View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4847_high_3 (Length: 439)
Name: NF4847_high_3
Description: NF4847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4847_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 13 - 420
Target Start/End: Original strand, 26559988 - 26560391
Alignment:
| Q |
13 |
aatatattctagagccaaaaaccattaattctagctttatgtataatcagttcttgaggcaaaatcatcttaggtctcactcgtttacttttagaaaaca |
112 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
26559988 |
aatatcttctagagccaaaaaccattaattctagctttatgtataatcagttcttgaggcaaaatcatcttaggtctc----gtttacttttagaaaaca |
26560083 |
T |
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| Q |
113 |
tcttcagttttaaaaaatttacatatcgaattgtnnnnnnngatatgaaaaactcatgtactaaacaattgtcatagatagaagagagtctagtaaaaat |
212 |
Q |
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| T |
26560084 |
tcttcaattttaaaaaatttacatatcgaattgtaaaaaaagatatgaaaaactcatgtactaaacaattgtcatagatagaagagagtctagtaaaaat |
26560183 |
T |
|
| Q |
213 |
gaattttcaaaatcaatgaaaataatattgaagagtttgattattaattacctgagagtataggttgaattccatttaagagaacagatatggcaagcaa |
312 |
Q |
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| T |
26560184 |
gaattttcaaaatcaatgaaaataatattgaagagtttgattattaattacctgagagtataggttgaattccatttaagagaacagatatggcaagcaa |
26560283 |
T |
|
| Q |
313 |
tgggatcaaatgggatacagcgtcaatgagtgtagaatcattggtgaagagtttgcttaatgaaactcgaaatattagaataagtgcagagattactaag |
412 |
Q |
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| T |
26560284 |
tgggatcaaatgggatacagcctcaatgagtgtagaatcatttgtgaagagtttgcttaatgaaactcgaaatattagaataagtgcagagaatactatg |
26560383 |
T |
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| Q |
413 |
ctgatgag |
420 |
Q |
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|||||||| |
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| T |
26560384 |
ctgatgag |
26560391 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 341
Target Start/End: Complemental strand, 39317242 - 39317160
Alignment:
| Q |
259 |
attacctgagagtataggttgaattccatttaagagaacagatatggcaagcaatgggatcaaatgggatacagcgtcaatga |
341 |
Q |
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||||||||| |||||||||||||| ||||| | || ||||| |||||||||||||| |||| | |||||||| ||||||| |
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| T |
39317242 |
attacctgacagtataggttgaatgccattcagaaggacagaaatggcaagcaatggagtcaagtcagatacagcttcaatga |
39317160 |
T |
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