View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4847_low_4 (Length: 514)
Name: NF4847_low_4
Description: NF4847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4847_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 133 - 498
Target Start/End: Original strand, 41805146 - 41805502
Alignment:
| Q |
133 |
agagagcacttcaaatcaggatttctactgcagaagaaacaatggccgctgacaatgaagcttttcatgaaactatcacaagtactaaagagtggttcaa |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41805146 |
agagagcacttcaaatcaggatttctactgcagaagcaacaatggccgctgacaatgaagcttttcatgaaactatcacaagtactaaagagtggttcaa |
41805245 |
T |
|
| Q |
233 |
cagtgtgatatctggaatcgatactgtaagcttaaannnnnnngacaaccacaaaaatattgagaaccgcatctcaaacatctcacatgagcttcaggtt |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
41805246 |
cagtgtgatatctggaatcgatactgtaagcttaaatttttttgacatccacaaaaatattgagaaccg---------catctcacatgagcttcaggtt |
41805336 |
T |
|
| Q |
333 |
acaaaagaatatatcaataagatgaacaaggaaaggaggcagttacagacagatnnnnnnnccatttgttggaggagctgcagggtaaaagggaagagga |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41805337 |
acaaaagaatatatcaataagatgaacaaggaaaagaggcagttacagacagat-aaaaaaccatttgttggaggagctgcagggtaaaagggaagagga |
41805435 |
T |
|
| Q |
433 |
attaactctgagggaaaaggttgaaaagctagaggcaaaggcaagaaaggggg-aatcagagaagat |
498 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
41805436 |
attaactctgagggaaaaggttgaaaagctagaggcaaaggcaagaaagggggaaatcagagaagat |
41805502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 181 - 498
Target Start/End: Original strand, 41812017 - 41812332
Alignment:
| Q |
181 |
ctgacaatgaagcttttcatgaaactatcacaagtactaaagagtggttcaacagtgtgatatctggaatcgatactgtaagcttaaannnnnnngacaa |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| |||| |||||||| |||||||||| || |||||| |||||| || || | |
|
|
| T |
41812017 |
ctgacaatgaagcttttcatgaaactatcacaagtattaaaaagtgtgtcaacagtatgatatctgggatagatactataagctctaaattttcggatga |
41812116 |
T |
|
| Q |
281 |
ccacaaaaatattgagaaccgcatctcaaacatctcacatgagcttcaggttacaaaagaatatatcaataagatgaacaaggaaaggaggcagttacag |
380 |
Q |
| |
|
| ||| ||| ||||||||||||||||||||||||| | |||||||||||| ||||||||| | ||||| |||||| | ||||| | ||||||||||| |
|
|
| T |
41812117 |
ctgcaataattatgagaaccgcatctcaaacatctcatacgagcttcaggttgcaaaagaatctgtcaatgagatgagtagggaaaaggggcagttacag |
41812216 |
T |
|
| Q |
381 |
acagatnnnnnnnccatttgttggaggagctgcagggtaaaagggaagaggaattaactctgagggaaaaggttgaaaagctagaggcaaaggcaagaaa |
480 |
Q |
| |
|
|||||| |||||| ||||||||| |||||||||||| |||||||| || ||||||| | || ||||||||||||||||||||||||||||||| |
|
|
| T |
41812217 |
acagataaaaa--ccatttattggaggagttgcagggtaaaaaggaagagggatcaactctgcagaaagaggttgaaaagctagaggcaaaggcaagaaa |
41812314 |
T |
|
| Q |
481 |
gggggaatcagagaagat |
498 |
Q |
| |
|
|| ||||||||||||||| |
|
|
| T |
41812315 |
ggaggaatcagagaagat |
41812332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 178 - 498
Target Start/End: Original strand, 41798798 - 41799116
Alignment:
| Q |
178 |
ccgctgacaatgaagcttttcatgaaactatcacaagtactaaagagtggttcaacagtgtgatatctggaatcgatactgtaagcttaaannnnnnnga |
277 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||| || |||||| | ||| || || |
|
|
| T |
41798798 |
ccgctaacaatgaagcttttcatgaaactatcacaagtgttaaagtgtgtgtcaacagtgtgatatctgggatagatactttgagccggaaattttccga |
41798897 |
T |
|
| Q |
278 |
caaccacaaaaatattgagaaccgcatctcaaacatctcacatgagcttcaggttacaaaagaatatatcaataagatgaacaaggaaaggaggcagtta |
377 |
Q |
| |
|
| | ||||||| ||||||| ||| ||||||||||| ||||||||||||||| ||||||||| | ||| |||||||| | || | | |||||||| |
|
|
| T |
41798898 |
cgaaagcaaaaatcatgagaactacatatcaaacatctcccatgagcttcaggttgcaaaagaatctgtcagcaagatgaatagggtgaaggggcagtta |
41798997 |
T |
|
| Q |
378 |
cagacagatnnnnnnnccatttgttggaggagctgcagggtaaaagggaagaggaattaactctgagggaaaaggttgaaaagctagaggcaaaggcaag |
477 |
Q |
| |
|
|||| |||| |||||| ||||| ||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
41798998 |
cagagagataaagattg--tttgttagaggaactgcagggtaaaaaggaaggggaattaactctgagggaaaaggttgagaagctagaggtgaaggcaag |
41799095 |
T |
|
| Q |
478 |
aaagggggaatcagagaagat |
498 |
Q |
| |
|
||||| ||||||||||||||| |
|
|
| T |
41799096 |
aaaggaggaatcagagaagat |
41799116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 41804776 - 41804841
Alignment:
| Q |
11 |
cagagaacattagcagaacgagcagatgcatatcagaatttgaataaagaatatgaacaagttaac |
76 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41804776 |
cagagaacattagcagaacgagcagatgcatatcagaatttgaataaagaatatgaacaagttaac |
41804841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 41805049 - 41805111
Alignment:
| Q |
77 |
cttcgcctgtcaaaccaaaatatccgggacaaagaacaattgctaactgaaaagggagagagc |
139 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
41805049 |
cttcgcttgtcaaaccaaaatatccgggacaaagaacaattgctaagtgaaaagggagagagc |
41805111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 41798656 - 41798718
Alignment:
| Q |
77 |
cttcgcctgtcaaaccaaaatatccgggacaaagaacaattgctaactgaaaagggagagagc |
139 |
Q |
| |
|
|||||||||||||||||||| |||||| | |||||||||||||| |||||||| ||||||| |
|
|
| T |
41798656 |
cttcgcctgtcaaaccaaaagctccgggttacagaacaattgctaagtgaaaaggaagagagc |
41798718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 41798383 - 41798442
Alignment:
| Q |
11 |
cagagaacattagcagaacgagcagatgcatatcagaatttgaataaagaatatgaacaa |
70 |
Q |
| |
|
||||||||||| | ||||| || ||||||||||||||| |||||| |||||||| ||||| |
|
|
| T |
41798383 |
cagagaacattggaagaacaagaagatgcatatcagaagttgaatgaagaatataaacaa |
41798442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University