View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4847-Insertion-5 (Length: 735)

Name: NF4847-Insertion-5
Description: NF4847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4847-Insertion-5
NF4847-Insertion-5
[»] chr7 (2 HSPs)
chr7 (7-296)||(30505703-30505992)
chr7 (358-432)||(30506052-30506126)
[»] chr4 (4 HSPs)
chr4 (134-296)||(1541059-1541221)
chr4 (134-296)||(1545357-1545519)
chr4 (358-432)||(1540923-1540997)
chr4 (358-432)||(1545221-1545295)
[»] chr1 (6 HSPs)
chr1 (134-296)||(26400692-26400854)
chr1 (134-296)||(26404990-26405152)
chr1 (122-296)||(28914335-28914509)
chr1 (358-437)||(28914194-28914273)
chr1 (358-432)||(26404854-26404928)
chr1 (358-432)||(26400556-26400630)
[»] chr6 (4 HSPs)
chr6 (134-296)||(7033761-7033923)
chr6 (134-296)||(7038061-7038223)
chr6 (358-432)||(7033625-7033699)
chr6 (358-432)||(7037925-7037999)
[»] chr5 (4 HSPs)
chr5 (134-296)||(17793181-17793343)
chr5 (134-296)||(17797479-17797641)
chr5 (358-432)||(17793045-17793119)
chr5 (358-432)||(17797343-17797417)


Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 7 - 296
Target Start/End: Original strand, 30505703 - 30505992
Alignment:
Q  7 aataagaactattattacagaggggatatatgaaacggtttcgtgactaaggtgtggagtagtaaaggaatgaagatacggaggggtcaacggttccatc 106  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30505703 aataagaactattattatagaggggatatatgaaacggtttcgtgactagggtgtggagtagtaaaggaatgaagatacggaggggtcaacggttccatc 30505802  T
Q  107 tgcgtgctcaacatagaaactgttgttattttgtaaagttgcagaggaaaagattaaaggtagttgctagaacaagtggaagaagagtatgtttttcatt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30505803 tgcgtgctcaacatagaaactgttgttattttgtaaagttgcagaggaaaagattaaaggtagttgctagaacaagtggaagaagagtatgtttttcatt 30505902  T
Q  207 caattcaaacttacaaatagagaagtacagaatagaaaataactgcccattgatatcatgttcctataagttaggccacgacagaatact 296  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30505903 caattcaaacgtacaaatagaaaagtacagaatagaaaataactgcccattgatatcatgttcctataagttaggccacgacagaatact 30505992  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 358 - 432
Target Start/End: Original strand, 30506052 - 30506126
Alignment:
Q  358 atatttaaaatattcaaaacagaagtaaaataaactccatagacgtggcagcagttctaaacacaatagctaaca 432  Q
    |||||||||| ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||    
T  30506052 atatttaaaagattcaaaacagaagtaaaataaactctgcagacgtggcagcagttctaaacacaatagctaaca 30506126  T

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Target: chr4 (Bit Score: 123; Significance: 8e-63; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 134 - 296
Target Start/End: Complemental strand, 1541221 - 1541059
Alignment:
Q  134 attttgtaaagttgcagaggaaaagattaaaggtagttgctagaacaagtggaagaagagtatgtttttcattcaattcaaacttacaaatagagaagta 233  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||| | ||||||||||||| |||||||||| |||||    
T  1541221 attttgtaaagttgcagaggaaaagattaaaggtggttgctagaacaagtggaagaagagtaaatttcttattcaattcaaacgtacaaatagaaaagta 1541122  T
Q  234 cagaatagaaaataactgcccattgatatcatgttcctataagttaggccacgacagaatact 296  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||    
T  1541121 cagaatagaaaataactgcccactaatatcatgttcctataagttaggccacgatagaatact 1541059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 134 - 296
Target Start/End: Complemental strand, 1545519 - 1545357
Alignment:
Q  134 attttgtaaagttgcagaggaaaagattaaaggtagttgctagaacaagtggaagaagagtatgtttttcattcaattcaaacttacaaatagagaagta 233  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||  ||| | ||||||||||||| |||||||||| |||||    
T  1545519 attttgtaaagttgcagaggaaaagattaaaggtggttgctagaacaagtggaagaaaagtaaatttcttattcaattcaaacgtacaaatagaaaagta 1545420  T
Q  234 cagaatagaaaataactgcccattgatatcatgttcctataagttaggccacgacagaatact 296  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||    
T  1545419 cagaatagaaaataactgcccactaatatcatgttcctataagttaggccacgatagaatact 1545357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 358 - 432
Target Start/End: Complemental strand, 1540997 - 1540923
Alignment:
Q  358 atatttaaaatattcaaaacagaagtaaaataaactccatagacgtggcagcagttctaaacacaatagctaaca 432  Q
    ||||||||||||||||||| |||| |||||| ||||| | | ||||||||||||||||||||||||||| |||||    
T  1540997 atatttaaaatattcaaaatagaattaaaatgaactcaacaaacgtggcagcagttctaaacacaatagttaaca 1540923  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 358 - 432
