View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4847-Insertion-7 (Length: 606)

Name: NF4847-Insertion-7
Description: NF4847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4847-Insertion-7
NF4847-Insertion-7
[»] chr7 (31 HSPs)
chr7 (8-548)||(46621754-46622311)
chr7 (543-606)||(15654297-15654360)
chr7 (543-606)||(21277642-21277705)
chr7 (543-594)||(19402705-19402756)
chr7 (543-606)||(46623189-46623252)
chr7 (420-494)||(5800447-5800521)
chr7 (565-606)||(28326863-28326904)
chr7 (422-494)||(1787154-1787226)
chr7 (444-498)||(20055830-20055884)
chr7 (444-498)||(23653636-23653689)
chr7 (420-498)||(36609636-36609714)
chr7 (514-543)||(581657-581686)
chr7 (514-543)||(581932-581961)
chr7 (514-543)||(2275070-2275099)
chr7 (445-494)||(4550511-4550560)
chr7 (514-543)||(6474654-6474683)
chr7 (514-543)||(8790960-8790989)
chr7 (514-543)||(9334861-9334890)
chr7 (565-606)||(12383169-12383210)
chr7 (514-543)||(19371884-19371913)
chr7 (514-543)||(21634816-21634845)
chr7 (514-543)||(21763315-21763344)
chr7 (514-543)||(27240900-27240929)
chr7 (514-543)||(30240719-30240748)
chr7 (565-606)||(30385707-30385748)
chr7 (514-543)||(33428977-33429006)
chr7 (514-543)||(36609724-36609753)
chr7 (514-543)||(38598431-38598460)
chr7 (514-543)||(47901891-47901920)
chr7 (514-543)||(48103566-48103595)
chr7 (514-542)||(7774890-7774918)
[»] chr2 (12 HSPs)
chr2 (543-606)||(45421003-45421066)
chr2 (547-606)||(31086228-31086287)
chr2 (552-606)||(32145397-32145451)
chr2 (519-548)||(7929447-7929476)
chr2 (514-543)||(9245092-9245121)
chr2 (514-543)||(13450309-13450338)
chr2 (514-543)||(14371549-14371578)
chr2 (514-543)||(33313131-33313160)
chr2 (514-543)||(34063384-34063413)
chr2 (514-543)||(34576292-34576321)
chr2 (514-543)||(39997365-39997394)
chr2 (422-494)||(8062604-8062675)
[»] chr1 (38 HSPs)
chr1 (544-606)||(17921601-17921663)
chr1 (543-606)||(36305270-36305333)
chr1 (543-606)||(36928653-36928716)
chr1 (543-606)||(4644500-4644563)
chr1 (543-606)||(25640055-25640118)
chr1 (543-606)||(9528342-9528406)
chr1 (543-606)||(21527648-21527712)
chr1 (543-606)||(14366213-14366277)
chr1 (543-606)||(52336150-52336213)
chr1 (420-490)||(1580999-1581069)
chr1 (445-494)||(46880217-46880266)
chr1 (561-606)||(47115793-47115838)
chr1 (543-606)||(48266307-48266371)
chr1 (547-606)||(28053891-28053950)
chr1 (513-543)||(8574174-8574204)
chr1 (514-544)||(8699432-8699462)
chr1 (439-493)||(11409182-11409236)
chr1 (444-494)||(44667965-44668015)
chr1 (514-543)||(5935709-5935738)
chr1 (514-543)||(7491180-7491209)
chr1 (514-543)||(9390116-9390145)
chr1 (514-543)||(15790342-15790371)
chr1 (514-543)||(23929175-23929204)
chr1 (514-543)||(28041580-28041609)
chr1 (514-543)||(31526406-31526435)
chr1 (514-543)||(32305714-32305743)
chr1 (514-543)||(33194050-33194079)
chr1 (444-493)||(33194093-33194142)
chr1 (514-543)||(39728382-39728411)
chr1 (514-543)||(41187865-41187894)
chr1 (514-543)||(43577374-43577403)
chr1 (514-543)||(44667892-44667921)
chr1 (514-543)||(45943451-45943480)
chr1 (514-543)||(46273386-46273415)
chr1 (514-543)||(50944516-50944545)
chr1 (514-543)||(51184795-51184824)
chr1 (514-542)||(11345096-11345124)
chr1 (515-543)||(43723762-43723790)
[»] chr3 (33 HSPs)
chr3 (543-598)||(38542814-38542869)
chr3 (543-606)||(30167937-30168000)
chr3 (543-606)||(32004468-32004531)
chr3 (543-606)||(13447967-13448030)
chr3 (411-467)||(3266719-3266775)
chr3 (514-548)||(36717051-36717085)
chr3 (268-313)||(18385858-18385903)
chr3 (48-139)||(18386040-18386135)
chr3 (514-544)||(3266820-3266850)
chr3 (513-543)||(26224020-26224050)
chr3 (514-548)||(38809195-38809229)
chr3 (514-543)||(5530769-5530798)
chr3 (569-606)||(7146553-7146590)
chr3 (514-543)||(7252177-7252206)
chr3 (514-543)||(8149426-8149455)
chr3 (514-543)||(19420026-19420055)
chr3 (514-543)||(19579185-19579214)
chr3 (514-543)||(19592012-19592041)
chr3 (514-543)||(21078798-21078827)
chr3 (565-606)||(23601280-23601321)
chr3 (514-543)||(28370537-28370566)
chr3 (514-543)||(28378359-28378388)
chr3 (514-543)||(28386177-28386206)
chr3 (514-543)||(35380018-35380047)
chr3 (514-543)||(39903810-39903839)
chr3 (514-543)||(40360450-40360479)
chr3 (514-543)||(41817346-41817375)
chr3 (514-543)||(45644281-45644310)
chr3 (514-543)||(46731778-46731807)
chr3 (514-543)||(50099168-50099197)
chr3 (418-470)||(15522676-15522728)
chr3 (421-493)||(21091777-21091849)
chr3 (451-491)||(22526242-22526282)
[»] scaffold0418 (1 HSPs)
scaffold0418 (543-606)||(7160-7223)
[»] chr8 (19 HSPs)
chr8 (543-606)||(7451838-7451901)
chr8 (543-606)||(12531167-12531230)
chr8 (543-606)||(12220724-12220787)
chr8 (543-606)||(19385299-19385362)
chr8 (513-543)||(1759527-1759557)
chr8 (444-498)||(12838767-12838821)
chr8 (513-543)||(13150104-13150134)
chr8 (451-493)||(32856441-32856483)
chr8 (420-494)||(42862764-42862838)
chr8 (514-543)||(1554927-1554956)
chr8 (514-543)||(3825354-3825383)
chr8 (514-543)||(4414943-4414972)
chr8 (514-543)||(5626031-5626060)
chr8 (514-543)||(10865089-10865118)
chr8 (514-543)||(21307037-21307066)
chr8 (514-543)||(28205590-28205619)
chr8 (514-543)||(30264104-30264133)
chr8 (514-543)||(30800485-30800514)
chr8 (514-543)||(34968121-34968150)
[»] chr4 (30 HSPs)
chr4 (543-606)||(7663830-7663893)
chr4 (543-594)||(1121580-1121631)
chr4 (543-606)||(3130568-3130631)
chr4 (420-494)||(6196828-6196902)
chr4 (543-603)||(5817773-5817834)
chr4 (543-606)||(8655662-8655726)
chr4 (423-498)||(26878416-26878491)
chr4 (420-495)||(31139132-31139207)
chr4 (420-492)||(2290849-2290921)
chr4 (543-606)||(47540413-47540476)
chr4 (514-548)||(21053986-21054020)
chr4 (513-543)||(38364741-38364771)
chr4 (513-543)||(41169326-41169356)
chr4 (423-469)||(51610329-51610375)
chr4 (513-543)||(55117802-55117832)
chr4 (514-543)||(549157-549186)
chr4 (445-494)||(669832-669881)
chr4 (514-543)||(4958780-4958809)
chr4 (514-543)||(5662263-5662292)
chr4 (514-543)||(7712754-7712783)
chr4 (565-606)||(12776800-12776841)
chr4 (514-543)||(13781634-13781663)
chr4 (565-606)||(20673216-20673257)
chr4 (453-494)||(21796493-21796534)
chr4 (514-543)||(23091197-23091226)
chr4 (514-543)||(26878502-26878531)
chr4 (514-543)||(37143199-37143228)
chr4 (514-543)||(44470391-44470420)
chr4 (451-492)||(46224346-46224387)
chr4 (515-543)||(34659397-34659425)
[»] chr5 (15 HSPs)
chr5 (420-494)||(38455269-38455343)
chr5 (410-498)||(9524087-9524175)
chr5 (543-606)||(10487495-10487559)
chr5 (420-489)||(42208036-42208105)
chr5 (420-493)||(833999-834070)
chr5 (514-543)||(831845-831874)
chr5 (514-543)||(834602-834631)
chr5 (514-543)||(4326227-4326256)
chr5 (514-543)||(7938008-7938037)
chr5 (514-543)||(10721617-10721646)
chr5 (514-543)||(38445457-38445486)
chr5 (514-543)||(41613196-41613225)
chr5 (515-543)||(5026360-5026388)
chr5 (517-545)||(6062151-6062179)
chr5 (514-542)||(42097649-42097677)
[»] chr6 (11 HSPs)
chr6 (543-606)||(1682528-1682591)
chr6 (543-606)||(33629586-33629649)
chr6 (420-494)||(19145962-19146036)
chr6 (513-543)||(10343283-10343313)
chr6 (451-497)||(12169703-12169749)
chr6 (514-548)||(14965382-14965416)
chr6 (514-543)||(7451602-7451631)
chr6 (514-543)||(20715993-20716022)
chr6 (514-543)||(22838216-22838245)
chr6 (514-543)||(31862002-31862031)
chr6 (515-543)||(34905214-34905242)
[»] scaffold1246 (1 HSPs)
scaffold1246 (420-494)||(2166-2240)
[»] scaffold0012 (1 HSPs)
scaffold0012 (543-606)||(48547-48610)
[»] scaffold0220 (1 HSPs)
scaffold0220 (543-606)||(22802-22866)
[»] scaffold0268 (1 HSPs)
scaffold0268 (444-494)||(21407-21457)
[»] scaffold0029 (1 HSPs)
scaffold0029 (543-589)||(135243-135289)
[»] scaffold0002 (2 HSPs)
scaffold0002 (543-589)||(313070-313116)
scaffold0002 (543-589)||(328524-328570)
[»] scaffold0003 (1 HSPs)
scaffold0003 (514-543)||(227560-227589)
[»] scaffold0583 (1 HSPs)
scaffold0583 (442-494)||(864-916)


Alignment Details
Target: chr7 (Bit Score: 384; Significance: 0; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 8 - 548
Target Start/End: Original strand, 46621754 - 46622311
Alignment:
Q  8 gaaacatcttttttgtataatatttatacgattatactattattatatacaaataatcttatccttgttatgtgtctccaaatgaggtctatgattcaat 107  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  46621754 gaaacatcttatttgtataatatttatacgattatactattattatatacaaataatcttatccttgatatgtgtctccaaatgaggtctatgattcaat 46621853  T
