View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4848-Insertion-1 (Length: 901)

Name: NF4848-Insertion-1
Description: NF4848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4848-Insertion-1
NF4848-Insertion-1
[»] chr1 (37 HSPs)
chr1 (295-896)||(45823024-45823650)
chr1 (7-142)||(45822633-45822768)
chr1 (295-396)||(39277819-39277920)
chr1 (296-396)||(7714201-7714301)
chr1 (296-396)||(47422099-47422199)
chr1 (296-394)||(39277613-39277711)
chr1 (296-396)||(10394159-10394259)
chr1 (300-396)||(47421920-47422016)
chr1 (296-396)||(28990328-28990428)
chr1 (296-396)||(28990536-28990636)
chr1 (296-394)||(30049946-30050044)
chr1 (295-394)||(7714409-7714505)
chr1 (296-372)||(10719562-10719638)
chr1 (296-396)||(27334374-27334474)
chr1 (295-371)||(52285289-52285365)
chr1 (296-382)||(52285097-52285182)
chr1 (296-396)||(15158352-15158452)
chr1 (296-396)||(16959076-16959176)
chr1 (296-396)||(19920534-19920634)
chr1 (296-394)||(45822818-45822916)
chr1 (295-396)||(36076914-36077015)
chr1 (296-396)||(10394368-10394468)
chr1 (296-396)||(30050153-30050253)
chr1 (296-370)||(35814325-35814399)
chr1 (296-396)||(49186029-49186129)
chr1 (296-386)||(10719395-10719485)
chr1 (296-372)||(35814141-35814217)
chr1 (296-396)||(36077092-36077192)
chr1 (296-396)||(16958871-16958967)
chr1 (296-352)||(5682959-5683015)
chr1 (168-206)||(45822898-45822936)
chr1 (298-346)||(15158530-15158578)
chr1 (168-206)||(10719541-10719580)
chr1 (171-206)||(15158437-15158472)
chr1 (168-199)||(52285164-52285195)
chr1 (314-348)||(30049932-30049966)
chr1 (339-388)||(32692414-32692463)
[»] scaffold0086 (2 HSPs)
scaffold0086 (462-626)||(1783-1947)
scaffold0086 (20-131)||(2391-2502)
[»] chr4 (29 HSPs)
chr4 (296-396)||(55620222-55620322)
chr4 (296-396)||(55627526-55627626)
chr4 (296-386)||(51399255-51399345)
chr4 (296-396)||(1113239-1113339)
chr4 (296-394)||(36215680-36215778)
chr4 (297-396)||(8607805-8607904)
chr4 (296-386)||(49905767-49905857)
chr4 (296-396)||(17254684-17254784)
chr4 (296-386)||(44304021-44304111)
chr4 (296-396)||(24039279-24039379)
chr4 (296-372)||(35016743-35016819)
chr4 (296-372)||(44304220-44304296)
chr4 (296-370)||(14251251-14251325)
chr4 (296-396)||(1113415-1113515)
chr4 (296-396)||(24039487-24039587)
chr4 (296-396)||(29430143-29430243)
chr4 (296-396)||(48018639-48018739)
chr4 (296-386)||(14251434-14251524)
chr4 (296-386)||(49905935-49906025)
chr4 (296-396)||(29429968-29430066)
chr4 (296-415)||(43099329-43099452)
chr4 (296-396)||(55561048-55561148)
chr4 (297-376)||(17254492-17254571)
chr4 (296-370)||(51399454-51399528)
chr4 (296-352)||(35016927-35016983)
chr4 (296-396)||(51024476-51024576)
chr4 (296-366)||(36215855-36215925)
chr4 (295-356)||(55561221-55561282)
chr4 (296-351)||(17728728-17728783)
[»] chr7 (29 HSPs)
chr7 (295-396)||(6000508-6000609)
chr7 (296-396)||(4133075-4133175)
chr7 (296-396)||(8462876-8462976)
chr7 (296-386)||(30284154-30284244)
chr7 (296-386)||(472637-472727)
chr7 (296-394)||(6000685-6000783)
chr7 (296-386)||(24485773-24485863)
chr7 (296-386)||(26041546-26041636)
chr7 (296-396)||(32389680-32389780)
chr7 (296-386)||(472804-472894)
chr7 (296-376)||(24846293-24846373)
chr7 (296-396)||(43392327-43392427)
chr7 (296-386)||(30283957-30284046)
chr7 (296-396)||(37691724-37691824)
chr7 (297-372)||(16963451-16963526)
chr7 (296-371)||(26041745-26041819)
chr7 (296-386)||(16962883-16962973)
chr7 (295-372)||(24846449-24846526)
chr7 (296-396)||(32871638-32871739)
chr7 (297-376)||(4132884-4132963)
chr7 (295-394)||(18417453-18417552)
chr7 (296-396)||(7685244-7685342)
chr7 (296-366)||(8463053-8463123)
chr7 (296-346)||(37691933-37691983)
chr7 (295-370)||(24485624-24485699)
chr7 (325-396)||(25731947-25732018)
chr7 (314-370)||(32389602-32389658)
chr7 (297-394)||(38085182-38085278)
chr7 (168-206)||(24485753-24485791)
[»] chr5 (15 HSPs)
chr5 (296-386)||(35463801-35463891)
chr5 (296-386)||(14662600-14662690)
chr5 (296-386)||(18508760-18508850)
chr5 (296-396)||(8417588-8417688)
chr5 (296-386)||(1983487-1983577)
chr5 (296-385)||(9989996-9990084)
chr5 (296-370)||(35463617-35463691)
chr5 (296-373)||(9990161-9990238)
chr5 (296-396)||(18968538-18968638)
chr5 (296-386)||(17115557-17115647)
chr5 (296-372)||(18508577-18508653)
chr5 (296-396)||(36207414-36207514)
chr5 (296-370)||(14662418-14662491)
chr5 (296-348)||(8417797-8417849)
chr5 (324-396)||(18968768-18968840)
[»] chr3 (29 HSPs)
chr3 (296-394)||(49220320-49220418)
chr3 (296-394)||(52857007-52857105)
chr3 (296-396)||(11047216-11047316)
chr3 (296-396)||(31071152-31071252)
chr3 (296-376)||(46453112-46453192)
chr3 (296-396)||(49220143-49220243)
chr3 (296-386)||(4953362-4953452)
chr3 (296-370)||(26246923-26246997)
chr3 (295-394)||(26988836-26988935)
chr3 (296-370)||(13301885-13301959)
chr3 (296-370)||(13312541-13312615)
chr3 (295-372)||(24244701-24244778)
chr3 (296-396)||(18733971-18734070)
chr3 (296-396)||(28253472-28253572)
chr3 (296-396)||(28253678-28253778)
chr3 (296-386)||(26247108-26247198)
chr3 (296-386)||(43465050-43465140)
chr3 (296-372)||(24244518-24244594)
chr3 (296-386)||(43464851-43464940)
chr3 (296-362)||(52857214-52857280)
chr3 (297-396)||(11046997-11047095)
chr3 (296-366)||(6276284-6276354)
chr3 (296-370)||(46452930-46453004)
chr3 (296-396)||(31070978-31071077)
chr3 (296-371)||(6276112-6276187)
chr3 (296-370)||(4953179-4953253)
chr3 (339-370)||(18734149-18734180)
chr3 (170-211)||(31071126-31071168)
chr3 (168-206)||(43464922-43464962)
[»] chr2 (21 HSPs)
chr2 (296-396)||(12701956-12702056)
chr2 (296-386)||(36065452-36065542)
chr2 (296-372)||(16581390-16581466)
chr2 (296-373)||(36065266-36065343)
chr2 (296-396)||(12261062-12261162)
chr2 (300-396)||(12702168-12702264)
chr2 (296-386)||(16203681-16203771)
chr2 (296-386)||(25945865-25945955)
chr2 (296-386)||(38978853-38978943)
chr2 (296-396)||(21304357-21304456)
chr2 (296-370)||(10373253-10373327)
chr2 (296-372)||(25946064-25946140)
chr2 (296-375)||(16203494-16203573)
chr2 (300-396)||(2217849-2217945)
chr2 (310-364)||(38978713-38978767)
chr2 (299-344)||(45115029-45115074)
chr2 (296-396)||(3568501-3568601)
chr2 (296-372)||(10373068-10373144)
chr2 (168-199)||(16203668-16203699)
chr2 (168-206)||(38978833-38978871)
chr2 (168-206)||(16581448-16581488)
[»] chr8 (18 HSPs)
chr8 (296-386)||(21015170-21015260)
chr8 (296-396)||(36194656-36194756)
chr8 (296-386)||(10134647-10134737)
chr8 (296-396)||(12654939-12655039)
chr8 (296-386)||(10134846-10134936)
chr8 (296-396)||(13557378-13557477)
chr8 (296-376)||(18847415-18847495)
chr8 (296-396)||(31933302-31933402)
chr8 (299-396)||(36194868-36194965)
chr8 (296-396)||(31933509-31933609)
chr8 (296-372)||(40832189-40832265)
chr8 (296-394)||(12654732-12654830)
chr8 (296-370)||(21014987-21015061)
chr8 (296-396)||(18847572-18847672)
chr8 (296-386)||(40832344-40832434)
chr8 (296-396)||(13557169-13557269)
chr8 (322-394)||(15271767-15271839)
chr8 (168-206)||(31933384-31933422)
[»] scaffold0220 (2 HSPs)
scaffold0220 (296-386)||(26002-26092)
scaffold0220 (296-386)||(26201-26291)
[»] chr6 (5 HSPs)
chr6 (296-396)||(1211633-1211733)
chr6 (296-385)||(959246-959335)
chr6 (296-386)||(959048-959138)
chr6 (296-372)||(1211447-1211523)
chr6 (168-206)||(959226-959264)
[»] scaffold0130 (1 HSPs)
scaffold0130 (296-396)||(25490-25591)
[»] scaffold0009 (2 HSPs)
scaffold0009 (298-372)||(233672-233746)
scaffold0009 (328-396)||(233562-233630)


Alignment Details
Target: chr1 (Bit Score: 449; Significance: 0; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 295 - 896
Target Start/End: Original strand, 45823024 - 45823650
Alignment:
Q  295 aaattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaat 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||| |||||||||||    
T  45823024 aaattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacggactttttattacttatgggaccaaaccaatatttgaaat 45823123  T
Q  395 cac----------caattgagcatttaagccatatttttatgataaggtcggtgattgtatttaatgcttgaattgcttgattaggtgtctgctcttgaa 484  Q
    ||           ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45823124 caagttaagggatcaattgaacatttaagccatatttttatgataaggtcggtgattgtatttaatgcttgaattgcttgattaggtgtctgctcttgaa 45823223  T
Q  485 acaataattagtaaaggtgggaaagttgtggagacagatgtgcttagtttgattgagaaattgatgaatcaattgcttaagctggatggtatagtggctg 584  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45823224 acaataattagtaaaggtgggaaagttgtggagacagatgtgcttagtttgattgagaaattgatgaatcaattgcttaagctggatggtatagtggctg 45823323  T
Q  585 atggggatgttaaattgcagaggaaaatgcaggtaagattttcaaaacaatctttagtgcacnnnnnnnattaaacaaattttgccttagattttagtca 684  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||     
T  45823324 atggggatgttaaattgcagaggaaaatgcaggtaagattttcaaaacaatctttagtgcactttttttattaaacaaattttgccttagattttagtcc 45823423  T
Q  685 ttgagaaaaaattatgacatccaatttggttcttgtg-aaataacatttagtcccgggaaaaatggggataacttggtccctaatatctaattttattta 783  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  45823424 ttgagaaaaaattatgacatccaatttggttcttgtgaaaataacatttagtccc-ggaaaaat-gggataacttggtccctaatatctaattttattta 45823521  T
Q  784 tgtgtcccctgtaggtcacaagggaacaagaactttagttgtcccgagtttttgtcttagtg----------------gatcaaattaggta-tcacaat 866  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||                |||||||||||||| |||||||    
T  45823522 tgtgtcccctttaggtcacaaggg-acaagaactttagttgtcccgagtttttgtcttagtgagtttttgtcttaagagatcaaattaggtattcacaat 45823620  T
Q  867 ttctcattgagagtaaagtgattttattga 896  Q
    ||||||||||||||||||||||||||||||    
T  45823621 ttctcattgagagtaaagtgattttattga 45823650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 7 - 142
Target Start/End: Original strand, 45822633 - 45822768
Alignment:
Q  7 aagttagtggtgatggaggatcctattgctcaagagaagaggtacttggaaatgagaaagaatataaagatggaaagggctgcaaaatctatttcagaaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45822633 aagttagtggtgatggaggatcctattgctcaagagaagaggtacttggaaatgagaaagaatataaagatggaaagggctgcaaaatctatttcagaaa 45822732  T
Q  107 ttagcttggaagtagataggcttgcagggcaggtaa 142  Q
    ||||||||||||||||||||||||||||||||||||    
T  45822733 ttagcttggaagtagataggcttgcagggcaggtaa 45822768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 295 - 396
Target Start/End: Original strand, 39277819 - 39277920
Alignment:
Q  295 aaattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaat 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||| |||||||    
