View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4847_low_17 (Length: 216)
Name: NF4847_low_17
Description: NF4847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4847_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 107
Target Start/End: Complemental strand, 3540562 - 3540470
Alignment:
| Q |
15 |
cacagatatatagttatattctttttattctccaaaataaattcccctatggtaatcttnnnnnnntaactttccattaacaattttacaatt |
107 |
Q |
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| T |
3540562 |
cacagatatatagttatattctttttattctccaaaataaatccccctatggtaatcttaaaaaaataactttccattaacaattttacaatt |
3540470 |
T |
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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 191
Target Start/End: Complemental strand, 3540442 - 3540394
Alignment:
| Q |
140 |
atgcgtaaatgataacatgttaattgttatgttaatagtattatattttctt |
191 |
Q |
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| T |
3540442 |
atgcgtaaatgataacatgttaattattatgt---tagtattatattttctt |
3540394 |
T |
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