Q  108 ctttgctactaacattttcctcctcctctctatattttatctataaagagaaaagttatgctagcaacactaactttt-taaagtttgcctttttattat 206  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||    
T  46621854 ctttgctactaacattttcctcctcctctctaaattttatctataaagagaaaagttatgctatcaacactaacttttttaaagttcgcctttttattat 46621953  T
Q  207 tgctgaaattaatacgagtccatcgataatgacatctcgtaaaataatcaaattaacatagttttcatctaataaaagagtgaatgtttgaaataaatga 306  Q
    ||||||||||||||||| ||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  46621954 tgctgaaattaatacgaatccatcgataatgacatcttgtaaaacagtcaaattaacatagttttcatctaataaaagagtgaatgtttaaaataaatga 46622053  T
Q  307 gcattagcaaaatattatgtaactcatgtttggttatgttgaagatctaaccattcaaatttactaggttagagtatgtgtttccaaagt---------- 396  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||              
T  46622054 gcattagcaaaacattatgtaactcatgtttggttatgttgaagatctaaccattcaaatttattaggttagagtatgtgtttccaaagttattctttcc 46622153  T
Q  397 -------tattggtagtgcaaattatattgactagcgaaaagacggacacgtgagtgtccttctttccgttctttttatttcattaaagtttgaaaatta 489  Q
           |||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  46622154 aacacactatttgtagtgcaaattatattgattagcgaaaagacggacacgtgagtgtctttctttccgttctttttatttcattaaagtttgaaaatta 46622253  T
Q  490 tgaacaatgnnnnnnnnnnnnnnaatgaaattttgattttgattaaaactaaaatataa 548  Q
    |||| ||||              ||||||||||||||||||||||||||||||||||||    
T  46622254 tgaataatg-ttttttttttttaaatgaaattttgattttgattaaaactaaaatataa 46622311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 543 - 606
Target Start/End: Complemental strand, 15654360 - 15654297
Alignment:
Q  543 atataacaaagcagtccctagagcacaaggtgtgccttagagactactacaggaaccaagagtt 606  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  15654360 atataacaaagcagtccctagagcacaaggtgtgtcttagagactactacaggaaccaagagtt 15654297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 543 - 606
Target Start/End: Complemental strand, 21277705 - 21277642
Alignment:
Q  543 atataacaaagcagtccctagagcacaaggtgtgccttagagactactacaggaaccaagagtt 606  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  21277705 atataacaaagcagtccctagagcacaaggtgtgccttagacactaccacaggaaccaagagtt 21277642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 543 - 594
Target Start/End: Original strand, 19402705 - 19402756
Alignment:
Q  543 atataacaaagcagtccctagagcacaaggtgtgccttagagactactacag 594  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19402705 atataacaaagcagtccctagagcacaaggtgtgccttagagactactacag 19402756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 543 - 606
Target Start/End: Original strand, 46623189 - 46623252
Alignment:
Q  543 atataacaaagcagtccctagagcacaaggtgtgccttagagactactacaggaaccaagagtt 606  Q
    |||||||||||||||||||| |||| || ||||| |||||||||||||||||||| ||||||||    
T  46623189 atataacaaagcagtccctacagcataaagtgtgtcttagagactactacaggaatcaagagtt 46623252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 420 - 494
Target Start/End: Complemental strand, 5800521 - 5800447
Alignment:
Q  420 actagcgaaaagacggacacgtgagtgtccttctttccgttctttttatttcattaaagtttgaaaattatgaac 494  Q
    ||||||||||||||||||||    |||||| |||||||| |||||||||| |  ||| |||||||||||||||||    
T  5800521 actagcgaaaagacggacactcacgtgtccgtctttccgctctttttattgcgctaatgtttgaaaattatgaac 5800447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 565 - 606
Target Start/End: Original strand, 28326863 - 28326904
Alignment:
Q  565 gcacaaggtgtgccttagagactactacaggaaccaagagtt 606  Q
    ||||||||||||||||||||||||| |||| |||||||||||    
T  28326863 gcacaaggtgtgccttagagactaccacagaaaccaagagtt 28326904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 422 - 494
Target Start/End: Complemental strand, 1787226 - 1787154
Alignment:
Q  422 tagcgaaaagacggacacgtgagtgtccttctttccgttctttttatttcattaaagtttgaaaattatgaac 494  Q
    ||||||||||||||||||    |||||| |||||||| |||||| ||| | |||| |||||||||||||||||    
T  1787226 tagcgaaaagacggacactcacgtgtccgtctttccgctcttttaattgcgttaacgtttgaaaattatgaac 1787154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 444 - 498
Target Start/End: Complemental strand, 20055884 - 20055830
Alignment:
Q  444 gtgtccttctttccgttctttttatttcattaaagtttgaaaattatgaacaatg 498  Q
    |||||| ||||| ||||||||||||| | ||||  ||||||||||||||||||||    
T  20055884 gtgtccgtctttgcgttctttttattgcgttaatatttgaaaattatgaacaatg 20055830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 444 - 498
Target Start/End: Complemental strand, 23653689 - 23653636
Alignment:
Q  444 gtgtccttctttccgttctttttatttcattaaagtttgaaaattatgaacaatg 498  Q
    |||||| |||||||| ||||||| || | ||||||||||||||||||||||||||    
T  23653689 gtgtccgtctttccgctcttttt-ttgcgttaaagtttgaaaattatgaacaatg 23653636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 420 - 498
Target Start/End: Original strand, 36609636 - 36609714
Alignment:
Q  420 actagcgaaaagacggacacgtgagtgtccttctttccgttctttttatttcattaaagtttgaaaattatgaacaatg 498  Q
    |||||||||||||||||||| |  ||| || |||||||   ||||||||| | |||| |||||||||| ||||||||||    
T  36609636 actagcgaaaagacggacacttacgtgcccgtctttcccccctttttattacgttaacgtttgaaaatcatgaacaatg 36609714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Original strand, 581657 - 581686
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  581657 atgaaattttgattttgattaaaactaaaa 581686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Original strand, 581932 - 581961
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  581932 atgaaattttgattttgattaaaactaaaa 581961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Original strand, 2275070 - 2275099
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  2275070 atgaaattttgattttgattaaaactaaaa 2275099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 494
Target Start/End: Complemental strand, 4550560 - 4550511
Alignment:
Q  445 tgtccttctttccgttctttttatttcattaaagtttgaaaattatgaac 494  Q
    ||||| |||||||| |||||||||| | |||| |||||||||||||||||    
T  4550560 tgtccgtctttccgctctttttattgccttaacgtttgaaaattatgaac 4550511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Original strand, 6474654 - 6474683
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  6474654 atgaaattttgattttgattaaaactaaaa 6474683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Complemental strand, 8790989 - 8790960
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  8790989 atgaaattttgattttgattaaaactaaaa 8790960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Complemental strand, 9334890 - 9334861
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  9334890 atgaaattttgattttgattaaaactaaaa 9334861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 565 - 606
Target Start/End: Complemental strand, 12383210 - 12383169
Alignment:
Q  565 gcacaaggtgtgccttagagactactacaggaaccaagagtt 606  Q
    |||||||||||||||| || |||||| |||||||||||||||    
T  12383210 gcacaaggtgtgccttggaaactactgcaggaaccaagagtt 12383169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Complemental strand, 19371913 - 19371884
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  19371913 atgaaattttgattttgattaaaactaaaa 19371884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Complemental strand, 21634845 - 21634816
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  21634845 atgaaattttgattttgattaaaactaaaa 21634816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Original strand, 21763315 - 21763344
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  21763315 atgaaattttgattttgattaaaactaaaa 21763344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Original strand, 27240900 - 27240929
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  27240900 atgaaattttgattttgattaaaactaaaa 27240929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Original strand, 30240719 - 30240748
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  30240719 atgaaattttgattttgattaaaactaaaa 30240748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 565 - 606
Target Start/End: Original strand, 30385707 - 30385748