Target Start/End: Complemental strand, 1545295 - 1545221
Alignment:
Q  358 atatttaaaatattcaaaacagaagtaaaataaactccatagacgtggcagcagttctaaacacaatagctaaca 432  Q
    |||||||||||||||||||||||| |||||| |||||   | ||||||||||||||||||||||||||| |||||    
T  1545295 atatttaaaatattcaaaacagaattaaaatgaactcagcaaacgtggcagcagttctaaacacaatagttaaca 1545221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 123; Significance: 8e-63; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 134 - 296
Target Start/End: Complemental strand, 26400854 - 26400692
Alignment:
Q  134 attttgtaaagttgcagaggaaaagattaaaggtagttgctagaacaagtggaagaagagtatgtttttcattcaattcaaacttacaaatagagaagta 233  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||| | ||||||||||||| |||||||||| |||||    
T  26400854 attttgtaaagttgcagaggaaaagattaaaggtggttgctagaacaagtggaagaagagtaaatttcttattcaattcaaacgtacaaatagaaaagta 26400755  T
Q  234 cagaatagaaaataactgcccattgatatcatgttcctataagttaggccacgacagaatact 296  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||    
T  26400754 cagaatagaaaataactgcccactaatatcatgttcctataagttaggccacgatagaatact 26400692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 134 - 296
Target Start/End: Complemental strand, 26405152 - 26404990
Alignment:
Q  134 attttgtaaagttgcagaggaaaagattaaaggtagttgctagaacaagtggaagaagagtatgtttttcattcaattcaaacttacaaatagagaagta 233  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||| | ||||||||||||| |||||||||| |||||    
T  26405152 attttgtaaagttgcagaggaaaagattaaaggtggttgctagaacaagtggaagaagagtaaatttcttattcaattcaaacgtacaaatagaaaagta 26405053  T
Q  234 cagaatagaaaataactgcccattgatatcatgttcctataagttaggccacgacagaatact 296  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||    
T  26405052 cagaatagaaaataactgcccactaatatcatgttcctataagttaggccacgatagaatact 26404990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 122 - 296
Target Start/End: Complemental strand, 28914509 - 28914335
Alignment:
Q  122 gaaactgttgttattttgtaaagttgcagaggaaaagattaaaggtagttgctagaacaagtggaagaagagtatgtttttcattcaattcaaacttaca 221  Q
    ||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||   || | ||||||||||||| ||||    
T  28914509 gaaactgttatgattttgtaaagttgcagaggaaaagattaaaggtggttgctagaacaagtggaagaagagtaaaattcttattcaattcaaacgtaca 28914410  T
Q  222 aatagagaagtacagaatagaaaataactgcccattgatatcatgttcctataagttaggccacgacagaatact 296  Q
    |||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||    
T  28914409 aatagaaaagtacagaatagaaaataactgcccactaatatcatgttcctataagttaggccacgatagaatact 28914335  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 358 - 437
Target Start/End: Complemental strand, 28914273 - 28914194
Alignment:
Q  358 atatttaaaatattcaaaacagaagtaaaataaactccatagacgtggcagcagttctaaacacaatagctaacaaaaac 437  Q
    |||||||||||||||||||||||| |||||| |||||   | ||||||||||||||||||||||||||| ||||| ||||    
T  28914273 atatttaaaatattcaaaacagaattaaaatgaactcagcaaacgtggcagcagttctaaacacaatagttaacagaaac 28914194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 358 - 432
Target Start/End: Complemental strand, 26404928 - 26404854
Alignment:
Q  358 atatttaaaatattcaaaacagaagtaaaataaactccatagacgtggcagcagttctaaacacaatagctaaca 432  Q
    |||||||||||||||||||||||| |||||| |||||   | ||||||||||||||||||||||||||| |||||    
T  26404928 atatttaaaatattcaaaacagaattaaaatgaactcagcaaacgtggcagcagttctaaacacaatagttaaca 26404854  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 358 - 432
Target Start/End: Complemental strand, 26400630 - 26400556
Alignment:
Q  358 atatttaaaatattcaaaacagaagtaaaataaactccatagacgtggcagcagttctaaacacaatagctaaca 432  Q
    ||||||||||||||||||| |||| |||||| |||||   | ||||||||||||||||||||||||||| |||||    
T  26400630 atatttaaaatattcaaaatagaattaaaatgaactcagcaaacgtggcagcagttctaaacacaatagttaaca 26400556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 119; Significance: 2e-60; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 134 - 296
Target Start/End: Complemental strand, 7033923 - 7033761
Alignment:
Q  134 attttgtaaagttgcagaggaaaagattaaaggtagttgctagaacaagtggaagaagagtatgtttttcattcaattcaaacttacaaatagagaagta 233  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||  ||| | ||||||||||||| |||||||||| |||||    