T  39277819 aaattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacggactttttattacttatgggaccaaaccgatacttgaaat 39277918  T
Q  395 ca 396  Q
    ||    
T  39277919 ca 39277920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 296 - 396
Target Start/End: Complemental strand, 7714301 - 7714201
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatc 395  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||| || |||||    
T  7714301 aattaaattaacagaaaggaccaaactgatactttaaataaagttaagggacctagacagactttttattacttatgggaccaaaccgatacttaaaatc 7714202  T
Q  396 a 396  Q
    |    
T  7714201 a 7714201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 296 - 396
Target Start/End: Original strand, 47422099 - 47422199
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatc 395  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||| ||||||||| ||||||||    
T  47422099 aattaaattaacagaaatgaccaaaccgatactttaaataaagttaagggacctaaacagacctcttattacttatgggaccaaaccgatacttgaaatc 47422198  T
Q  396 a 396  Q
    |    
T  47422199 a 47422199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 296 - 394
Target Start/End: Complemental strand, 39277711 - 39277613
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaat 394  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||| |||| |||||||    
T  39277711 aattaaattaacagaaaggaccaaactgatactttaaataaagttaagggacctaaacggactttttattacttatgggaccaaactgatacttgaaat 39277613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 296 - 396
Target Start/End: Complemental strand, 10394259 - 10394159
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatc 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  || |||||||||||||| ||| ||||||||| ||||||||    
T  10394259 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggatctaaacgaaccttttattacttatgggaccaaaccgatacttgaaatc 10394160  T
Q  396 a 396  Q
    |    
T  10394159 a 10394159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 300 - 396
Target Start/End: Complemental strand, 47422016 - 47421920
Alignment:
Q  300 aaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatca 396  Q
    ||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||    
T  47422016 aaattaacataaaggaccaaactgataatttaaataaagttaagggacctaaacagacattttattacttatgggaccaaaccgatatttgaaatca 47421920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 296 - 396
Target Start/End: Complemental strand, 28990428 - 28990328
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatc 395  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| | ||| |||||||||||||| ||| ||||||||| ||||||||    
T  28990428 aattaaattaacaaaaaggaccagaccgatactttaaataaagttaagggacctaagcggaccttttattacttatgggaccaaaccgatacttgaaatc 28990329  T
Q  396 a 396  Q
    |    
T  28990328 a 28990328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 296 - 396
Target Start/End: Original strand, 28990536 - 28990636
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatc 395  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||| |||||||||||||| ||| ||||| ||| ||||||||    
T  28990536 aattaaattaacagaaaggaccaaactgatactttaaatgaagttaagggacctaaacggaccttttattacttatgggaccaaaccaatacttgaaatc 28990635  T
Q  396 a 396  Q
    |    
T  28990636 a 28990636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 296 - 394
Target Start/End: Complemental strand, 30050044 - 30049946
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaat 394  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||  |||| ||||||||||||| |||||||| ||||||||| |||||||    
T  30050044 aattaaattaacagaaaagaccaaactgatactttaaataaagttaagggactcaaacggactttttattacatatgagaccaaaccgatacttgaaat 30049946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 295 - 394
Target Start/End: Original strand, 7714409 - 7714505
Alignment:
Q  295 aaattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaat 394  Q
    ||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||| |||||||||||||  ||||||| |||||||||||||||||    
T  7714409 aaattaaattaacagaaaggaccaaactgata-tttaaataaacttaagggacctaaacggactttttattac--atgagactaaaccgatatttgaaat 7714505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 296 - 372
Target Start/End: Original strand, 10719562 - 10719638
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatg 372  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  10719562 aattaaattaacagaaaggatcaaaccgatactttaaataaagttaagggacctaaacggaccttttattacttatg 10719638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 296 - 396
Target Start/End: Complemental strand, 27334474 - 27334374
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatc 395  Q
    |||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||| ||  |||||||||||||||||| ||| ||||| ||||||||    
T  27334474 aattaaattaacagaagggaccaaaccattactttaaataaagttaagggacctaaacggatcttttattacttatgagaccaaatcgatacttgaaatc 27334375  T
Q  396 a 396  Q
    |    
T  27334374 a 27334374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 295 - 371
Target Start/End: Original strand, 52285289 - 52285365
Alignment:
Q  295 aaattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttat 371  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  52285289 aaattaaattaacagaaatgaccaaacggatactttaaataaagttaagggacctaaacagaccttttattacttat 52285365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 296 - 382
Target Start/End: Complemental strand, 52285182 - 52285097
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaacc 382  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||    
T  52285182 aattaaattaacagaaaggatcaaactgatactttaaataaagttaa-ggacctaaacggactttttattacttatgagaccaaacc 52285097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 296 - 396
Target Start/End: Complemental strand, 15158452 - 15158352
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatc 395  Q
    ||||||||||| |||| ||||||||||||||||| ||||||| |||||||||||||||  || |||||||||||||| ||| ||||||||| ||||||||    
T  15158452 aattaaattaatagaacggaccaaaccgatacttgaaataaatttaagggacctaaacgaaccttttattacttatgggaccaaaccgatacttgaaatc 15158353  T
Q  396 a 396  Q
    |    
T  15158352 a 15158352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 296 - 396
Target Start/End: Original strand, 16959076 - 16959176
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatc 395  Q
    ||||||||| ||| |||||| ||||| ||| |||||||||||||||||||||||||||| | ||||||||||||||| ||| ||||||||| ||||||||    
T  16959076 aattaaattgacataaaggatcaaactgatgctttaaataaagttaagggacctaaacataatttttattacttatgggaccaaaccgatacttgaaatc 16959175  T
Q  396 a 396  Q
    |    
T  16959176 a 16959176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 296 - 396
Target Start/End: Complemental strand, 19920634 - 19920534
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatc 395  Q
    ||||||||||||| ||  |||||||| ||||||||||||||||||||||||||||||| ||  |||||||||||||| ||| ||||||||| ||||||||    
T  19920634 aattaaattaacataagagaccaaactgatactttaaataaagttaagggacctaaacggatcttttattacttatgggaccaaaccgatacttgaaatc 19920535  T
Q  396 a 396  Q
    |    
T  19920534 a 19920534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 296 - 394
Target Start/End: Complemental strand, 45822916 - 45822818
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaat 394  Q
    ||||||||||||||||||||| || | |||||||||||||||||||||| |||||||| |||||||||||||||||| ||| |||  |||| |||||||    
T  45822916 aattaaattaacagaaaggactaagctgatactttaaataaagttaaggaacctaaacggactttttattacttatgggaccaaattgatacttgaaat 45822818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 295 - 396
Target Start/End: Complemental strand, 36077015 - 36076914
Alignment:
Q  295 aaattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaat 394  Q
    |||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||  || |||||||||||||| ||  || |||||| |||||||    
T  36077015 aaattatattaacagaagagaccaaaccgatactttaaataaagttaagggacctaaacgaaccttttattacttatgggatcaagccgatacttgaaat 36076916  T
Q  395 ca 396  Q
    ||    
T  36076915 ca 36076914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 296 - 396
Target Start/End: Original strand, 10394368 - 10394468
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatc 395  Q
    ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||| ||||| || ||||| ||| ||| | ||| ||||||||    
T  10394368 aattaaattaacaaaagggaccaaaccgatactttaaataaagttaagggacctaaacggaccttttaatatttatgggaccaaaacaatacttgaaatc 10394467  T
Q  396 a 396  Q
    |    
T  10394468 a 10394468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 296 - 396
Target Start/End: Original strand, 30050153 - 30050253
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatc 395  Q
    ||||||||||||||||| |||||||  ||||||||||||||||||||| ||| ||| | ||||||||||||||| || ||| ||||||||| ||||||||    
T  30050153 aattaaattaacagaaatgaccaaattgatactttaaataaagttaagagacataatcggactttttattacttgtgcgaccaaaccgatacttgaaatc 30050252  T
Q  396 a 396  Q
    |    
T  30050253 a 30050253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 296 - 370
Target Start/End: Original strand, 35814325 - 35814399
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattactta 370  Q
    |||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  35814325 aattaaattatcagaaaggatcaaactgatactttaaataaagttaagggacctaaacggaccttttattactta 35814399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 296 - 396
Target Start/End: Complemental strand, 49186129 - 49186029
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatc 395  Q
    ||||||||||||||||  |||||||||  |||||||||||||||||| |||| ||||| ||| ||||||||||||| |||| |||| |||| ||||||||    
T  49186129 aattaaattaacagaagtgaccaaaccattactttaaataaagttaaaggacgtaaacggaccttttattacttataagaccaaactgatacttgaaatc 49186030  T
Q  396 a 396  Q
    |    
T  49186029 a 49186029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 296 - 386
Target Start/End: Complemental strand, 10719485 - 10719395
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgata 386  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||| || |||| ||| |||||||| ||||| ||| ||| |||||    
T  10719485 aattaaattaacaaaaaggaccaaaccgatacttttaataaagttaaggggccaaaacggaccttttattatttatgggaccaaagcgata 10719395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 296 - 372
Target Start/End: Complemental strand, 35814217 - 35814141
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatg 372  Q
    ||||||||||| ||||||||||||||||| ||||| | ||||||||||||| | |||| ||| ||||||||||||||    