Alignment:
Q  565 gcacaaggtgtgccttagagactactacaggaaccaagagtt 606  Q
    |||||||||||||||||||||||||  ||| |||||||||||    
T  30385707 gcacaaggtgtgccttagagactacatcagaaaccaagagtt 30385748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Complemental strand, 33429006 - 33428977
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  33429006 atgaaattttgattttgattaaaactaaaa 33428977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Original strand, 36609724 - 36609753
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  36609724 atgaaattttgattttgattaaaactaaaa 36609753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Original strand, 38598431 - 38598460
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  38598431 atgaaattttgattttgattaaaactaaaa 38598460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Complemental strand, 47901920 - 47901891
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  47901920 atgaaattttgattttgattaaaactaaaa 47901891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Original strand, 48103566 - 48103595
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  48103566 atgaaattttgattttgattaaaactaaaa 48103595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 514 - 542
Target Start/End: Original strand, 7774890 - 7774918
Alignment:
Q  514 atgaaattttgattttgattaaaactaaa 542  Q
    |||||||||||||||||||||||||||||    
T  7774890 atgaaattttgattttgattaaaactaaa 7774918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 3e-25; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 543 - 606
Target Start/End: Original strand, 45421003 - 45421066
Alignment:
Q  543 atataacaaagcagtccctagagcacaaggtgtgccttagagactactacaggaaccaagagtt 606  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  45421003 atataacaaagcagtccctaaagcacaaggtgtgccttagagactactacaggaaccaagagtt 45421066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 547 - 606
Target Start/End: Complemental strand, 31086287 - 31086228
Alignment:
Q  547 aacaaagcagtccctagagcacaaggtgtgccttagagactactacaggaaccaagagtt 606  Q
    |||| ||||||||| | |||||||||||| |||||||||||||| ||| |||||||||||    
T  31086287 aacagagcagtcccaaaagcacaaggtgtaccttagagactacttcagaaaccaagagtt 31086228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 552 - 606
Target Start/End: Original strand, 32145397 - 32145451
Alignment:
Q  552 agcagtccctagagcacaaggtgtgccttagagactactacaggaaccaagagtt 606  Q
    ||||||||| | |||||||||||||||||||| |||||| ||| || ||||||||    
T  32145397 agcagtcccgaaagcacaaggtgtgccttagaaactactgcagaaatcaagagtt 32145451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 548
Target Start/End: Original strand, 7929447 - 7929476
Alignment:
Q  519 attttgattttgattaaaactaaaatataa 548  Q
    ||||||||||||||||||||||||||||||    
T  7929447 attttgattttgattaaaactaaaatataa 7929476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Original strand, 9245092 - 9245121
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  9245092 atgaaattttgattttgattaaaactaaaa 9245121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Complemental strand, 13450338 - 13450309
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  13450338 atgaaattttgattttgattaaaactaaaa 13450309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Complemental strand, 14371578 - 14371549
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  14371578 atgaaattttgattttgattaaaactaaaa 14371549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Complemental strand, 33313160 - 33313131
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  33313160 atgaaattttgattttgattaaaactaaaa 33313131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Complemental strand, 34063413 - 34063384
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  34063413 atgaaattttgattttgattaaaactaaaa 34063384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Original strand, 34576292 - 34576321
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  34576292 atgaaattttgattttgattaaaactaaaa 34576321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Original strand, 39997365 - 39997394
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  39997365 atgaaattttgattttgattaaaactaaaa 39997394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 422 - 494
Target Start/End: Original strand, 8062604 - 8062675
Alignment:
Q  422 tagcgaaaagacggacacgtgagtgtccttctttccgttctttttatttcattaaagtttgaaaattatgaac 494  Q
    |||||||||||||  ||| |||||||| | ||||||| | |||||||| |||||| |||| ||||||||||||    
T  8062604 tagcgaaaagacgagcacatgagtgtcgt-ctttccgctatttttattgcattaacgtttcaaaattatgaac 8062675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 544 - 606
Target Start/End: Complemental strand, 17921663 - 17921601
Alignment:
Q  544 tataacaaagcagtccctagagcacaaggtgtgccttagagactactacaggaaccaagagtt 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  17921663 tataacaaagcagtccctagagcacaaggtgtgccttagagactactacagaaaccaagagtt 17921601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 543 - 606
Target Start/End: Original strand, 36305270 - 36305333
Alignment:
Q  543 atataacaaagcagtccctagagcacaaggtgtgccttagagactactacaggaaccaagagtt 606  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  36305270 atataacaaaacagtccctagagcacaaggtgtgccttagagactaccacaggaaccaagagtt 36305333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 543 - 606
Target Start/End: Original strand, 36928653 - 36928716
Alignment:
Q  543 atataacaaagcagtccctagagcacaaggtgtgccttagagactactacaggaaccaagagtt 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  36928653 atataacaaagcagtccctagagcacaaggtgtgccttagagactaccataggaaccaagagtt 36928716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 543 - 606
Target Start/End: Original strand, 4644500 - 4644563
Alignment:
Q  543 atataacaaagcagtccctagagcacaaggtgtgccttagagactactacaggaaccaagagtt 606  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||| ||| ||||||||||||    
T  4644500 atataacaatgcagtccctagagcacaaggtgtgccatagagactacaacaagaaccaagagtt 4644563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 543 - 606
Target Start/End: Complemental strand, 25640118 - 25640055
Alignment:
Q  543 atataacaaagcagtccctagagcacaaggtgtgccttagagactactacaggaaccaagagtt 606  Q
    |||||| ||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||    
T  25640118 atataataaagcagtctctagagcacaaggtctgctttagagactactacaggaaccaagagtt 25640055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 543 - 606
Target Start/End: Complemental strand, 9528406 - 9528342
Alignment:
Q  543 atataacaaagcagtccctagagcacaaggtgtgccttagagactac-tacaggaaccaagagtt 606  Q
    ||||||||| ||||||||||||||| |||||||||| ||||||||||  ||||||||||||||||    
T  9528406 atataacaatgcagtccctagagcataaggtgtgccatagagactacaaacaggaaccaagagtt 9528342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 543 - 606
Target Start/End: Original strand, 21527648 - 21527712
Alignment:
Q  543 atataacaaagcagtccctagagcacaaggtgtgccttagagactac-tacaggaaccaagagtt 606  Q
    ||||||||  |||||||||||||||||||||||||| ||||||||||  ||||||||||||||||    
T  21527648 atataacagtgcagtccctagagcacaaggtgtgccatagagactacaaacaggaaccaagagtt 21527712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 543 - 606
Target Start/End: Complemental strand, 14366277 - 14366213
Alignment:
Q  543 atataacaaagcagtccctagagcacaaggtgtgccttagagactac-tacaggaaccaagagtt 606  Q
    ||||||||| ||| |||||||||||||||||||||| |||||||| |  ||||||||||||||||    
T  14366277 atataacaatgcaatccctagagcacaaggtgtgccatagagactgcaaacaggaaccaagagtt 14366213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 543 - 606
Target Start/End: Original strand, 52336150 - 52336213
Alignment:
Q  543 atataacaaagcagtccctagagcacaaggtgtgccttagagactactacaggaaccaagagtt 606  Q
    ||||||||| |||||| ||||||||||| ||||||| |||||| ||| |||||| |||||||||    
T  52336150 atataacaatgcagtctctagagcacaatgtgtgccatagagattacaacaggagccaagagtt 52336213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 420 - 490
Target Start/End: Original strand, 1580999 - 1581069
Alignment:
Q  420 actagcgaaaagacggacacgtgagtgtccttctttccgttctttttatttcattaaagtttgaaaattat 490  Q
