View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4847-Insertion-9 (Length: 375)
Name: NF4847-Insertion-9
Description: NF4847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4847-Insertion-9 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 6e-87; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 7 - 257
Target Start/End: Original strand, 40581651 - 40581928
Alignment:
| Q |
7 |
aagcccatgacatgaaaggtggctccagcctccacaggatgatgatggaaaggataagataccggaattatatat------gcatgcatgggtgcaaacg |
100 |
Q |
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| T |
40581651 |
aagcccatgacatgaaaggtggctccagcctccacaggatgataatggaaaggataagataccggaattatatatatatatgcatgcatggatgcaaacg |
40581750 |
T |
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| Q |
101 |
ttgttgattccgattcataaaccatttgcaattccaatcactataaaagaaatattgttgggta---------------------tgcatgtgctctagt |
179 |
Q |
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| T |
40581751 |
ttgttgattccgattcataaaccatttgcaattcaaatcactataaaagaaacatttttgggtaagtactaaggtgtactgtatatgcatgcgctctagt |
40581850 |
T |
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| Q |
180 |
gcaacatgtcatgtcttttatagcatctccatatatggcttccattatttcaaatcaaacttatgtaactgacgcgta |
257 |
Q |
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| T |
40581851 |
gcaacatgtcatgtcttttatagcatctccatatatggcttccattatttcaaatcaaacttatgtaactgacgcgta |
40581928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 265 - 368
Target Start/End: Original strand, 40582001 - 40582104
Alignment:
| Q |
265 |
gtaagatgtaaaatctagggagaggagattaattgttcccaaaactaatcattattcatttactccctttgattcaaaacgataccgattggttttgtaa |
364 |
Q |
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| T |
40582001 |
gtaagatgtaaaatctagggagaggagattaattgttcccaaaactaatcattattcatttactccctttgattcaaaacgataccgattggttttgtaa |
40582100 |
T |
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| Q |
365 |
aatt |
368 |
Q |
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|||| |
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| T |
40582101 |
aatt |
40582104 |
T |
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