T  35814217 aattaaattaatagaaaggaccaaaccgacactttcactaaagttaagggagcaaaacggaccttttattacttatg 35814141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 296 - 396
Target Start/End: Original strand, 36077092 - 36077192
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatc 395  Q
    ||||||| ||||| || |||| ||| |  |||||||||||||||||| | |||||||||||| |||||||||||||| ||  ||||||||| ||||||||    
T  36077092 aattaaaataacataagggacaaaaacattactttaaataaagttaatgaacctaaacagaccttttattacttatgggagcaaaccgatacttgaaatc 36077191  T
Q  396 a 396  Q
    |    
T  36077192 a 36077192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 296 - 396
Target Start/End: Complemental strand, 16958967 - 16958871
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatc 395  Q
    ||||||||||||||||    |||||| |||| |||||||||||||||||||||||||  ||| |||||||| ||||| ||| ||||||| | ||||||||    
T  16958967 aattaaattaacagaa----ccaaactgataatttaaataaagttaagggacctaaatggaccttttattatttatgggaccaaaccgacacttgaaatc 16958872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 296 - 352
Target Start/End: Complemental strand, 5683015 - 5682959
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaa 352  Q
    ||||||||||| ||||||||||||| ||||||||||||||| ||||| |||||||||    
T  5683015 aattaaattaatagaaaggaccaaaacgatactttaaataacgttaaaggacctaaa 5682959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 206
Target Start/End: Original strand, 45822898 - 45822936
Alignment:
Q  168 cctttctgttaatttaattcaaaaaatgttaagtttagg 206  Q
    |||||||||||||||||||||||||||||||||||||||    
T  45822898 cctttctgttaatttaattcaaaaaatgttaagtttagg 45822936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 298 - 346
Target Start/End: Original strand, 15158530 - 15158578
Alignment:
Q  298 ttaaattaacagaaaggaccaaaccgatactttaaataaagttaaggga 346  Q
    |||||||||||||||||||||||   || ||||||||||||||||||||    
T  15158530 ttaaattaacagaaaggaccaaattaatgctttaaataaagttaaggga 15158578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 206
Target Start/End: Complemental strand, 10719580 - 10719541
Alignment:
Q  168 cctttctgttaatttaattcaa-aaaatgttaagtttagg 206  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  10719580 cctttctgttaatttaattcaaaaaaatgttaagtttagg 10719541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 206
Target Start/End: Original strand, 15158437 - 15158472
Alignment:
Q  171 ttctgttaatttaattcaaaaaatgttaagtttagg 206  Q
    |||| |||||||||||||||||||||||||||||||    
T  15158437 ttctattaatttaattcaaaaaatgttaagtttagg 15158472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 199
Target Start/End: Original strand, 52285164 - 52285195
Alignment:
Q  168 cctttctgttaatttaattcaaaaaatgttaa 199  Q
    ||||||||||||||||||||||||||||||||    
T  52285164 cctttctgttaatttaattcaaaaaatgttaa 52285195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 314 - 348
Target Start/End: Complemental strand, 30049966 - 30049932
Alignment:
Q  314 gaccaaaccgatactttaaataaagttaagggacc 348  Q
    |||||||||||||||| ||||||||||||||||||    
T  30049966 gaccaaaccgatacttgaaataaagttaagggacc 30049932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 339 - 388
Target Start/End: Original strand, 32692414 - 32692463
Alignment:
Q  339 ttaagggacctaaacagactttttattacttatgagacgaaaccgatatt 388  Q
    |||||||| || |||||||||||||||||||| ||||| ||| |||||||    
T  32692414 ttaagggatctgaacagactttttattacttaagagaccaaagcgatatt 32692463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 81; Significance: 1e-37; HSPs: 2)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 462 - 626
Target Start/End: Complemental strand, 1947 - 1783
Alignment:
Q  462 ttgattaggtgtctgctcttgaaacaataattagtaaaggtgggaaagttgtggagacagatgtgcttagtttgattgagaaattgatgaatcaattgct 561  Q
    |||||||||| |||||| ||||| |||||||||| ||||||||||||||||| ||  ||||| ||||| || | ||||||  ||||||||||||||||||    
T  1947 ttgattaggtatctgcttttgaatcaataattagcaaaggtgggaaagttgtagaatcagatatgcttggtcttattgagctattgatgaatcaattgct 1848  T
Q  562 taagctggatggtatagtggctgatggggatgttaaattgcagaggaaaatgcaggtaagatttt 626  Q
    |||  ||||||||||| | |||||||| ||||| |||||||| |||||||||||||||| |||||    
T  1847 taaattggatggtataattgctgatggtgatgtcaaattgcaaaggaaaatgcaggtaacatttt 1783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 2502 - 2391
Alignment:
Q  20 tggaggatcctattgctcaagagaagaggtacttggaaatgagaaagaatataaagatggaaagggctgcaaaatctatttcagaaattagcttggaagt 119  Q
    |||| |||||||||  ||||||||| |||   |||||| |||| ||||||   |||||||| |  |||||||||||||| ||| ||||||||||||||||    
T  2502 tggaagatcctattagtcaagagaaaaggattttggaattgaggaagaatgctaagatggagaaagctgcaaaatctatctcacaaattagcttggaagt 2403  T
Q  120 agataggcttgc 131  Q
    ||||||||||||    
T  2402 agataggcttgc 2391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 1e-37; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 296 - 396
Target Start/End: Complemental strand, 55620322 - 55620222
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatc 395  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||    
T  55620322 aattaaattaacagaaaggaccaaactgatacttttaataaagttaagggacctaaacagactttttattacttatgggaccaaaccgatacttgaaatc 55620223  T
Q  396 a 396  Q
    |    
T  55620222 a 55620222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 296 - 396
Target Start/End: Complemental strand, 55627626 - 55627526
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatc 395  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||    
T  55627626 aattaaattaacagaaaggaccaaactgatacttttaataaagttaagggacctaaacagactttttattacttatgggaccaaaccgatacttgaaatc 55627527  T
Q  396 a 396  Q
    |    
T  55627526 a 55627526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 296 - 386
Target Start/End: Complemental strand, 51399345 - 51399255
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgata 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||    
T  51399345 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgggaccaaagcgata 51399255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 296 - 396
Target Start/End: Complemental strand, 1113339 - 1113239
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatc 395  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||| ||||||||    
T  1113339 aattaaattaacagaaacgaccaaactgatactttaaataaagttaagggacctaaacagactttttattacttatgggaccaacccgatacttgaaatc 1113240  T
Q  396 a 396  Q
    |    
T  1113239 a 1113239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 296 - 394
Target Start/End: Complemental strand, 36215778 - 36215680
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaat 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||| |||||||||||||| ||| ||||||||| |||||||    
T  36215778 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaaggaatctaaacggaccttttattacttatgggaccaaaccgatacttgaaat 36215680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 297 - 396
Target Start/End: Complemental strand, 8607904 - 8607805
Alignment:
Q  297 attaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatca 396  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||| ||  ||||||||| |||||||||    
T  8607904 attaaattaacagaaaggatcaaaccgatactttaaataaagttaagggacttaaacggaccttttattacttatgggatcaaaccgatacttgaaatca 8607805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 296 - 386
Target Start/End: Complemental strand, 49905857 - 49905767
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgata 386  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||| |||||    
T  49905857 aattaaattaacagaaatgatcaaaccgatactttaaataaagttaagggacctaaacggaccttttattacttatgagaccaaagcgata 49905767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 296 - 396
Target Start/End: Original strand, 17254684 - 17254784
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatc 395  Q
    ||||||||||||||||| |||||||| || |||||||||||||||||||||||||||| ||| |||||||||||||||||  ||||| ||| ||||||||    
T  17254684 aattaaattaacagaaaagaccaaactgacactttaaataaagttaagggacctaaacggacattttattacttatgagatcaaaccaatacttgaaatc 17254783  T
Q  396 a 396  Q
    |    
T  17254784 a 17254784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 296 - 386
Target Start/End: Complemental strand, 44304111 - 44304021
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgata 386  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||| |||||||||||||| ||| ||| |||||    
T  44304111 aattaaattaacagaaaggaccaaaccgatactttcaataaagttaagggaccaaaacggaccttttattacttatgggaccaaagcgata 44304021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 296 - 396
Target Start/End: Complemental strand, 24039379 - 24039279
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatc 395  Q
    ||||||||||| ||||| || ||||||||||||||||||||| |||| ||||||||||  ||||||||||||||||| ||| ||||||||| ||||||||    
T  24039379 aattaaattaatagaaaagatcaaaccgatactttaaataaaattaaaggacctaaacgaactttttattacttatgggaccaaaccgatacttgaaatc 24039280  T
Q  396 a 396  Q
    |    
T  24039279 a 24039279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 296 - 372
Target Start/End: Complemental strand, 35016819 - 35016743
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatg 372  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||    
T  35016819 aattaaattaaccgaaaggaccaaaccgatactttcaataaagttaagggaccaaaacggactttttattacttatg 35016743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 296 - 372
Target Start/End: Original strand, 44304220 - 44304296
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatg 372  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  44304220 aattaaattaacataaaggatcaaaccgatactttaaataaagttaagggacctaaacggaccttttattacttatg 44304296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 296 - 370
Target Start/End: Complemental strand, 14251325 - 14251251
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattactta 370  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  14251325 aattaaattaatagaaaggatcaaaccgatactttaaataaagttaagggacctaaacggaccttttattactta 14251251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 296 - 396
Target Start/End: Original strand, 1113415 - 1113515
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatc 395  Q
    ||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||| ||||| || ||||| ||| ||| | ||| ||||||||    
T  1113415 aattaaattaacaaaagggaccaaaccgatactttaaatgaagttaagggacctaaacagaccttttaatatttatgggaccaaatcaatacttgaaatc 1113514  T
Q  396 a 396  Q