    ||||||||||||||||||||    |||||| |||||||| |||||||||| |  |||||||||||||||||    
T  1580999 actagcgaaaagacggacactcaggtgtccgtctttccgctctttttattgcgctaaagtttgaaaattat 1581069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 445 - 494
Target Start/End: Complemental strand, 46880266 - 46880217
Alignment:
Q  445 tgtccttctttccgttctttttatttcattaaagtttgaaaattatgaac 494  Q
    ||||| |||||||| |||||||||| |||||| |||||||||||||||||    
T  46880266 tgtccgtctttccgctctttttattgcattaacgtttgaaaattatgaac 46880217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 561 - 606
Target Start/End: Original strand, 47115793 - 47115838
Alignment:
Q  561 tagagcacaaggtgtgccttagagactactacaggaaccaagagtt 606  Q
    |||||||||||||||| |||||||||||| |||| |||||||||||    
T  47115793 tagagcacaaggtgtgtcttagagactacaacagaaaccaagagtt 47115838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 543 - 606
Target Start/End: Complemental strand, 48266371 - 48266307
Alignment:
Q  543 atataacaaagcagtccctagagcacaaggtgtgccttagagactac-tacaggaaccaagagtt 606  Q
    ||||||||| ||| | |||||||||||| ||||||| ||||||||||  ||||||||||||||||    
T  48266371 atataacaatgcaattcctagagcacaatgtgtgccatagagactacaaacaggaaccaagagtt 48266307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 547 - 606
Target Start/End: Complemental strand, 28053950 - 28053891
Alignment:
Q  547 aacaaagcagtccctagagcacaaggtgtgccttagagactactacaggaaccaagagtt 606  Q
    |||| ||||||||| | |||||||||||| |||||||||||||| ||| || ||||||||    
T  28053950 aacagagcagtcccaaaagcacaaggtgtaccttagagactactgcagaaatcaagagtt 28053891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 513 - 543
Target Start/End: Complemental strand, 8574204 - 8574174
Alignment:
Q  513 aatgaaattttgattttgattaaaactaaaa 543  Q
    |||||||||||||||||||||||||||||||    
T  8574204 aatgaaattttgattttgattaaaactaaaa 8574174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 514 - 544
Target Start/End: Complemental strand, 8699462 - 8699432
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaat 544  Q
    |||||||||||||||||||||||||||||||    
T  8699462 atgaaattttgattttgattaaaactaaaat 8699432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 439 - 493
Target Start/End: Complemental strand, 11409236 - 11409182
Alignment:
Q  439 cgtgagtgtccttctttccgttctttttatttcattaaagtttgaaaattatgaa 493  Q
    ||||||||||  |||||||| |||||||||| |  ||||||||||||||||||||    
T  11409236 cgtgagtgtctgtctttccgctctttttattgcgataaagtttgaaaattatgaa 11409182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 444 - 494
Target Start/End: Complemental strand, 44668015 - 44667965
Alignment:
Q  444 gtgtccttctttccgttctttttatttcattaaagtttgaaaattatgaac 494  Q
    |||||| ||||||||||||||||||| || ||| |||| ||||||||||||    
T  44668015 gtgtccgtctttccgttctttttattgcactaacgtttaaaaattatgaac 44667965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Complemental strand, 5935738 - 5935709
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  5935738 atgaaattttgattttgattaaaactaaaa 5935709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Original strand, 7491180 - 7491209
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  7491180 atgaaattttgattttgattaaaactaaaa 7491209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Complemental strand, 9390145 - 9390116
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  9390145 atgaaattttgattttgattaaaactaaaa 9390116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Original strand, 15790342 - 15790371
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  15790342 atgaaattttgattttgattaaaactaaaa 15790371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Complemental strand, 23929204 - 23929175
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  23929204 atgaaattttgattttgattaaaactaaaa 23929175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Complemental strand, 28041609 - 28041580
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  28041609 atgaaattttgattttgattaaaactaaaa 28041580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Original strand, 31526406 - 31526435
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  31526406 atgaaattttgattttgattaaaactaaaa 31526435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Complemental strand, 32305743 - 32305714
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  32305743 atgaaattttgattttgattaaaactaaaa 32305714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Complemental strand, 33194079 - 33194050
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  33194079 atgaaattttgattttgattaaaactaaaa 33194050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 493
Target Start/End: Complemental strand, 33194142 - 33194093
Alignment:
Q  444 gtgtccttctttccgttctttttatttcattaaagtttgaaaattatgaa 493  Q
    ||||||||||||||| |||||||||| | |||| |||| |||||||||||    
T  33194142 gtgtccttctttccgctctttttattgcgttaacgtttaaaaattatgaa 33194093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Complemental strand, 39728411 - 39728382
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  39728411 atgaaattttgattttgattaaaactaaaa 39728382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Complemental strand, 41187894 - 41187865
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  41187894 atgaaattttgattttgattaaaactaaaa 41187865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Original strand, 43577374 - 43577403
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  43577374 atgaaattttgattttgattaaaactaaaa 43577403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Complemental strand, 44667921 - 44667892
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  44667921 atgaaattttgattttgattaaaactaaaa 44667892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Complemental strand, 45943480 - 45943451
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  45943480 atgaaattttgattttgattaaaactaaaa 45943451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Original strand, 46273386 - 46273415
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  46273386 atgaaattttgattttgattaaaactaaaa 46273415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Original strand, 50944516 - 50944545
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  50944516 atgaaattttgattttgattaaaactaaaa 50944545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Complemental strand, 51184824 - 51184795
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  51184824 atgaaattttgattttgattaaaactaaaa 51184795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 514 - 542
Target Start/End: Complemental strand, 11345124 - 11345096
Alignment:
Q  514 atgaaattttgattttgattaaaactaaa 542  Q
    |||||||||||||||||||||||||||||    
T  11345124 atgaaattttgattttgattaaaactaaa 11345096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 543
Target Start/End: Original strand, 43723762 - 43723790
Alignment:
Q  515 tgaaattttgattttgattaaaactaaaa 543  Q
    |||||||||||||||||||||||||||||    
T  43723762 tgaaattttgattttgattaaaactaaaa 43723790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 7e-23; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 543 - 598
Target Start/End: Complemental strand, 38542869 - 38542814
Alignment:
Q  543 atataacaaagcagtccctagagcacaaggtgtgccttagagactactacaggaac 598  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38542869 atataacaaagcagtccctagagcacaaggtgtgccttagagactactacaggaac 38542814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 543 - 606
Target Start/End: Complemental strand, 30168000 - 30167937
Alignment:
Q  543 atataacaaagcagtccctagagcacaaggtgtgccttagagactactacaggaaccaagagtt 606  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||    
T  30168000 atataacaaagcagtccctaaagcacaaggtgtgccttagaaactactacacgaaccaagagtt 30167937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 543 - 606
Target Start/End: Original strand, 32004468 - 32004531
Alignment:
Q  543 atataacaaagcagtccctagagcacaaggtgtgccttagagactactacaggaaccaagagtt 606  Q
    ||||||||| |||||||||||||||||| ||||||| |||||||||| ||||||||||||||||    