T  7033923 attttgtaaagttgcagaggaaaagattaaaggtggttgctagaacaagtggaagaaaagtaaatttcttattcaattcaaacgtacaaatagaaaagta 7033824  T
Q  234 cagaatagaaaataactgcccattgatatcatgttcctataagttaggccacgacagaatact 296  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||    
T  7033823 cagaatagaaaataactgcccactaatatcatgttcctataagttaggccacgatagaatact 7033761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 134 - 296
Target Start/End: Complemental strand, 7038223 - 7038061
Alignment:
Q  134 attttgtaaagttgcagaggaaaagattaaaggtagttgctagaacaagtggaagaagagtatgtttttcattcaattcaaacttacaaatagagaagta 233  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||| | ||||||||||||| |||||||||| |||||    
T  7038223 attttgtaaagttgcagaggaaaagattaaaggtggttgctagaacaagtggaagaagagtaaatttcttattcaattcaaacgtacaaatagaaaagta 7038124  T
Q  234 cagaatagaaaataactgcccattgatatcatgttcctataagttaggccacgacagaatact 296  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||| | ||||||||    
T  7038123 cagaatagaaaataactgcccactaatatcatgttcctataagttaggccacaatagaatact 7038061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 358 - 432
Target Start/End: Complemental strand, 7033699 - 7033625
Alignment:
Q  358 atatttaaaatattcaaaacagaagtaaaataaactccatagacgtggcagcagttctaaacacaatagctaaca 432  Q
    |||||||||||||||||||||||| |||||| |||||   | ||||||||||||||||||||||||||| |||||    
T  7033699 atatttaaaatattcaaaacagaattaaaatgaactcagcaaacgtggcagcagttctaaacacaatagttaaca 7033625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 358 - 432
Target Start/End: Complemental strand, 7037999 - 7037925
Alignment:
Q  358 atatttaaaatattcaaaacagaagtaaaataaactccatagacgtggcagcagttctaaacacaatagctaaca 432  Q
    |||||||||||||||||||||||| |||||| |||||   | ||||||||||||||||||||||||||| |||||    
T  7037999 atatttaaaatattcaaaacagaattaaaatgaactcagcaaacgtggcagcagttctaaacacaatagttaaca 7037925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 119; Significance: 2e-60; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 134 - 296
Target Start/End: Complemental strand, 17793343 - 17793181
Alignment:
Q  134 attttgtaaagttgcagaggaaaagattaaaggtagttgctagaacaagtggaagaagagtatgtttttcattcaattcaaacttacaaatagagaagta 233  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||| | ||||||||||||| |||||||||| |||||    
T  17793343 attttgtaaagttgcagaggaaaagattaaaggtggttgctagaacaagtggaagaagagtaaatttgttattcaattcaaacgtacaaatagaaaagta 17793244  T
Q  234 cagaatagaaaataactgcccattgatatcatgttcctataagttaggccacgacagaatact 296  Q
    ||||||||| |||||||||||| | ||||||||||||||||||||||||||||| ||||||||    
T  17793243 cagaatagacaataactgcccactaatatcatgttcctataagttaggccacgatagaatact 17793181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 134 - 296
Target Start/End: Complemental strand, 17797641 - 17797479
Alignment:
Q  134 attttgtaaagttgcagaggaaaagattaaaggtagttgctagaacaagtggaagaagagtatgtttttcattcaattcaaacttacaaatagagaagta 233  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||| | ||||||||||||| |||||||||| |||||    
T  17797641 attttgtaaagttgcagaggaaaagattaaaggtggttgctagaacaagtggaagaagagtaaatttgttattcaattcaaacgtacaaatagaaaagta 17797542  T
Q  234 cagaatagaaaataactgcccattgatatcatgttcctataagttaggccacgacagaatact 296  Q
    ||||||||| |||||||||||| | ||||||||||||||||||||||||||||| ||||||||    
T  17797541 cagaatagacaataactgcccactaatatcatgttcctataagttaggccacgatagaatact 17797479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 358 - 432
Target Start/End: Complemental strand, 17793119 - 17793045
Alignment:
Q  358 atatttaaaatattcaaaacagaagtaaaataaactccatagacgtggcagcagttctaaacacaatagctaaca 432  Q
    |||||||||||||||||||||||| |||||| |||||   | ||||||||||||||||||||||||||| |||||    
T  17793119 atatttaaaatattcaaaacagaattaaaatgaactcagcaaacgtggcagcagttctaaacacaatagttaaca 17793045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 358 - 432
Target Start/End: Complemental strand, 17797417 - 17797343
Alignment:
Q  358 atatttaaaatattcaaaacagaagtaaaataaactccatagacgtggcagcagttctaaacacaatagctaaca 432  Q
    |||||||||||||||||||||||| |||||| |||||   | ||||||||||||||||||||||||||| |||||    
T  17797417 atatttaaaatattcaaaacagaattaaaatgaactcagcaaacgtggcagcagttctaaacacaatagttaaca 17797343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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