    |    
T  1113515 a 1113515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 296 - 396
Target Start/End: Original strand, 24039487 - 24039587
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatc 395  Q
    ||||||||||||| ||| ||  |||||||||||| |||||||||||||||||||||||  || |||||||||||||||||| ||||| ||| ||||||||    
T  24039487 aattaaattaacataaatgattaaaccgatacttaaaataaagttaagggacctaaacgaaccttttattacttatgagaccaaaccaatacttgaaatc 24039586  T
Q  396 a 396  Q
    |    
T  24039587 a 24039587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 296 - 396
Target Start/End: Original strand, 29430143 - 29430243
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatc 395  Q
    |||||||||||||||||||||| ||| ||||||||||||||| |||||||| ||||||| || |||||||||||||| ||| ||||| ||| || |||||    
T  29430143 aattaaattaacagaaaggaccgaactgatactttaaataaaattaagggatctaaacataccttttattacttatgggaccaaaccaatacttaaaatc 29430242  T
Q  396 a 396  Q
    |    
T  29430243 a 29430243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 296 - 396
Target Start/End: Complemental strand, 48018739 - 48018639
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatc 395  Q
    ||||||||||| ||||| || |||| |||||||||||||||| |||||||| |||||||||  ||||||||||| || ||| |||||||||||| |||||    
T  48018739 aattaaattaatagaaatgatcaaatcgatactttaaataaaattaagggatctaaacagatattttattacttttgggaccaaaccgatattttaaatc 48018640  T
Q  396 a 396  Q
    |    
T  48018639 a 48018639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 296 - 386
Target Start/End: Original strand, 14251434 - 14251524
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgata 386  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||| ||||| | || ||| |||||||||||||| ||| ||| |||||    
T  14251434 aattaaattaacagaaaggaccaaactgatactttcaataaagttaaaggaccaatacggaccttttattacttatgggaccaaagcgata 14251524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 296 - 386
Target Start/End: Original strand, 49905935 - 49906025
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgata 386  Q
    |||||||||||||||||||| |||||||||| ||| ||||||||||||||  | |||| ||| |||||||||||||| ||||||| |||||    
T  49905935 aattaaattaacagaaaggatcaaaccgatagttttaataaagttaaggggtcaaaacggacattttattacttatgggacgaaagcgata 49906025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 296 - 396
Target Start/End: Complemental strand, 29430066 - 29429968
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatc 395  Q
    ||||||||||| ||||| |||||||  ||||||||||||||||||| |||| |||||| |||||||| |||||||   ||| ||||||||||||||||||    
T  29430066 aattaaattaagagaaaagaccaaattgatactttaaataaagttaggggatctaaacggactttttcttactta--ggaccaaaccgatatttgaaatc 29429969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 296 - 415
Target Start/End: Complemental strand, 43099452 - 43099329
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaat- 394  Q
    |||||||| || ||||| ||||||| ||||||||||||||||||||| |||||||||| ||| ||||||||||||||  |  |||||||||||| ||||     
T  43099452 aattaaatcaatagaaatgaccaaaacgatactttaaataaagttaa-ggacctaaacggaccttttattacttatggaatcaaaccgatatttaaaatt 43099354  T
Q  395 ----caccaattgagcatttaagcc 415  Q
         ||||||||||||||||||||    
T  43099353 aagagaccaattgagcatttaagcc 43099329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 296 - 396
Target Start/End: Complemental strand, 55561148 - 55561048
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatc 395  Q
    |||||||||||||||||  || |||| ||||||||||||||||||||| ||||| | || |||||||||||||||||  || |||| ||| |||||||||    
T  55561148 aattaaattaacagaaataacaaaactgatactttaaataaagttaagagaccttagcaaactttttattacttatggaaccaaactgatgtttgaaatc 55561049  T
Q  396 a 396  Q
    |    
T  55561048 a 55561048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 297 - 376
Target Start/End: Complemental strand, 17254571 - 17254492
Alignment:
Q  297 attaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagac 376  Q
    |||||||||||| || ||| ||||||||||||| |||||||||||||||||| ||| | || ||||||||||||||||||    
T  17254571 attaaattaacataagggatcaaaccgatacttgaaataaagttaagggaccaaaataaacattttattacttatgagac 17254492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 296 - 370
Target Start/End: Original strand, 51399454 - 51399528
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattactta 370  Q
    ||||||||||||| || ||||||||||| |||||||| ||||||||||||||| |||| ||| ||||||||||||    
T  51399454 aattaaattaacataagggaccaaaccgttactttaactaaagttaagggaccaaaacggaccttttattactta 51399528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 296 - 352
Target Start/End: Original strand, 35016927 - 35016983
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaa 352  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||    
T  35016927 aattaaattaacagaaaggatcaaactgatactttaaataaagttaagagacctaaa 35016983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 296 - 396
Target Start/End: Complemental strand, 51024576 - 51024476
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatc 395  Q
    ||||||||||||||||||||| |||| |||||||||||||| ||||||| || |||||  |  |||||||||||||| ||| ||| | ||| ||||||||    
T  51024576 aattaaattaacagaaaggactaaactgatactttaaataatgttaaggaacttaaacgaaacttttattacttatgggaccaaatcaatacttgaaatc 51024477  T
Q  396 a 396  Q
    |    
T  51024476 a 51024476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 296 - 366
Target Start/End: Original strand, 36215855 - 36215925
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttatta 366  Q
    |||||||||||||||| |||||||| || |||||| |||||||||||| || |||||| ||||||||||||    
T  36215855 aattaaattaacagaagggaccaaatcgttactttcaataaagttaagcgaactaaacggactttttatta 36215925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 295 - 356
Target Start/End: Original strand, 55561221 - 55561282
Alignment:
Q  295 aaattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacaga 356  Q
    |||||||||||| | ||| ||  |||||||||||||||||||||||||||||||||||||||    
T  55561221 aaattaaattaataaaaaagataaaaccgatactttaaataaagttaagggacctaaacaga 55561282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 296 - 351
Target Start/End: Complemental strand, 17728783 - 17728728
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaa 351  Q
    |||||||| || ||||| |||||||| ||||| ||||||||| |||||||||||||    
T  17728783 aattaaataaatagaaatgaccaaactgataccttaaataaaattaagggacctaa 17728728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 7e-36; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 295 - 396
Target Start/End: Complemental strand, 6000609 - 6000508
Alignment:
Q  295 aaattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaat 394  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||| ||| ||||||||| |||||||    
T  6000609 aaattaaattaacagaaaggaccaaactgatactttaaataaagttaagggacctaaatggactttttattacttatgggaccaaaccgatacttgaaat 6000510  T
Q  395 ca 396  Q
    ||    
T  6000509 ca 6000508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 296 - 396
Target Start/End: Original strand, 4133075 - 4133175
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatc 395  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||| |||||||||||||||||  ||||| ||| ||||||||    
T  4133075 aattaaattaacagaaaggaccaaactgacactttaaataaagttaagggacctaaacggacattttattacttatgagatcaaaccaatacttgaaatc 4133174  T
Q  396 a 396  Q
    |    
T  4133175 a 4133175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 296 - 396
Target Start/End: Complemental strand, 8462976 - 8462876
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatc 395  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||| |||||||| ||||| ||| |||| |||||||||||||    
T  8462976 aattaaattaacagaaaggatcaaaccaatactttaaataaagttaaaggacctaaacagacattttattatttatgggaccaaactgatatttgaaatc 8462877  T
Q  396 a 396  Q
    |    
T  8462876 a 8462876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 296 - 386
Target Start/End: Original strand, 30284154 - 30284244
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgata 386  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||| ||| |||||    
T  30284154 aattaaattaacagaaatgaccaaaccgatactttcaataaagttaagggacctaaacggacattttattacttatgagaccaaagcgata 30284244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 296 - 386
Target Start/End: Complemental strand, 472727 - 472637
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgata 386  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||  || |||||||||||||||||| ||| |||||    
T  472727 aattaaattaacagaaaggaccaaactgatactttcaataaagttaagggacctaaacgcaccttttattacttatgagaccaaaacgata 472637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 296 - 394
Target Start/End: Original strand, 6000685 - 6000783
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaat 394  Q
    ||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||  ||| |||| |||| |||||||    
T  6000685 aattaaattaagagaaaggacctaacggatactttaaataaagttaagggacctaaacggactttttattacttataggaccaaactgatacttgaaat 6000783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 296 - 386
Target Start/End: Original strand, 24485773 - 24485863
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgata 386  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||| ||| ||| |||||    
T  24485773 aattaaattaatagaaaggaccaaaccgacactttaaataaagttaagggacttaaacggactttttattacttatgggaccaaaacgata 24485863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 296 - 386
Target Start/End: Complemental strand, 26041636 - 26041546
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgata 386  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||| |||||||||||||| ||| ||| |||||    
T  26041636 aattaaattaacagaaaggaccaaaccgatactttcaataaagttaagggaccaaaacggaccttttattacttatgggaccaaagcgata 26041546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 296 - 396
Target Start/End: Original strand, 32389680 - 32389780
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatc 395  Q
    ||||||||||||| |||||| ||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||  ||| |||| |||| ||||||||    
T  32389680 aattaaattaacaaaaaggatcaaactgatactttaaataaagttaagggacttaaacagacattttattacttattggaccaaactgatacttgaaatc 32389779  T
Q  396 a 396  Q
    |    
T  32389780 a 32389780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 296 - 386
Target Start/End: Original strand, 472804 - 472894
