View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4847_high_12 (Length: 229)
Name: NF4847_high_12
Description: NF4847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4847_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 4 - 165
Target Start/End: Original strand, 9743693 - 9743854
Alignment:
| Q |
4 |
aagctacctcacacacctccacctcgtgcaatgacaccgtcacctaagataactcctataacaccaccaactcctaccacatcacaaccacctaagacga |
103 |
Q |
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| T |
9743693 |
aagctacctcacacacctccacctcgtgcaatgacaccgtcacctaagataactcctataacaccaccaactcctatcacatcacaaccacctaagacga |
9743792 |
T |
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| Q |
104 |
ctcctgccaaaccaccaacactgactccttttggacaaccaactcgtccagtaacacaacca |
165 |
Q |
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| T |
9743793 |
ctcctgccaaatcaccaactctgactccttctggacaaccaactcgtccagtaacccaacca |
9743854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 4 - 212
Target Start/End: Original strand, 9743204 - 9743433
Alignment:
| Q |
4 |
aagctacctcacacacctccacctcgtgcaatgacaccgtcacctaagataactcctataacaccaccaactcctaccacatcacaaccacctaagacga |
103 |
Q |
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| T |
9743204 |
aagctacctcccacacaaccacctcgtccaacgacatcaccacctaagataactcctataacaccaccgactcctaccacatcacaaccacctaagacga |
9743303 |
T |
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| Q |
104 |
ctcctgccaaaccaccaa---------------------cactgactccttttggacaaccaactcgtccagtaacacaaccacctaggaatcctcctcc |
182 |
Q |
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| T |
9743304 |
ctcttgccaaaccaccaactcttaccacaccaccaccatctctgactccttctggacaaccacctcgtccagtaacacaacaacctaggaatcctccaac |
9743403 |
T |
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| Q |
183 |
ttcaacaccaccaacttcttccacacttcc |
212 |
Q |
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| T |
9743404 |
ttcaacaccaccaactccttcaacacttcc |
9743433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 9742751 - 9742851
Alignment:
| Q |
22 |
ccacctcgtgcaatgacaccgtcacctaagataactcctataacaccaccaactcctaccacatcacaaccacctaagacgactcctgccaaaccaccaa |
121 |
Q |
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| T |
9742751 |
ccacctcgtccaacgacatcaccacctaagataactcctataacaccaccgactcctaccaaatcacaaccacctaagacgactcctgccaaaccaccaa |
9742850 |
T |
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| Q |
122 |
c |
122 |
Q |
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| T |
9742851 |
c |
9742851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 124 - 199
Target Start/End: Original strand, 9742874 - 9742949
Alignment:
| Q |
124 |
ctgactccttttggacaaccaactcgtccagtaacacaaccacctaggaatcctcctccttcaacaccaccaactt |
199 |
Q |
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|||||||||| |||||||||| |||||||||||||||||| ||||||||||||||| ||||||||| ||||||| |
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| T |
9742874 |
ctgactccttctggacaaccacctcgtccagtaacacaacaacctaggaatcctccaacttcaacacttccaactt |
9742949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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