T  32004468 atataacaatgcagtccctagagcacaacgtgtgccatagagactacaacaggaaccaagagtt 32004531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 543 - 606
Target Start/End: Original strand, 13447967 - 13448030
Alignment:
Q  543 atataacaaagcagtccctagagcacaaggtgtgccttagagactactacaggaaccaagagtt 606  Q
    ||||| ||| |||||||||| ||||||||||||||| ||||||||||  |||||||||||||||    
T  13447967 atataccaatgcagtccctaaagcacaaggtgtgccatagagactacagcaggaaccaagagtt 13448030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 411 - 467
Target Start/End: Original strand, 3266719 - 3266775
Alignment:
Q  411 attatattgactagcgaaaagacggacacgtgagtgtccttctttccgttcttttta 467  Q
    |||||||  |||||||||||||||| |||||||||| || |||||||||||||||||    
T  3266719 attatatatactagcgaaaagacgggcacgtgagtgcccgtctttccgttcttttta 3266775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 514 - 548
Target Start/End: Complemental strand, 36717085 - 36717051
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaatataa 548  Q
    |||||||||||||||||||||||||||||||||||    
T  36717085 atgaaattttgattttgattaaaactaaaatataa 36717051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 268 - 313
Target Start/End: Complemental strand, 18385903 - 18385858
Alignment:
Q  268 ttttcatctaataaaagagtgaatgtttgaaataaatgagcattag 313  Q
    ||||||| |||||||| |||||||||||||||||||| ||||||||    
T  18385903 ttttcatataataaaatagtgaatgtttgaaataaataagcattag 18385858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 48 - 139
Target Start/End: Complemental strand, 18386135 - 18386040
Alignment:
Q  48 tattatatacaaataatcttatc--cttgttatgtgtctccaaatgaggt--ctatgattcaatctttgctactaacattttcctcctcctctcta 139  Q
    |||||||||||||||||||||||  | |  || | |||||||||  ||||  ||||| |||||||||||||||| ||||||||||| |||||||||    
T  18386135 tattatatacaaataatcttatctccatagtacgggtctccaaagaaggtatctatggttcaatctttgctacttacattttcctcgtcctctcta 18386040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 514 - 544
Target Start/End: Original strand, 3266820 - 3266850
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaat 544  Q
    |||||||||||||||||||||||||||||||    
T  3266820 atgaaattttgattttgattaaaactaaaat 3266850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 513 - 543
Target Start/End: Original strand, 26224020 - 26224050
Alignment:
Q  513 aatgaaattttgattttgattaaaactaaaa 543  Q
    |||||||||||||||||||||||||||||||    
T  26224020 aatgaaattttgattttgattaaaactaaaa 26224050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 514 - 548
Target Start/End: Original strand, 38809195 - 38809229
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaatataa 548  Q
    |||||||||||||||||||||||||||| ||||||    
T  38809195 atgaaattttgattttgattaaaactaatatataa 38809229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Complemental strand, 5530798 - 5530769
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  5530798 atgaaattttgattttgattaaaactaaaa 5530769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 569 - 606
Target Start/End: Original strand, 7146553 - 7146590
Alignment:
Q  569 aaggtgtgccttagagactactacaggaaccaagagtt 606  Q
    ||||||||||||||||||||| |||| |||||||||||    
T  7146553 aaggtgtgccttagagactaccacagaaaccaagagtt 7146590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Original strand, 7252177 - 7252206
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  7252177 atgaaattttgattttgattaaaactaaaa 7252206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Original strand, 8149426 - 8149455
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  8149426 atgaaattttgattttgattaaaactaaaa 8149455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Original strand, 19420026 - 19420055
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  19420026 atgaaattttgattttgattaaaactaaaa 19420055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Original strand, 19579185 - 19579214
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  19579185 atgaaattttgattttgattaaaactaaaa 19579214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Original strand, 19592012 - 19592041
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  19592012 atgaaattttgattttgattaaaactaaaa 19592041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Complemental strand, 21078827 - 21078798
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  21078827 atgaaattttgattttgattaaaactaaaa 21078798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 565 - 606
Target Start/End: Original strand, 23601280 - 23601321
Alignment:
Q  565 gcacaaggtgtgccttagagactactacaggaaccaagagtt 606  Q
    |||||||||||||||||||||||||  ||| |||||||||||    
T  23601280 gcacaaggtgtgccttagagactacctcagaaaccaagagtt 23601321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Complemental strand, 28370566 - 28370537
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  28370566 atgaaattttgattttgattaaaactaaaa 28370537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Complemental strand, 28378388 - 28378359
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  28378388 atgaaattttgattttgattaaaactaaaa 28378359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Complemental strand, 28386206 - 28386177
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  28386206 atgaaattttgattttgattaaaactaaaa 28386177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Complemental strand, 35380047 - 35380018
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  35380047 atgaaattttgattttgattaaaactaaaa 35380018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Original strand, 39903810 - 39903839
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  39903810 atgaaattttgattttgattaaaactaaaa 39903839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Complemental strand, 40360479 - 40360450
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  40360479 atgaaattttgattttgattaaaactaaaa 40360450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Complemental strand, 41817375 - 41817346
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  41817375 atgaaattttgattttgattaaaactaaaa 41817346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Complemental strand, 45644310 - 45644281
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  45644310 atgaaattttgattttgattaaaactaaaa 45644281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Original strand, 46731778 - 46731807
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  46731778 atgaaattttgattttgattaaaactaaaa 46731807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Complemental strand, 50099197 - 50099168
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  50099197 atgaaattttgattttgattaaaactaaaa 50099168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 470
Target Start/End: Complemental strand, 15522728 - 15522676
Alignment:
Q  418 tgactagcgaaaagacggacacgtgagtgtccttctttccgttctttttattt 470  Q
    ||||||||| ||||| |||||| |  |||||| ||||||||||||||||||||    
T  15522728 tgactagcggaaagatggacacttacgtgtccgtctttccgttctttttattt 15522676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 421 - 493
Target Start/End: Original strand, 21091777 - 21091849
Alignment:
Q  421 ctagcgaaaagacggacacgtgagtgtccttctttccgttctttttatttcattaaagtttgaaaattatgaa 493  Q
    |||||||||||| ||||||    |||||| |||||||  |||||||||| || ||| ||||||||||||||||    
T  21091777 ctagcgaaaagatggacactcacgtgtccgtctttcctctctttttattgcactaacgtttgaaaattatgaa 21091849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 451 - 491
Target Start/End: Complemental strand, 22526282 - 22526242
Alignment:
Q  451 tctttccgttctttttatttcattaaagtttgaaaattatg 491  Q
    ||||| || ||||||||||||||||| ||||||||||||||    
T  22526282 tcttttcgctctttttatttcattaatgtttgaaaattatg 22526242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 543 - 606
Target Start/End: Original strand, 7160 - 7223
Alignment:
Q  543 atataacaaagcagtccctagagcacaaggtgtgccttagagactactacaggaaccaagagtt 606  Q
    ||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  7160 atataacaaagcaatccctaaagcataaggtgtgccttagagactactacaggaaccaagagtt 7223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 543 - 606
Target Start/End: Original strand, 7451838 - 7451901