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgata 386  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||  || |||||||||| ||| ||| |||||    
T  472804 aattaaattaacagaaaggatcaaaccgatactttaaataaagttaagggacctaaacggacagttcattacttatgggaccaaagcgata 472894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 296 - 376
Target Start/End: Complemental strand, 24846373 - 24846293
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagac 376  Q
    ||||||||||||| ||| || ||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  24846373 aattaaattaacataaatgatcaaactgatactttaaataaagttaagggacctaaacggaccttttattacttatgagac 24846293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 296 - 396
Target Start/End: Complemental strand, 43392427 - 43392327
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatc 395  Q
    ||||||||||||| || |||||||||||||| |||||||||||||||||||||||||| ||| ||||| || ||||| ||| ||||| ||| ||||||||    
T  43392427 aattaaattaacaaaagggaccaaaccgatattttaaataaagttaagggacctaaacggaccttttaatatttatgggaccaaaccaatacttgaaatc 43392328  T
Q  396 a 396  Q
    |    
T  43392327 a 43392327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 296 - 386
Target Start/End: Complemental strand, 30284046 - 30283957
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgata 386  Q
    ||||||||||||| |||||| |||||||||||||||||| ||||||||||| |||||| ||| |||||||||||||||||| ||| |||||    
T  30284046 aattaaattaacaaaaaggatcaaaccgatactttaaatgaagttaaggga-ctaaacggaccttttattacttatgagaccaaaacgata 30283957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 296 - 396
Target Start/End: Complemental strand, 37691824 - 37691724
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatc 395  Q
    ||||||||||||||||| |||||||  ||||||||||||||| ||||||||| ||| | ||||||||||||||||||  |  ||||||||| ||||||||    
T  37691824 aattaaattaacagaaaagaccaaagtgatactttaaataaaattaagggacttaatcggactttttattacttatggaatcaaaccgatacttgaaatc 37691725  T
Q  396 a 396  Q
    |    
T  37691724 a 37691724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 297 - 372
Target Start/End: Original strand, 16963451 - 16963526
Alignment:
Q  297 attaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatg 372  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||  ||| ||||||||||||||    
T  16963451 attaaattaacagaaaagaccaaaccgatactttcaataaagttaagggaccaaaatggacattttattacttatg 16963526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 296 - 371
Target Start/End: Original strand, 26041745 - 26041819
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttat 371  Q
    ||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  26041745 aattaaattaacataaag-atcaaaccgatactttaaataaagttaagggacctaaacaaaccttttattacttat 26041819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 296 - 386
Target Start/End: Complemental strand, 16962973 - 16962883
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgata 386  Q
    ||||||||||||| |||| | ||||  |||||||||||||||||||| |||||||||| ||| |||||||||||||||||| ||| |||||    
T  16962973 aattaaattaacataaagaatcaaaatgatactttaaataaagttaatggacctaaacggaccttttattacttatgagaccaaagcgata 16962883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 295 - 372
Target Start/End: Original strand, 24846449 - 24846526
Alignment:
Q  295 aaattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatg 372  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||||||||  |||| ||| |||||||| |||||    
T  24846449 aaattaaattaacagaaaggaccaaaccaatactttcaataaagttaagggactaaaacggaccttttattatttatg 24846526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 296 - 396
Target Start/End: Complemental strand, 32871739 - 32871638
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacaga-ctttttattacttatgagacgaaaccgatatttgaaat 394  Q
    ||||||||||||| |||| |||||||  |||||||||||||||||||||||||||||||||  ||||||||| ||||| ||| ||||| ||| || ||||    
T  32871739 aattaaattaacataaagaaccaaactcatactttaaataaagttaagggacctaaacagatttttttattatttatgggaccaaaccaatacttaaaat 32871640  T
Q  395 ca 396  Q
    ||    
T  32871639 ca 32871638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 297 - 376
Target Start/End: Complemental strand, 4132963 - 4132884
Alignment:
Q  297 attaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagac 376  Q
    |||||||||||| || ||| ||||||||||||| |||||||||||||||||| ||| | || ||||||||||||||||||    
T  4132963 attaaattaacataagggatcaaaccgatacttgaaataaagttaagggaccaaaataaaccttttattacttatgagac 4132884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 295 - 394
Target Start/End: Original strand, 18417453 - 18417552
Alignment:
Q  295 aaattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaat 394  Q
    ||||||||||||  ||||||||||||  ||||||||||||||||||||||||||||||  ||| |||||||| ||||  ||  ||||||||| |||||||    
T  18417453 aaattaaattaatggaaaggaccaaattgatactttaaataaagttaagggacctaaatggaccttttattatttataggatcaaaccgatacttgaaat 18417552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 296 - 396
Target Start/End: Complemental strand, 7685342 - 7685244
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatc 395  Q
    |||||||||||||||||| | |||||||| |||||||||||||||| || || ||||||||  ||||||||||||| |||  ||||||||| ||||||||    
T  7685342 aattaaattaacagaaag-atcaaaccga-actttaaataaagttatggaacttaaacagatattttattacttataagattaaaccgatacttgaaatc 7685245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 296 - 366
Target Start/End: Original strand, 8463053 - 8463123
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttatta 366  Q
    ||||||||||||||||  |||||||| | |||||||||||||||||||||| |||||| || |||||||||    
T  8463053 aattaaattaacagaagagaccaaactgttactttaaataaagttaagggatctaaacggaatttttatta 8463123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 296 - 346
Target Start/End: Original strand, 37691933 - 37691983
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaaggga 346  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  37691933 aattaaattaactgaaaggaccaaactgatactttaaataaagttaaggga 37691983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 295 - 370
Target Start/End: Complemental strand, 24485699 - 24485624
Alignment:
Q  295 aaattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattactta 370  Q
    |||||||||||| |||| ||||||||||  |||||||||||||||||||||||  || | ||| ||||||||||||    
T  24485699 aaattaaattaatagaagggaccaaaccattactttaaataaagttaagggactaaatcggacattttattactta 24485624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 325 - 396
Target Start/End: Complemental strand, 25732018 - 25731947
Alignment:
Q  325 tactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatca 396  Q
    ||||| |||| ||||||||||| |||| ||||| |||||||||||||| ||| ||||||||| |||||||||    
T  25732018 tacttgaaatcaagttaagggatctaagcagaccttttattacttatgggactaaaccgatacttgaaatca 25731947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 314 - 370
Target Start/End: Complemental strand, 32389658 - 32389602
Alignment:
Q  314 gaccaaaccgatactttaaataaagttaagggacctaaacagactttttattactta 370  Q
    |||||||||| ||||||||||||||||||||||| |||||  || ||||||||||||    
T  32389658 gaccaaaccgttactttaaataaagttaagggacttaaacgaaccttttattactta 32389602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 297 - 394
Target Start/End: Complemental strand, 38085278 - 38085182
Alignment:
Q  297 attaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaat 394  Q
    |||||||||||| || ||||||| |||||| || ||||||| ||||| ||  ||||||||| ||||||||||||||| |  |||| ||||||| ||||    
T  38085278 attaaattaacataa-ggaccaagccgatatttaaaataaaattaagagatttaaacagacattttattacttatgatatcaaactgatatttaaaat 38085182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 206
Target Start/End: Complemental strand, 24485791 - 24485753
Alignment:
Q  168 cctttctgttaatttaattcaaaaaatgttaagtttagg 206  Q
    ||||||| ||||||||||| |||||||||||||||||||    
T  24485791 cctttctattaatttaattaaaaaaatgttaagtttagg 24485753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 5e-34; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 296 - 386
Target Start/End: Original strand, 35463801 - 35463891
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgata 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||| |||||    
T  35463801 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggaccgaaacagactttttattacttatgggaccaaagcgata 35463891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 296 - 386
Target Start/End: Original strand, 14662600 - 14662690
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgata 386  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||| ||| ||| |||||    
T  14662600 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacggtttttttattacttatgggaccaaagcgata 14662690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 296 - 386
Target Start/End: Original strand, 18508760 - 18508850
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgata 386  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||| ||| |||||    
T  18508760 aattaaattaacagaaaagatcaaaccgatactttaaataaagttaaggaacctaaacagactttttattatttatgggaccaaatcgata 18508850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 296 - 396
Target Start/End: Complemental strand, 8417688 - 8417588
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatc 395  Q
    ||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||| ||  ||||||||||| |||||  ||||||||| ||||||||    
T  8417688 aattaaattaacagaaatgaccagactgatactttaaataaagttaagggacctaaacggaacttttattacttgtgagatcaaaccgatacttgaaatc 8417589  T
Q  396 a 396  Q
    |    
T  8417588 a 8417588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 296 - 386
Target Start/End: Original strand, 1983487 - 1983577
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgata 386  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| || |||| ||| |||||||||||||| ||| ||| |||||    
T  1983487 aattaaattaacagaaaggaccaaaccgatacttttaataaagttaaggggccaaaacggaccttttattacttatgggaccaaagcgata 1983577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 296 - 385
Target Start/End: Complemental strand, 9990084 - 9989996
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgat 385  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| || |||||||| ||||| ||| ||||||||    
T  9990084 aattaaattaacagaagggatcaaaccgatactttaaataaagttaagggacctaaacataccttttattaattatg-gaccaaaccgat 9989996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 296 - 370
Target Start/End: Complemental strand, 35463691 - 35463617
