View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4847_low_12 (Length: 253)
Name: NF4847_low_12
Description: NF4847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4847_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 6922134 - 6921920
Alignment:
| Q |
16 |
atcaacttgttatgactcacttttacttatattttgtaacggaagggataccaacttataccaaatacatcaacttgtaccaactcactcttactctgtt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6922134 |
atcaacttgttatgactcacttttacttatattttgtaacggaaggca--ccaacttgtatcaaatacatcaacttgtaccaactcactcttactctgtc |
6922037 |
T |
|
| Q |
116 |
gcactccactacgttcttgacgttcagccagctctcgagatccacctccgacgaccacttactttattccattaatagaatatttttccataacaataca |
215 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
6922036 |
gcactccactacgttcttgatgttcagctagctctcgagatccacctc---cgaccacttactttattccattaatagaatatttttctataataataca |
6921940 |
T |
|
| Q |
216 |
agagttcatagcgcaatgtc |
235 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
6921939 |
agagttcatagcgcaatgtc |
6921920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University