Alignment:
Q  543 atataacaaagcagtccctagagcacaaggtgtgccttagagactactacaggaaccaagagtt 606  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||    
T  7451838 atataacaaagcagtccctagagcacaagctgtgccttagagactaccataggaaccaagagtt 7451901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 543 - 606
Target Start/End: Complemental strand, 12531230 - 12531167
Alignment:
Q  543 atataacaaagcagtccctagagcacaaggtgtgccttagagactactacaggaaccaagagtt 606  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||    
T  12531230 atataacaaagcagtccctagagcataaggtgtgccttagaaactattacaggaaccaagagtt 12531167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 543 - 606
Target Start/End: Complemental strand, 12220787 - 12220724
Alignment:
Q  543 atataacaaagcagtccctagagcacaaggtgtgccttagagactactacaggaaccaagagtt 606  Q
    |||||||||| || ||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  12220787 atataacaaaacaatccctagagcacaaggtgtgccttagagactaccacaggaatcaagagtt 12220724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 543 - 606
Target Start/End: Complemental strand, 19385362 - 19385299
Alignment:
Q  543 atataacaaagcagtccctagagcacaaggtgtgccttagagactactacaggaaccaagagtt 606  Q
    |||||||||  ||||||||| |||| |||||||||| |||||||||| | ||||||||||||||    
T  19385362 atataacaatacagtccctaaagcataaggtgtgccatagagactacaataggaaccaagagtt 19385299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 513 - 543
Target Start/End: Original strand, 1759527 - 1759557
Alignment:
Q  513 aatgaaattttgattttgattaaaactaaaa 543  Q
    |||||||||||||||||||||||||||||||    
T  1759527 aatgaaattttgattttgattaaaactaaaa 1759557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 444 - 498
Target Start/End: Complemental strand, 12838821 - 12838767
Alignment:
Q  444 gtgtccttctttccgttctttttatttcattaaagtttgaaaattatgaacaatg 498  Q
    |||||| |||||||  |||||||||| | |||| |||||||||||||||||||||    
T  12838821 gtgtccgtctttcctctctttttattgcgttaatgtttgaaaattatgaacaatg 12838767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 513 - 543
Target Start/End: Complemental strand, 13150134 - 13150104
Alignment:
Q  513 aatgaaattttgattttgattaaaactaaaa 543  Q
    |||||||||||||||||||||||||||||||    
T  13150134 aatgaaattttgattttgattaaaactaaaa 13150104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 451 - 493
Target Start/End: Original strand, 32856441 - 32856483
Alignment:
Q  451 tctttccgttctttttatttcattaaagtttgaaaattatgaa 493  Q
    |||||||||||||||||||||  ||| ||||||||||||||||    
T  32856441 tctttccgttctttttatttcgctaatgtttgaaaattatgaa 32856483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 420 - 494
Target Start/End: Complemental strand, 42862838 - 42862764
Alignment:
Q  420 actagcgaaaagacggacacgtgagtgtccttctttccgttctttttatttcattaaagtttgaaaattatgaac 494  Q
    |||||| ||||||||| ||||| |||| || | |||| ||| |||||||| | |||| |||||||||||||||||    
T  42862838 actagcaaaaagacgggcacgtaagtgcccgtatttctgttttttttattccgttaacgtttgaaaattatgaac 42862764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Complemental strand, 1554956 - 1554927
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  1554956 atgaaattttgattttgattaaaactaaaa 1554927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Complemental strand, 3825383 - 3825354
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  3825383 atgaaattttgattttgattaaaactaaaa 3825354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Original strand, 4414943 - 4414972
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  4414943 atgaaattttgattttgattaaaactaaaa 4414972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Original strand, 5626031 - 5626060
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  5626031 atgaaattttgattttgattaaaactaaaa 5626060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Original strand, 10865089 - 10865118
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  10865089 atgaaattttgattttgattaaaactaaaa 10865118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Original strand, 21307037 - 21307066
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  21307037 atgaaattttgattttgattaaaactaaaa 21307066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Complemental strand, 28205619 - 28205590
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  28205619 atgaaattttgattttgattaaaactaaaa 28205590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Original strand, 30264104 - 30264133
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  30264104 atgaaattttgattttgattaaaactaaaa 30264133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Original strand, 30800485 - 30800514
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  30800485 atgaaattttgattttgattaaaactaaaa 30800514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Complemental strand, 34968150 - 34968121
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  34968150 atgaaattttgattttgattaaaactaaaa 34968121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 543 - 606
Target Start/End: Complemental strand, 7663893 - 7663830
Alignment:
Q  543 atataacaaagcagtccctagagcacaaggtgtgccttagagactactacaggaaccaagagtt 606  Q
    ||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  7663893 atataacaaagcaatccctaaagcataaggtgtgccttagagactactacaggaaccaagagtt 7663830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 543 - 594
Target Start/End: Complemental strand, 1121631 - 1121580
Alignment:
Q  543 atataacaaagcagtccctagagcacaaggtgtgccttagagactactacag 594  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||| ||||    
T  1121631 atataacaaagcagtccctagagcataaggtgtgccttagaaactaccacag 1121580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 543 - 606
Target Start/End: Complemental strand, 3130631 - 3130568
Alignment:
Q  543 atataacaaagcagtccctagagcacaaggtgtgccttagagactactacaggaaccaagagtt 606  Q
    ||||||||| ||||| |||| || |||||||||||| |||||||||| ||||||||||||||||    
T  3130631 atataacaatgcagttcctaaagtacaaggtgtgccgtagagactacaacaggaaccaagagtt 3130568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 420 - 494
Target Start/End: Complemental strand, 6196902 - 6196828
Alignment:
Q  420 actagcgaaaagacggacacgtgagtgtccttctttccgttctttttatttcattaaagtttgaaaattatgaac 494  Q
    |||||||||||||||||||||||| || || |||||| | ||||||| || ||||||  ||||||||||||||||    
T  6196902 actagcgaaaagacggacacgtgaatgcccgtctttctgctctttttcttgcattaacatttgaaaattatgaac 6196828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 543 - 603
Target Start/End: Complemental strand, 5817834 - 5817773
Alignment:
Q  543 atataacaaagcagtccctagagcacaaggtgtgccttagagactac-tacaggaaccaaga 603  Q
    ||||||||| ||||||||||||||||| |||||||| ||||||||||  |||||||||||||    
T  5817834 atataacaatgcagtccctagagcacagggtgtgccatagagactacaaacaggaaccaaga 5817773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 543 - 606
Target Start/End: Complemental strand, 8655726 - 8655662
Alignment:
Q  543 atataacaaagcagtccctagagcacaaggtgtgccttagagactac-tacaggaaccaagagtt 606  Q
    ||||||||| |||| || |||||||||||||||||| ||||||||||  ||||||||||||||||    
T  8655726 atataacaatgcagcccgtagagcacaaggtgtgccatagagactacaaacaggaaccaagagtt 8655662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 423 - 498
Target Start/End: Original strand, 26878416 - 26878491
Alignment:
Q  423 agcgaaaagacggacacgtgagtgtccttctttccgttctttttatttcattaaagtttgaaaattatgaacaatg 498  Q
    |||||| |||||| ||||||||||||| |||||| | | |||||||| | |||| |||||||||||||||| ||||    
T  26878416 agcgaacagacgggcacgtgagtgtccgtctttctgctatttttattgcgttaacgtttgaaaattatgaataatg 26878491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 420 - 495
Target Start/End: Complemental strand, 31139207 - 31139132
Alignment:
Q  420 actagcgaaaagacggacacgtgagtgtccttctttccgttctttttatttcattaaagtttgaaaattatgaaca 495  Q
    ||||| |||||||||| |||  |||||| | |||||||| |||||||||| || |||||||| |||||||||||||    
T  31139207 actagtgaaaagacgggcactcgagtgttcgtctttccgctctttttattgcactaaagtttaaaaattatgaaca 31139132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 492
Target Start/End: Original strand, 2290849 - 2290921
Alignment:
Q  420 actagcgaaaagacggacacgtgagtgtccttctttccgttctttttatttcattaaagtttgaaaattatga 492  Q
