View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4847_low_16 (Length: 227)
Name: NF4847_low_16
Description: NF4847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4847_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 24 - 210
Target Start/End: Original strand, 9743247 - 9743433
Alignment:
| Q |
24 |
ctaagataactccaataacaccaccgactcctaccacatcacaaccacctaagacgactcctgccaaaccaccaactcttaccacaccaccacaacctct |
123 |
Q |
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| T |
9743247 |
ctaagataactcctataacaccaccgactcctaccacatcacaaccacctaagacgactcttgccaaaccaccaactcttaccacaccaccaccatctct |
9743346 |
T |
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| Q |
124 |
aactccttctggacaaccacctcgtccagtaacacaaccacctaggaatcctcctccttcaacaccaccaacttcttccacacttcc |
210 |
Q |
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| T |
9743347 |
gactccttctggacaaccacctcgtccagtaacacaacaacctaggaatcctccaacttcaacaccaccaactccttcaacacttcc |
9743433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 24 - 197
Target Start/End: Original strand, 9742776 - 9742949
Alignment:
| Q |
24 |
ctaagataactccaataacaccaccgactcctaccacatcacaaccacctaagacgactcctgccaaaccaccaactcttaccacaccaccacaacctct |
123 |
Q |
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||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||| |
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| T |
9742776 |
ctaagataactcctataacaccaccgactcctaccaaatcacaaccacctaagacgactcctgccaaaccaccaactctaaccacaccaccaccaactct |
9742875 |
T |
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| Q |
124 |
aactccttctggacaaccacctcgtccagtaacacaaccacctaggaatcctcctccttcaacaccaccaactt |
197 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||| |
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| T |
9742876 |
gactccttctggacaaccacctcgtccagtaacacaacaacctaggaatcctccaacttcaacacttccaactt |
9742949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 9743713 - 9743814
Alignment:
| Q |
1 |
acctcgtgcgatgacaccatcagctaagataactccaataacaccaccgactcctaccacatcacaaccacctaagacgactcctgccaaaccaccaact |
100 |
Q |
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||||||||| |||||||| ||| ||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
9743713 |
acctcgtgcaatgacaccgtcacctaagataactcctataacaccaccaactcctatcacatcacaaccacctaagacgactcctgccaaatcaccaact |
9743812 |
T |
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| Q |
101 |
ct |
102 |
Q |
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|| |
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| T |
9743813 |
ct |
9743814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 163
Target Start/End: Original strand, 9743816 - 9743854
Alignment:
| Q |
125 |
actccttctggacaaccacctcgtccagtaacacaacca |
163 |
Q |
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| T |
9743816 |
actccttctggacaaccaactcgtccagtaacccaacca |
9743854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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