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattactta 370  Q
    |||||||||||||||| ||||||||||| |||||||| ||||||||||||||| |||||||| ||||||||||||    
T  35463691 aattaaattaacagaagggaccaaaccgttactttaactaaagttaagggaccaaaacagacattttattactta 35463617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 296 - 373
Target Start/End: Original strand, 9990161 - 9990238
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatga 373  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||  ||| |||| ||||||    
T  9990161 aattaaattaacataaaggaccaatccgatactttaaataaagttaagggacctaaacagatctttcattatttatga 9990238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 296 - 396
Target Start/End: Complemental strand, 18968638 - 18968538
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatc 395  Q
    |||||||| |||| || ||||||||||||||||||||||||||||||||||||||||| ||  |||||||  |||||| || ||||| ||| ||||||||    
T  18968638 aattaaatcaacaaaagggaccaaaccgatactttaaataaagttaagggacctaaacggatcttttattgattatgaaaccaaaccaatacttgaaatc 18968539  T
Q  396 a 396  Q
    |    
T  18968538 a 18968538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 296 - 386
Target Start/End: Original strand, 17115557 - 17115647
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgata 386  Q
    |||||||||||||||||||||||||| |||||||| ||| ||||||||||||| ||||  || |||||||||||||| ||| ||| |||||    
T  17115557 aattaaattaacagaaaggaccaaactgatactttcaatcaagttaagggaccaaaacgaaccttttattacttatgggaccaaaacgata 17115647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 296 - 372
Target Start/End: Complemental strand, 18508653 - 18508577
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatg 372  Q
    ||||||||||||||||||||||||||| ||||||| ||||||| ||||| ||| |||  ||| ||||||||||||||    
T  18508653 aattaaattaacagaaaggaccaaaccaatactttcaataaagctaaggaaccaaaatggaccttttattacttatg 18508577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 296 - 396
Target Start/End: Original strand, 36207414 - 36207514
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatc 395  Q
    |||||||||||| |||||||| |||||||||||||||||||| |||| ||| || |||  | ||||||||||||||| ||  |||||| || ||||||||    
T  36207414 aattaaattaaccgaaaggactaaaccgatactttaaataaaattaacggatcttaacgaattttttattacttatgtgatcaaaccggtacttgaaatc 36207513  T
Q  396 a 396  Q
    |    
T  36207514 a 36207514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 296 - 370
Target Start/End: Complemental strand, 14662491 - 14662418
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattactta 370  Q
    ||||||||||| |||| ||||||||||| |||||||||||||||||| ||||| ||||  || ||||||||||||    
T  14662491 aattaaattaatagaagggaccaaaccgttactttaaataaagttaa-ggaccaaaacgaaccttttattactta 14662418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 296 - 348
Target Start/End: Original strand, 8417797 - 8417849
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacc 348  Q
    |||||||||||| |||||||||||||  |||||||||||||| ||||||||||    
T  8417797 aattaaattaactgaaaggaccaaactaatactttaaataaaattaagggacc 8417849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 324 - 396
Target Start/End: Original strand, 18968768 - 18968840
Alignment:
Q  324 atactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatca 396  Q
    |||||||| |||||||||||||| | ||||| || |||||||| ||||| ||  ||||||||| |||||||||    
T  18968768 atactttatataaagttaagggatccaaacataccttttattatttatgggatcaaaccgatacttgaaatca 18968840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 5e-34; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 296 - 394
Target Start/End: Original strand, 49220320 - 49220418
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaat 394  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||| |||||||    
T  49220320 aattaaattaacagaaaggaccaagctgatactttaaataaagttaagggacctaaacagactttttattatttatgggaccaaaccgatacttgaaat 49220418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 296 - 394
Target Start/End: Complemental strand, 52857105 - 52857007
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaat 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||| |||||||||||||| ||| ||||||||| |||||||    
T  52857105 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaaggtatctaaacggaccttttattacttatgggaccaaaccgatacttgaaat 52857007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 296 - 396
Target Start/End: Original strand, 11047216 - 11047316
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatc 395  Q
    ||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||| ||| |||||||||||||| ||| ||||||||| ||||||||    
T  11047216 aattaaattaacagaaatgaccaaactaatactttaaataaagttaagggacctaaacggaccttttattacttatgggaccaaaccgatacttgaaatc 11047315  T
Q  396 a 396  Q
    |    
T  11047316 a 11047316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 296 - 396
Target Start/End: Original strand, 31071152 - 31071252
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatc 395  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||| ||  ||||||||| ||||||||    
T  31071152 aattaaattaacagaaatgaccaaactgatactttaaataaagttaagggacctaaacagaccttttattatttatgggatcaaaccgatacttgaaatc 31071251  T
Q  396 a 396  Q
    |    
T  31071252 a 31071252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 296 - 376
Target Start/End: Original strand, 46453112 - 46453192
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagac 376  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  46453112 aattaaattaacataaaggactaaaccgatactttaaataaagttaagggacctaaacggactttttattacttatgagac 46453192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 296 - 396
Target Start/End: Complemental strand, 49220243 - 49220143
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatc 395  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||| |||||||||||| ||||| ||| ||||||||| || |||||    
T  49220243 aattaaattaacagaaagcaccaaaccgataatttaaataaagttaaaggacctaaacggactttttattatttatgggactaaaccgatacttaaaatc 49220144  T
Q  396 a 396  Q
    |    
T  49220143 a 49220143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 296 - 386
Target Start/End: Original strand, 4953362 - 4953452
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgata 386  Q
    |||||| ||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||| ||| |||||    
T  4953362 aattaagttaacggaaaggaccaaaccgacactttaaataaagttaagggacttaaacagactttttattacttatgggaccaaaacgata 4953452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 296 - 370
Target Start/End: Complemental strand, 26246997 - 26246923
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattactta 370  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  26246997 aattaaattaacagaaaggatcaaaccgatactttaaataaagttaagggacctaaacggacattttattactta 26246923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 295 - 394
Target Start/End: Complemental strand, 26988935 - 26988836
Alignment:
Q  295 aaattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaat 394  Q
    ||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||  ||| |||||||||||||| ||| |||| |||| |||||||    
T  26988935 aaattaaattaactgaagggaccaaacccatactttaaataaagttaagggacctaaaaggacattttattacttatgggacaaaactgatacttgaaat 26988836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 296 - 370
Target Start/End: Original strand, 13301885 - 13301959
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattactta 370  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||  ||||||||||||    
T  13301885 aattaaattaacagaaaggatcaaaccgatactttaaataaagttaagggacctaaacggatcttttattactta 13301959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 296 - 370
Target Start/End: Original strand, 13312541 - 13312615
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattactta 370  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||  ||||||||||||    
T  13312541 aattaaattaacagaaaggatcaaaccgatactttaaataaagttaagggacctaaacggatcttttattactta 13312615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 295 - 372
Target Start/End: Original strand, 24244701 - 24244778
Alignment:
Q  295 aaattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatg 372  Q
    |||||||||||||||||| || |||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||    
T  24244701 aaattaaattaacagaaatgatcaaaccgatactttaaataaagttaagggatctaaacggaccttttattacttatg 24244778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 296 - 396
Target Start/End: Complemental strand, 18734070 - 18733971
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatc 395  Q
    |||||||||||||||||| || |||| ||||||||||||||||||||||||| ||||||||||||||| || ||||| ||| |||| |||| ||||||||    
T  18734070 aattaaattaacagaaagaacgaaactgatactttaaataaagttaagggacttaaacagactttttacta-ttatgggaccaaactgatacttgaaatc 18733972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 296 - 396
Target Start/End: Complemental strand, 28253572 - 28253472
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatc 395  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||  |||||||||||||| || ||| || | |||| ||||||||    
T  28253572 aattaaattaacagaagggaccaaaccgatacttgaaataaagttaagggacttaaacgaactttttattacttttgggaccaatctgatacttgaaatc 28253473  T
Q  396 a 396  Q
    |    
T  28253472 a 28253472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 296 - 396
Target Start/End: Original strand, 28253678 - 28253778
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatc 395  Q
    ||||||||||||||||| || ||||| ||||||||||||||||||||||||| ||| ||||| |||||||| ||||| ||| || |||||| ||||||||    
T  28253678 aattaaattaacagaaatgatcaaactgatactttaaataaagttaagggacttaatcagaccttttattatttatgggaccaatccgatacttgaaatc 28253777  T
Q  396 a 396  Q
    |    
T  28253778 a 28253778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 296 - 386
Target Start/End: Original strand, 26247108 - 26247198
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgata 386  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||| |||| |||| ||| |||||||||||||| ||| ||| |||||    
T  26247108 aattaaattaacagaaaggaccaaactgatactttcaataaagttaagagaccaaaacggaccttttattacttatgggaccaaagcgata 26247198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 296 - 386
Target Start/End: Original strand, 43465050 - 43465140
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgata 386  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||| ||||| |||| ||| |||||||||||||| ||| ||| |||||    