    ||||||||||||||||||||   |||| || ||||||| ||||||||||| |  ||| |||||||||||||||    
T  2290849 actagcgaaaagacggacactcaagtgcccatctttcctttctttttattgcgctaatgtttgaaaattatga 2290921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 543 - 606
Target Start/End: Original strand, 47540413 - 47540476
Alignment:
Q  543 atataacaaagcagtccctagagcacaaggtgtgccttagagactactacaggaaccaagagtt 606  Q
    ||||||||| ||||||||||  |||||| ||||||  |||| ||||| ||||||||||||||||    
T  47540413 atataacaatgcagtccctaacgcacaaagtgtgctatagatactacaacaggaaccaagagtt 47540476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 514 - 548
Target Start/End: Original strand, 21053986 - 21054020
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaatataa 548  Q
    |||||||||||||||||||||||| ||||||||||    
T  21053986 atgaaattttgattttgattaaaattaaaatataa 21054020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 513 - 543
Target Start/End: Original strand, 38364741 - 38364771
Alignment:
Q  513 aatgaaattttgattttgattaaaactaaaa 543  Q
    |||||||||||||||||||||||||||||||    
T  38364741 aatgaaattttgattttgattaaaactaaaa 38364771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 513 - 543
Target Start/End: Complemental strand, 41169356 - 41169326
Alignment:
Q  513 aatgaaattttgattttgattaaaactaaaa 543  Q
    |||||||||||||||||||||||||||||||    
T  41169356 aatgaaattttgattttgattaaaactaaaa 41169326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 423 - 469
Target Start/End: Complemental strand, 51610375 - 51610329
Alignment:
Q  423 agcgaaaagacggacacgtgagtgtccttctttccgttctttttatt 469  Q
    ||||||||||||||||| | ||||||| |||||||| ||||||||||    
T  51610375 agcgaaaagacggacacataagtgtccgtctttccgctctttttatt 51610329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 513 - 543
Target Start/End: Original strand, 55117802 - 55117832
Alignment:
Q  513 aatgaaattttgattttgattaaaactaaaa 543  Q
    |||||||||||||||||||||||||||||||    
T  55117802 aatgaaattttgattttgattaaaactaaaa 55117832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Complemental strand, 549186 - 549157
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  549186 atgaaattttgattttgattaaaactaaaa 549157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 494
Target Start/End: Complemental strand, 669881 - 669832
Alignment:
Q  445 tgtccttctttccgttctttttatttcattaaagtttgaaaattatgaac 494  Q
    ||||| |||||||| |||||||||| || ||| |||||||||||||||||    
T  669881 tgtccatctttccgctctttttattgcactaacgtttgaaaattatgaac 669832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Original strand, 4958780 - 4958809
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  4958780 atgaaattttgattttgattaaaactaaaa 4958809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Complemental strand, 5662292 - 5662263
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  5662292 atgaaattttgattttgattaaaactaaaa 5662263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Complemental strand, 7712783 - 7712754
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  7712783 atgaaattttgattttgattaaaactaaaa 7712754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 565 - 606
Target Start/End: Complemental strand, 12776841 - 12776800
Alignment:
Q  565 gcacaaggtgtgccttagagactactacaggaaccaagagtt 606  Q
    ||||||||||||||| |||||||||  |||||||||||||||    
T  12776841 gcacaaggtgtgcctaagagactacctcaggaaccaagagtt 12776800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Complemental strand, 13781663 - 13781634
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  13781663 atgaaattttgattttgattaaaactaaaa 13781634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 565 - 606
Target Start/End: Original strand, 20673216 - 20673257
Alignment:
Q  565 gcacaaggtgtgccttagagactactacaggaaccaagagtt 606  Q
    ||||||||||||||| |||||||||  |||||||||||||||    
T  20673216 gcacaaggtgtgcctaagagactacctcaggaaccaagagtt 20673257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 494
Target Start/End: Complemental strand, 21796534 - 21796493
Alignment:
Q  453 tttccgttctttttatttcattaaagtttgaaaattatgaac 494  Q
    |||||| ||||||||||  |||||||||||||||||||||||    
T  21796534 tttccgctctttttattatattaaagtttgaaaattatgaac 21796493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Original strand, 23091197 - 23091226
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  23091197 atgaaattttgattttgattaaaactaaaa 23091226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Original strand, 26878502 - 26878531
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  26878502 atgaaattttgattttgattaaaactaaaa 26878531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Original strand, 37143199 - 37143228
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  37143199 atgaaattttgattttgattaaaactaaaa 37143228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Complemental strand, 44470420 - 44470391
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  44470420 atgaaattttgattttgattaaaactaaaa 44470391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 492
Target Start/End: Original strand, 46224346 - 46224387
Alignment:
Q  451 tctttccgttctttttatttcattaaagtttgaaaattatga 492  Q
    ||||||||||||||||| | |||||| |||||||||||||||    
T  46224346 tctttccgttctttttactgcattaacgtttgaaaattatga 46224387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 543
Target Start/End: Complemental strand, 34659425 - 34659397
Alignment:
Q  515 tgaaattttgattttgattaaaactaaaa 543  Q
    |||||||||||||||||||||||||||||    
T  34659425 tgaaattttgattttgattaaaactaaaa 34659397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 420 - 494
Target Start/End: Original strand, 38455269 - 38455343
Alignment:
Q  420 actagcgaaaagacggacacgtgagtgtccttctttccgttctttttatttcattaaagtttgaaaattatgaac 494  Q
    ||||| |||||||||||||||| ||||||| |||||||| |||||||||| || |||  ||||||||||||||||    
T  38455269 actagggaaaagacggacacgtaagtgtccatctttccgctctttttattgcactaacatttgaaaattatgaac 38455343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 410 - 498
Target Start/End: Complemental strand, 9524175 - 9524087
Alignment:
Q  410 aattatattgactagcgaaaagacggacacgtgagtgtccttctttccgttctttttatttcattaaagtttgaaaattatgaacaatg 498  Q
    |||||| || |||||||||||||||| |||||| ||| |  |||||||| |||||||||| |  ||| |||||||||||||||||||||    
T  9524175 aattattttcactagcgaaaagacgggcacgtgcgtgcctgtctttccgctctttttattgcgctaacgtttgaaaattatgaacaatg 9524087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 543 - 606
Target Start/End: Complemental strand, 10487559 - 10487495
Alignment:
Q  543 atataacaaagcagtccctagagcacaaggtgtgccttagagactac-tacaggaaccaagagtt 606  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||  ||| ||||||||||||    
T  10487559 atataacaatgcagtccctagagcacaaggtgtgccatagagactacacacatgaaccaagagtt 10487495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 420 - 489
Target Start/End: Complemental strand, 42208105 - 42208036
Alignment:
Q  420 actagcgaaaagacggacacgtgagtgtccttctttccgttctttttatttcattaaagtttgaaaatta 489  Q
    |||||||||||||||| |||  |||||||| ||||||| || |||||||| |  ||||||||||||||||    
T  42208105 actagcgaaaagacgggcactagagtgtccgtctttcctttttttttattgcgctaaagtttgaaaatta 42208036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 420 - 493
Target Start/End: Original strand, 833999 - 834070
Alignment:
Q  420 actagcgaaaagacggacacgtgagtgtccttctttccgttctttttatttcattaaagtttgaaaattatgaa 493  Q
    |||||||||||||||| ||||  |||| |  |||||||| |||||||||| | |||| ||||||||||||||||    
T  833999 actagcgaaaagacgggcacg--agtgcctgtctttccgctctttttattgcgttaacgtttgaaaattatgaa 834070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Complemental strand, 831874 - 831845
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  831874 atgaaattttgattttgattaaaactaaaa 831845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Complemental strand, 834631 - 834602
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  834631 atgaaattttgattttgattaaaactaaaa 834602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Original strand, 4326227 - 4326256
