View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4847_low_8 (Length: 364)
Name: NF4847_low_8
Description: NF4847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4847_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 143 - 202
Target Start/End: Complemental strand, 41345456 - 41345397
Alignment:
| Q |
143 |
tcagcaacattgaagattgattagtataccgcatttcttcaattcaaatatattatgcag |
202 |
Q |
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| T |
41345456 |
tcagcaacattgaagattgattagtataccgcatttcttcaattcaaatatattatgcag |
41345397 |
T |
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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 347
Target Start/End: Complemental strand, 41345281 - 41345251
Alignment:
| Q |
317 |
tcatcatggtcgttgaaatttcaaaacttac |
347 |
Q |
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| T |
41345281 |
tcatcatggtcgttgaaatttcaaaacttac |
41345251 |
T |
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Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 17725115 - 17725049
Alignment:
| Q |
51 |
aagtgggtgtt-tttcattatatttccactgtaatcaaccttgcactagtaccaccaatcaattcat |
116 |
Q |
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| T |
17725115 |
aagtgggtgttatttcattatatttccactgtaatcaaccttgcactagtaccaccaatcaattcat |
17725049 |
T |
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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 41225995 - 41225946
Alignment:
| Q |
1 |
tgcaaaacaatattatgcaaaaatccagagcactccctcaccaaatcctc |
50 |
Q |
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| T |
41225995 |
tgcaaaacaatattatgcaaaaaaacagagcactccctcaccaactcctc |
41225946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 36480920 - 36480871
Alignment:
| Q |
1 |
tgcaaaacaatattatgcaaaaatccagagcactccctcaccaaatcctc |
50 |
Q |
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| T |
36480920 |
tgcaaaataatattatgcaaaaatacagagctctccttcaccaaatcctc |
36480871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 45814502 - 45814551
Alignment:
| Q |
1 |
tgcaaaacaatattatgcaaaaatccagagcactccctcaccaaatcctc |
50 |
Q |
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|||||||||| ||||||| | ||| |||||||||||||||||| |||||| |
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| T |
45814502 |
tgcaaaacaaaattatgctataatacagagcactccctcaccatatcctc |
45814551 |
T |
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