T  43465050 aattaaattaacagaaaggaccaaaccgataatttcaataaagttaatggaccaaaacggacattttattacttatgggaccaaaacgata 43465140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 296 - 372
Target Start/End: Complemental strand, 24244594 - 24244518
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatg 372  Q
    ||||||||||| | ||||||||||||||||||||| ||||||||||||||||| |||||||  ||||||||||||||    
T  24244594 aattaaattaatataaaggaccaaaccgatactttcaataaagttaagggaccaaaacagatcttttattacttatg 24244518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 296 - 386
Target Start/End: Complemental strand, 43464940 - 43464851
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgata 386  Q
    |||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||| | ||| |||||||||||||| ||| ||| |||||    
T  43464940 aattaaattaacagaaaggatcaa-ccgatactttaaatatagttaagggacctaaccggaccttttattacttatgggaccaaagcgata 43464851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 296 - 362
Target Start/End: Original strand, 52857214 - 52857280
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagacttttt 362  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||  |||||||    
T  52857214 aattaaattaacagaagggaccaaaccgttactttaaataaagttaagggacctaaacgaacttttt 52857280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 297 - 396
Target Start/End: Complemental strand, 11047095 - 11046997
Alignment:
Q  297 attaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatca 396  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||  ||||||||  ||| ||||||| |||||| ||| |||||||||  ||||||||    
T  11047095 attaaattaacagaagggaccaaaccgatacttgaaataaagttaa-agacctaaagggaccttttatttcttatgggaccaaaccgatacatgaaatca 11046997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 296 - 366
Target Start/End: Original strand, 6276284 - 6276354
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttatta 366  Q
    |||||||| |||||||| || |||||||||||||| ||||||||||||||||| |||||||| ||||||||    
T  6276284 aattaaatcaacagaaatgatcaaaccgatactttcaataaagttaagggaccaaaacagacattttatta 6276354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 296 - 370
Target Start/End: Complemental strand, 46453004 - 46452930
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattactta 370  Q
    |||||||||||||||| ||||||||| | |||||||||||||||||||||| | |||| ||| ||||||||||||    
T  46453004 aattaaattaacagaagggaccaaactgttactttaaataaagttaagggatcaaaacggaccttttattactta 46452930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 296 - 396
Target Start/End: Complemental strand, 31071077 - 31070978
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatc 395  Q
    |||| |||||||| |||||||||||| ||||||| ||||||||||||||||| ||||| ||  |||||||||||||| ||| |||| |||| || |||||    
T  31071077 aattgaattaacaaaaaggaccaaactgatactt-aaataaagttaagggacttaaacggatcttttattacttatgggaccaaactgatacttaaaatc 31070979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 296 - 371
Target Start/End: Complemental strand, 6276187 - 6276112
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttat 371  Q
    |||||||||||| ||||||| ||||| ||||||||||||||||||  |||| |||||| ||| |||||||||||||    
T  6276187 aattaaattaaccgaaaggatcaaactgatactttaaataaagttttgggatctaaacggaccttttattacttat 6276112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 296 - 370
Target Start/End: Complemental strand, 4953253 - 4953179
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattactta 370  Q
    |||||||||||||||| ||||||||||  |||||||||||||||||||||||| ||   ||| ||||||||||||    
T  4953253 aattaaattaacagaagggaccaaaccattactttaaataaagttaagggaccaaattggaccttttattactta 4953179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 339 - 370
Target Start/End: Original strand, 18734149 - 18734180
Alignment:
Q  339 ttaagggacctaaacagactttttattactta 370  Q
    ||||||||||||||||||||||||||||||||    
T  18734149 ttaagggacctaaacagactttttattactta 18734180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 211
Target Start/End: Complemental strand, 31071168 - 31071126
Alignment:
Q  170 tttctgttaatttaattcaaaaaa-tgttaagtttaggaccaa 211  Q
    ||||||||||||||||||||||||  |||||||||||||||||    
T  31071168 tttctgttaatttaattcaaaaaagcgttaagtttaggaccaa 31071126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 206
Target Start/End: Original strand, 43464922 - 43464962
Alignment:
Q  168 cctttctgttaatttaattc--aaaaaatgttaagtttagg 206  Q
    ||||||||||||||||||||  |||||||||||||||||||    
T  43464922 cctttctgttaatttaattcaaaaaaaatgttaagtttagg 43464962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 7e-33; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 296 - 396
Target Start/End: Complemental strand, 12702056 - 12701956
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatc 395  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||| |||||||||||||| ||| ||||||||| ||||||||    
T  12702056 aattaaattaacagaaaggaccaaaccaatactttaaatgaagttaagggacctaaacggaccttttattacttatgggaccaaaccgatacttgaaatc 12701957  T
Q  396 a 396  Q
    |    
T  12701956 a 12701956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 296 - 386
Target Start/End: Original strand, 36065452 - 36065542
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgata 386  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||| |||||||||||||||||| ||| |||||    
T  36065452 aattaaattaacagaaaggaccaaaccgatactttcaataaagttaagggaccaaaacggaccttttattacttatgagaccaaaacgata 36065542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 296 - 372
Target Start/End: Complemental strand, 16581466 - 16581390
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatg 372  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  16581466 aattaaattaacagaaaggatcaaaccgatactttaaataaagttaagggacctaaacggaccttttattacttatg 16581390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 296 - 373
Target Start/End: Complemental strand, 36065343 - 36065266
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatga 373  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||    
T  36065343 aattaaattaacagaaaggatcaaaccgatactttaaataaagttaagggacctaaacggatcttttattacttatga 36065266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 296 - 396
Target Start/End: Original strand, 12261062 - 12261162
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatc 395  Q
    ||||||||||| |||||||||||| |||| ||||||||||||||||||||| |||||| ||| ||||||| |||||| ||| ||||||||| ||||||||    
T  12261062 aattaaattaaaagaaaggaccaagccgacactttaaataaagttaagggagctaaacggaccttttattgcttatgtgaccaaaccgatacttgaaatc 12261161  T
Q  396 a 396  Q
    |    
T  12261162 a 12261162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 300 - 396
Target Start/End: Original strand, 12702168 - 12702264
Alignment:
Q  300 aaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatca 396  Q
    ||||||||| ||||||||| ||||||| |||||||||||||||||||||||||| ||| |||||||||||||| ||| ||||||||| |||| ||||    
T  12702168 aaattaacaaaaaggaccagaccgatattttaaataaagttaagggacctaaacggaccttttattacttatgggaccaaaccgatacttgatatca 12702264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 296 - 386
Target Start/End: Original strand, 16203681 - 16203771
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgata 386  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||| ||| |||||||||||||| ||| ||| |||||    
T  16203681 aattaaattaacagaaaggatcaaaccgatactttcaataaagttaagggaccaaaacggaccttttattacttatgggaccaaagcgata 16203771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 296 - 386
Target Start/End: Complemental strand, 25945955 - 25945865
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgata 386  Q
    |||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||  |||||||||||||| ||| ||| |||||    
T  25945955 aattaaattaactgaaaggatcaaactgatactttaaataaagttaagggacctaaacagatcttttattacttatgggaccaaagcgata 25945865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 296 - 386
Target Start/End: Original strand, 38978853 - 38978943
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgata 386  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||  |||||||||||| |||| ||| ||| |||||    
T  38978853 aattaaattaacagaaaggaccaaactgatactttaaataaagttaagggacccaaacgaactttttattacatatgggaccaaagcgata 38978943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 296 - 396
Target Start/End: Complemental strand, 21304456 - 21304357
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatc 395  Q
    ||||||||||||||||||||| |||| |||| |||||||||||||||| || ||||||  || |||||||||||||| ||| ||||||||||||||||||    
T  21304456 aattaaattaacagaaaggactaaactgata-tttaaataaagttaagcgatctaaacgaacattttattacttatgggaccaaaccgatatttgaaatc 21304358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 296 - 370
Target Start/End: Original strand, 10373253 - 10373327
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattactta 370  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||  ||||||||||||    
T  10373253 aattaaattaacagaaaggaccaaaccgatactttcaataaagttaagggaccaaaacggatcttttattactta 10373327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 296 - 372
Target Start/End: Original strand, 25946064 - 25946140
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatg 372  Q
    |||||||||||| |||||||||||||| |||||||  |||||||||||||||| |||||||| ||||||||||||||    
T  25946064 aattaaattaaccgaaaggaccaaaccaatactttctataaagttaagggaccaaaacagaccttttattacttatg 25946140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 296 - 375
Target Start/End: Complemental strand, 16203573 - 16203494
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgaga 375  Q
    ||||||||||| ||||| || ||||||||||||||||||||||||||||||| ||||| ||| |||||||||||| ||||    
T  16203573 aattaaattaatagaaatgatcaaaccgatactttaaataaagttaagggacttaaacggaccttttattacttacgaga 16203494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 300 - 396
Target Start/End: Original strand, 2217849 - 2217945
Alignment:
Q  300 aaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatca 396  Q
    ||||||||||||| || ||||  ||||||||||||||||||||||||| ||||| ||| |||||||||||||| ||| |||||  || |||||||||    
T  2217849 aaattaacagaaatgatcaaattgatactttaaataaagttaagggacataaacggacattttattacttatgggaccaaaccattacttgaaatca 2217945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 310 - 364
Target Start/End: Complemental strand, 38978767 - 38978713
Alignment:
Q  310 aaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttat 364  Q
    |||||||||||||| |||||||||||||||||||||||| |||| ||| ||||||    