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  4326227 atgaaattttgattttgattaaaactaaaa 4326256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Original strand, 7938008 - 7938037
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  7938008 atgaaattttgattttgattaaaactaaaa 7938037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Complemental strand, 10721646 - 10721617
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  10721646 atgaaattttgattttgattaaaactaaaa 10721617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Original strand, 38445457 - 38445486
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  38445457 atgaaattttgattttgattaaaactaaaa 38445486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Complemental strand, 41613225 - 41613196
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  41613225 atgaaattttgattttgattaaaactaaaa 41613196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 543
Target Start/End: Complemental strand, 5026388 - 5026360
Alignment:
Q  515 tgaaattttgattttgattaaaactaaaa 543  Q
    |||||||||||||||||||||||||||||    
T  5026388 tgaaattttgattttgattaaaactaaaa 5026360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 517 - 545
Target Start/End: Complemental strand, 6062179 - 6062151
Alignment:
Q  517 aaattttgattttgattaaaactaaaata 545  Q
    |||||||||||||||||||||||||||||    
T  6062179 aaattttgattttgattaaaactaaaata 6062151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 514 - 542
Target Start/End: Complemental strand, 42097677 - 42097649
Alignment:
Q  514 atgaaattttgattttgattaaaactaaa 542  Q
    |||||||||||||||||||||||||||||    
T  42097677 atgaaattttgattttgattaaaactaaa 42097649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 543 - 606
Target Start/End: Original strand, 1682528 - 1682591
Alignment:
Q  543 atataacaaagcagtccctagagcacaaggtgtgccttagagactactacaggaaccaagagtt 606  Q
    |||| |||| ||||| |||| ||||||||||||||| |||||||||||||| ||||||||||||    
T  1682528 atatgacaatgcagtgcctaaagcacaaggtgtgccatagagactactacaagaaccaagagtt 1682591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 543 - 606
Target Start/End: Original strand, 33629586 - 33629649
Alignment:
Q  543 atataacaaagcagtccctagagcacaaggtgtgccttagagactactacaggaaccaagagtt 606  Q
    ||||||||| | |||||||| ||||||||||||||| |||||||||| ||| ||||||||||||    
T  33629586 atataacaatgtagtccctaaagcacaaggtgtgccatagagactacaacaagaaccaagagtt 33629649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 420 - 494
Target Start/End: Original strand, 19145962 - 19146036
Alignment:
Q  420 actagcgaaaagacggacacgtgagtgtccttctttccgttctttttatttcattaaagtttgaaaattatgaac 494  Q
    ||||||||||| |||| ||| |  |||||| |||||||| ||||||||||  ||||| |||||||||||||||||    
T  19145962 actagcgaaaacacgggcacttacgtgtccgtctttccgctctttttattgaattaatgtttgaaaattatgaac 19146036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 513 - 543
Target Start/End: Original strand, 10343283 - 10343313
Alignment:
Q  513 aatgaaattttgattttgattaaaactaaaa 543  Q
    |||||||||||||||||||||||||||||||    
T  10343283 aatgaaattttgattttgattaaaactaaaa 10343313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 451 - 497
Target Start/End: Original strand, 12169703 - 12169749
Alignment:
Q  451 tctttccgttctttttatttcattaaagtttgaaaattatgaacaat 497  Q
    |||||||| |||||||||| | |||| ||||||||||||||||||||    
T  12169703 tctttccgctctttttattgcgttaatgtttgaaaattatgaacaat 12169749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 514 - 548
Target Start/End: Complemental strand, 14965416 - 14965382
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaatataa 548  Q
    ||||||| |||||||||||||||||||||||||||    
T  14965416 atgaaatcttgattttgattaaaactaaaatataa 14965382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Original strand, 7451602 - 7451631
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  7451602 atgaaattttgattttgattaaaactaaaa 7451631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Complemental strand, 20716022 - 20715993
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  20716022 atgaaattttgattttgattaaaactaaaa 20715993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Original strand, 22838216 - 22838245
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  22838216 atgaaattttgattttgattaaaactaaaa 22838245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Complemental strand, 31862031 - 31862002
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  31862031 atgaaattttgattttgattaaaactaaaa 31862002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 543
Target Start/End: Original strand, 34905214 - 34905242
Alignment:
Q  515 tgaaattttgattttgattaaaactaaaa 543  Q
    |||||||||||||||||||||||||||||    
T  34905214 tgaaattttgattttgattaaaactaaaa 34905242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1246 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold1246
Description:

Target: scaffold1246; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 420 - 494
Target Start/End: Original strand, 2166 - 2240
Alignment:
Q  420 actagcgaaaagacggacacgtgagtgtccttctttccgttctttttatttcattaaagtttgaaaattatgaac 494  Q
    |||||| ||||||| |||| |||||||||| |||||||| ||||||||||   ||||| ||||||||||||||||    
T  2166 actagcaaaaagacagacatgtgagtgtccatctttccgctctttttattgtcttaaaatttgaaaattatgaac 2240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 543 - 606
Target Start/End: Complemental strand, 48610 - 48547
Alignment:
Q  543 atataacaaagcagtccctagagcacaaggtgtgccttagagactactacaggaaccaagagtt 606  Q
    ||||||||| ||||||| ||||||||||  ||||||||||| ||||| ||||||| ||||||||    
T  48610 atataacaatgcagtccttagagcacaatttgtgccttagaaactacaacaggaatcaagagtt 48547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 543 - 606
Target Start/End: Complemental strand, 22866 - 22802
Alignment:
Q  543 atataacaaagcagtccctagagcacaaggtgtgccttagagactac-tacaggaaccaagagtt 606  Q
    |||||||||  ||||||||||||||||||||||| | || |||||||  ||||||||||||||||    
T  22866 atataacaatacagtccctagagcacaaggtgtgtcatacagactacaaacaggaaccaagagtt 22802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 444 - 494
Target Start/End: Complemental strand, 21457 - 21407
Alignment:
Q  444 gtgtccttctttccgttctttttatttcattaaagtttgaaaattatgaac 494  Q
    |||||| |||||||| |||||||||| |  |||||||||||||||||||||    
T  21457 gtgtccgtctttccgctctttttattgcgctaaagtttgaaaattatgaac 21407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 543 - 589
Target Start/End: Complemental strand, 135289 - 135243
Alignment:
Q  543 atataacaaagcagtccctagagcacaaggtgtgccttagagactac 589  Q
    ||||||||| |||| ||||||||||||||| ||||| ||||||||||    
T  135289 atataacaatgcagcccctagagcacaaggcgtgccatagagactac 135243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 543 - 589
Target Start/End: Complemental strand, 313116 - 313070
Alignment:
Q  543 atataacaaagcagtccctagagcacaaggtgtgccttagagactac 589  Q
    ||||||||| |||| ||||||||||||||| ||||| ||||||||||    
T  313116 atataacaatgcagcccctagagcacaaggcgtgccatagagactac 313070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 543 - 589
Target Start/End: Complemental strand, 328570 - 328524
Alignment:
Q  543 atataacaaagcagtccctagagcacaaggtgtgccttagagactac 589  Q
    ||||||||| |||| ||||||||||||||| ||||| ||||||||||    
T  328570 atataacaatgcagcccctagagcacaaggcgtgccatagagactac 328524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 543
Target Start/End: Complemental strand, 227589 - 227560
Alignment:
Q  514 atgaaattttgattttgattaaaactaaaa 543  Q
    ||||||||||||||||||||||||||||||    
T  227589 atgaaattttgattttgattaaaactaaaa 227560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0583 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0583
Description:

Target: scaffold0583; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 442 - 494
Target Start/End: Original strand, 864 - 916
Alignment:
Q  442 gagtgtccttctttccgttctttttatttcattaaagtttgaaaattatgaac 494  Q
    |||||||| |||||||| |||||||| | | ||||| ||||||||||||||||    
T  864 gagtgtccgtctttccgctctttttactgcgttaaaatttgaaaattatgaac 916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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