View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4847_high_1 (Length: 709)
Name: NF4847_high_1
Description: NF4847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4847_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 387 - 693
Target Start/End: Complemental strand, 4650445 - 4650140
Alignment:
| Q |
387 |
ctaggtgaattattgctgacatataaaacctgaaaaggacatattaggtaactacnnnnnnnnnggacatattaggtgatgtgtgaggggcatgtcaatt |
486 |
Q |
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| T |
4650445 |
ctaggtgaattattgctgacatatacaacctgaaaaggacatattaggtaactacaaaaaaaa-ggacatattaggtgatgtgtgaggggcatgtcaatt |
4650347 |
T |
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| Q |
487 |
attaacacgtacgttttgttggcacataaataaaaaattgtattaatttcaaatttatggttgcagggatacagaattatatcatggtaaaactgcagtt |
586 |
Q |
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| T |
4650346 |
attaacacgtacgttttgttggcacataaataaaaaattgtattaatttcaaatttatggttgcagggatacagaattatatcatggtaaaactgcagtt |
4650247 |
T |
|
| Q |
587 |
caatacaaatcatctgagagaaagaagcttgaagaagaaggatggagaattattggaaacagtggagaccaatggagtgatattcttggaaccaacactg |
686 |
Q |
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| T |
4650246 |
caatacaaatcatctgagagaaagaagcttgaagaagaaggatggagaattattggaaacagtggagaccaatggagtgatattcttggaaccaacactg |
4650147 |
T |
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| Q |
687 |
gtgaaag |
693 |
Q |
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||||||| |
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| T |
4650146 |
gtgaaag |
4650140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 261
Target Start/End: Complemental strand, 4650815 - 4650570
Alignment:
| Q |
16 |
cagagacacaaaaattgtacaacaaactggtaaatcttggtgttaagattgcattcttaacaggaagaccactcaaacagaaggacattacagctaagaa |
115 |
Q |
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| T |
4650815 |
cagagacacaaaaattgtacaacaaactggtaaatcttggtgttaagattgcattcttaacaggaagaccactcaaacagaaggacattacagctaagaa |
4650716 |
T |
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| Q |
116 |
cttgaaagaagctggctaccacacatatgaaaagctaattttgaagtaagttttctaacattaattaattgttcataggagaaagtaattggaattatga |
215 |
Q |
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| T |
4650715 |
cttgaaagaagctggctaccacacatatgaaaagctaattttgaagtaagttttctaacattaattaattgttcataggagaaagtaattggaattatga |
4650616 |
T |
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| Q |
216 |
gtcataaccttctatatttacaatagagtatattcaatgtcatgat |
261 |
Q |
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| T |
4650615 |
gtcataaccttctatatttacaatagagtatattcaatgtcatgat |
4650570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 565 - 693
Target Start/End: Original strand, 23681988 - 23682116
Alignment:
| Q |
565 |
atatcatggtaaaactgcagttcaatacaaatcatctgagagaaagaagcttgaagaagaaggatggagaattattggaaacagtggagaccaatggagt |
664 |
Q |
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| T |
23681988 |
atatcatggtaaaatagcatttcaatacaaatcatctgagagaaagaagcttgaagaagaaggatggagaattattggaaatagtggagaccaatggagt |
23682087 |
T |
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| Q |
665 |
gatattcttggaaccaacactggtgaaag |
693 |
Q |
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| T |
23682088 |
gatattcttggaaccaacactggtgaaag |
23682116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 564 - 693
Target Start/End: Complemental strand, 4645975 - 4645846
Alignment:
| Q |
564 |
tatatcatggtaaaactgcagttcaatacaaatcatctgagagaaagaagcttgaagaagaaggatggagaattattggaaacagtggagaccaatggag |
663 |
Q |
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|||||||||||||||| |||||| |||||||||||||||||||||||| | || |||||||||| |||||| ||||||||| |||||| |||||||| |
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| T |
4645975 |
tatatcatggtaaaacagcagttacatacaaatcatctgagagaaagaaattggaggaagaaggatacagaattgttggaaacattggagatcaatggag |
4645876 |
T |
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| Q |
664 |
tgatattcttggaaccaacactggtgaaag |
693 |
Q |
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| T |
4645875 |
tgatattcttggaaccaatactggtgaaag |
4645846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 105 - 181
Target Start/End: Original strand, 23680683 - 23680759
Alignment:
| Q |
105 |
acagctaagaacttgaaagaagctggctaccacacatatgaaaagctaattttgaagtaagttttctaacattaatt |
181 |
Q |
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| T |
23680683 |
acagctaagaacttgaaacaagctggctaccacacatatgaaaagctaattttgaagtaagttttctaacattaatt |
23680759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 23679499 - 23679594
Alignment:
| Q |
16 |
cagagacacaaaaattgtacaacaaactggtaaatcttggtgttaagattgcattcttaacaggaagaccactcaaacagaaggacattacagcta |
111 |
Q |
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| T |
23679499 |
cagagacacaaaaattgtacaacaaactggtaaatcttggtgtcaaatttgtgttcttaacaggaagaccactcaaacagaaggacattacggcta |
23679594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 25 - 120
Target Start/End: Complemental strand, 4646441 - 4646346
Alignment:
| Q |
25 |
aaaaattgtacaacaaactggtaaatcttggtgttaagattgcattcttaacaggaagaccactcaaacagaaggacattacagctaagaacttga |
120 |
Q |
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||||||||||||| ||| || | ||||||| | |||||||| ||||||||||| ||||||||||||||||| || ||||||||||||||||||| |
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| T |
4646441 |
aaaaattgtacaataaattgttgtctcttggtatcaagattgcgttcttaacaggcagaccactcaaacagaaagaaattacagctaagaacttga |
4646346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 536 - 657
Target Start/End: Complemental strand, 41872375 - 41872254
Alignment:
| Q |
536 |
caaatttatggttgcagggatacagaattatatcatggtaaaactgcagttcaatacaaatcatctgagagaaagaagcttgaagaagaaggatggagaa |
635 |
Q |
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||||||| |||| |||||||||| | |||||||||||||||| |||||| ||||||||| || |||||||||||||| || |||||||||| | || |
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| T |
41872375 |
caaatttgtggtctcagggatacatcaatatatcatggtaaaacagcagttacatacaaatcgtcagagagaaagaagctggaggaagaaggatacaaaa |
41872276 |
T |
|
| Q |
636 |
ttattggaaacagtggagacca |
657 |
Q |
| |
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| T |
41872275 |
tcattggaaacataggagacca |
41872254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 172
Target Start/End: Complemental strand, 41872660 - 41872538
Alignment:
| Q |
50 |
tcttggtgttaagattgcattcttaacaggaagaccactcaaacagaaggacattacagctaagaacttgaaagaagctggctaccacacatatgaaaag |
149 |
Q |
| |
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||||||| | ||||||| ||||||||| |||||| || |||||||||| |||| ||||| ||||| |||| | ||||||||||| ||| ||||| |
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| T |
41872660 |
tcttggtatcaagattgtattcttaactggaagagcaaacaaacagaagaacataacagccaagaatttgagacttgctggctaccatacacgggaaaaa |
41872561 |
T |
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| Q |
150 |
ctaattttgaagtaagttttcta |
172 |
Q |
| |
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||||||| |||||||||||||| |
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| T |
41872560 |
ctaatttgcaagtaagttttcta |
41872538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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