaatacacaataataaaatggtgcaaggaat |
515 |
Q |
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| T |
39355845 |
ttcctataataaattaacagaaaccttagaagattctctcatactgaa--acacagcaataaaatggtgcaaggaat |
39355771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 544 - 745
Target Start/End: Complemental strand, 39369814 - 39369613
Alignment:
| Q |
544 |
aaaatgacctcaaattattaaaattttatagaatcgctacctatgcacatcctagtccaactacaataattcaccaacagaccagaaatagttgagcaaa |
643 |
Q |
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| T |
39369814 |
aaaatgacctcaaattattaaaattttatagaatcgctacctatgcacatcctagtccaactacaataattcaccaacagaccagaaatagttgagcaaa |
39369715 |
T |
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| Q |
644 |
tgattgggtggtcgacagttt-tnnnnnnntatattgtaaaatacaaataggaagttatttctgaactgacctgaataaaatttagcatcatccgagtct |
742 |
Q |
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| T |
39369714 |
tgattgggtggtcgacagtttaaaaaaatatatattgtaaaatacaaata-gaagttatttctgaactgacctgaataaaattaagcatcatccgagtct |
39369616 |
T |
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| Q |
743 |
gag |
745 |
Q |
| |
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||| |
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| T |
39369615 |
gag |
39369613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 387 - 461
Target Start/End: Complemental strand, 39369908 - 39369834
Alignment:
| Q |
387 |
atattgttgtgccatccattcgtaaaaagtcgtaacctttggaagttatgcattcctacaatcaattaacagaaa |
461 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39369908 |
atattgttgtgccatccattcgtaaaaagtcgtaacctttggaagttatgcattcctacaatcaattaacagaaa |
39369834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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