T  38978767 aaaggaccaaaccgttactttaaataaagttaagggaccaaaacggaccttttat 38978713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 299 - 344
Target Start/End: Complemental strand, 45115074 - 45115029
Alignment:
Q  299 taaattaacagaaaggaccaaaccgatactttaaataaagttaagg 344  Q
    |||||||||||||| || ||||||||||||||||||||||||||||    
T  45115074 taaattaacagaaaagatcaaaccgatactttaaataaagttaagg 45115029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 296 - 396
Target Start/End: Original strand, 3568501 - 3568601
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatc 395  Q
    ||||||| ||||| ||||||||||| | |||||| ||||||||||||   || ||||  ||| |||||||| ||||| ||  ||||||||| ||||||||    
T  3568501 aattaaaataacacaaaggaccaaagccatacttaaaataaagttaataaacttaaatggaccttttattatttatgggatcaaaccgatacttgaaatc 3568600  T
Q  396 a 396  Q
    |    
T  3568601 a 3568601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 296 - 372
Target Start/End: Complemental strand, 10373144 - 10373068
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatg 372  Q
    |||||||| ||||||||||| |||| | |||||||||||| |||||||  || ||||||||  |||||||| |||||    
T  10373144 aattaaatcaacagaaaggatcaaaacaatactttaaatacagttaagccacataaacagatcttttattatttatg 10373068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 199
Target Start/End: Complemental strand, 16203699 - 16203668
Alignment:
Q  168 cctttctgttaatttaattcaaaaaatgttaa 199  Q
    ||||||||||||||||||||||||||||||||    
T  16203699 cctttctgttaatttaattcaaaaaatgttaa 16203668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 206
Target Start/End: Complemental strand, 38978871 - 38978833
Alignment:
Q  168 cctttctgttaatttaattcaaaaaatgttaagtttagg 206  Q
    |||||||||||||||||||||||||| |||| |||||||    
T  38978871 cctttctgttaatttaattcaaaaaaagttaggtttagg 38978833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 206
Target Start/End: Original strand, 16581448 - 16581488
Alignment:
Q  168 cctttctgttaatttaattc--aaaaaatgttaagtttagg 206  Q
    ||||||||||||||||||||  |||||||||||||||||||    
T  16581448 cctttctgttaatttaattcaaaaaaaatgttaagtttagg 16581488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 1e-31; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 296 - 386
Target Start/End: Original strand, 21015170 - 21015260
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgata 386  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||| |||||    
T  21015170 aattaaattaaaagaaaggaccaaaccgatactttaaataaagttaagggacccaaacagactttttattacttatgggaccaaagcgata 21015260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 296 - 396
Target Start/End: Complemental strand, 36194756 - 36194656
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatc 395  Q
    ||||||||||| |||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||| ||||| ||||||||    
T  36194756 aattaaattaatagaaaggatcaaactgatactttaaataaagttaagggatctaaacagactttttattacttatgggaccaaaacgatacttgaaatc 36194657  T
Q  396 a 396  Q
    |    
T  36194656 a 36194656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 296 - 386
Target Start/End: Complemental strand, 10134737 - 10134647
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgata 386  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||| ||| |||||    
T  10134737 aattaaattaacagaaaggatcaaaccgatactttaaataaagttaagggacctaaacggaccttttattacttatgggaccaaagcgata 10134647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 296 - 396
Target Start/End: Original strand, 12654939 - 12655039
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatc 395  Q
    ||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||| ||  |||||||||||||| ||| ||||||||| ||||||||    
T  12654939 aattaaattgacataaaggaccaaacagatactttaaataaagttaagggacctaaacggaacttttattacttatgggaccaaaccgatacttgaaatc 12655038  T
Q  396 a 396  Q
    |    
T  12655039 a 12655039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 296 - 386
Target Start/End: Original strand, 10134846 - 10134936
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgata 386  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||| |||||||||||||| ||| ||| |||||    
T  10134846 aattaaattaacagaaaggaccaaaccgatactttcaataaagttaagggaccaaaacggaccttttattacttatgggaccaaagcgata 10134936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 296 - 396
Target Start/End: Original strand, 13557378 - 13557477
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatc 395  Q
    ||||||||||||| ||| |||||||| |||||||||||| |||||||||||||||||| ||| |||||||||||||| ||| ||||||||| ||||||||    
T  13557378 aattaaattaacataaaagaccaaac-gatactttaaatgaagttaagggacctaaacggaccttttattacttatgggaccaaaccgatacttgaaatc 13557476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 296 - 376
Target Start/End: Complemental strand, 18847495 - 18847415
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagac 376  Q
    ||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||    
T  18847495 aattaaattaacataagggaccaaaccgatactttaaataaagttaagggacataaacaaaccttttattacttatgagac 18847415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 296 - 396
Target Start/End: Complemental strand, 31933402 - 31933302
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatc 395  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||| ||||| |||| |||||||||||||| ||| ||||| ||| || |||||    
T  31933402 aattaaattaacagaaaggaccaaagtgatactttaaataaagttaagggatctaaatagaccttttattacttatgggaccaaaccaatacttaaaatc 31933303  T
Q  396 a 396  Q
    |    
T  31933302 a 31933302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 299 - 396
Target Start/End: Original strand, 36194868 - 36194965
Alignment:
Q  299 taaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatca 396  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||| || |||| |||| ||||| ||| ||||||||| || ||||||    
T  36194868 taaattaacagaaaggaccaaactgatactttaaataaagttaaaggacctaaacggatttttgattatttatgggaccaaaccgatacttaaaatca 36194965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 296 - 396
Target Start/End: Original strand, 31933509 - 31933609
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatc 395  Q
    ||||||||||| |||||||||||||  |||||||||||||||||||  ||| |||||  |||||||||||||||||| ||| ||||||||| ||||||||    
T  31933509 aattaaattaagagaaaggaccaaattgatactttaaataaagttagcggatctaaatggactttttattacttatgggaccaaaccgatacttgaaatc 31933608  T
Q  396 a 396  Q
    |    
T  31933609 a 31933609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 296 - 372
Target Start/End: Complemental strand, 40832265 - 40832189
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatg 372  Q
    ||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||    
T  40832265 aattaaattaacataaaggatcaaaccgatactttaaataaaattaagggacctaaacggaccttttattacttatg 40832189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 296 - 394
Target Start/End: Complemental strand, 12654830 - 12654732
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaat 394  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| | |||||  ||| |||||||| ||||| ||| ||||||| | |||||||    
T  12654830 aattaaattaacagaaaggaccaaactgatactttaaataaagttaaggaaactaaatggaccttttattatttatgggaccaaaccgacacttgaaat 12654732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 296 - 370
Target Start/End: Complemental strand, 21015061 - 21014987
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattactta 370  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||| || ||||||||||||    
T  21015061 aattaaattaacagaagggaccaaaccgttactttaaataaagttaagggaccaaaacaaaccttttattactta 21014987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 296 - 396
Target Start/End: Original strand, 18847572 - 18847672
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatc 395  Q
    |||| |||||||| || ||||||||||| ||| ||||| ||||||||||||| |||| ||||||||||||||||||| ||| |||| |||| ||||||||    
T  18847572 aattgaattaacataagggaccaaaccgttaccttaaacaaagttaagggacttaaatagactttttattacttatgggacaaaactgatacttgaaatc 18847671  T
Q  396 a 396  Q
    |    
T  18847672 a 18847672  T

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Target: chr8; HSP #15
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 296 - 386
Target Start/End: Original strand, 40832344 - 40832434
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgata 386  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||  | |||| ||  |||||||||||||| ||| ||| |||||    
T  40832344 aattaaattaacagaaaggaccaaaccgatacttttaataaagttaaggggacaaaacggatcttttattacttatgggaccaaagcgata 40832434  T

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Target: chr8; HSP #16
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 296 - 396
Target Start/End: Complemental strand, 13557269 - 13557169
Alignment:
Q  296 aattaaattaacagaaa-ggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaat 394  Q
    ||||||||||||| ||| ||| || ||||||||||||| |||||||| |||||||||||  || |||||||||||||| ||| ||||||||| |||||||    
T  13557269 aattaaattaacaaaaaaggatcagaccgatactttaa-taaagttatgggacctaaacgaaccttttattacttatgggaccaaaccgatacttgaaat 13557171  T
Q  395 ca 396  Q
    ||    
T  13557170 ca 13557169  T

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Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 322 - 394
Target Start/End: Original strand, 15271767 - 15271839
Alignment:
Q  322 cgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaat 394  Q
    ||||| |||||||||| ||| | |||||||| ||| ||||||||||||||| ||| ||| |||||||||||||    
T  15271767 cgatattttaaataaaattaggagacctaaatagattttttattacttatgtgaccaaatcgatatttgaaat 15271839  T

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Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 206
Target Start/End: Original strand, 31933384 - 31933422
Alignment:
Q  168 cctttctgttaatttaattcaaaaaatgttaagtttagg 206  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  31933384 cctttctgttaatttaattaaaaaaatgttaagtttagg 31933422  T

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Target: scaffold0220 (Bit Score: 67; Significance: 3e-29; HSPs: 2)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 296 - 386
Target Start/End: Complemental strand, 26092 - 26002
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgata 386  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||| ||| |||||    
T  26092 aattaaattaacagaaaggatcaaaccgatactttaaataaagttaagggacttaaacaaactttttattacttatgggaccaaagcgata 26002  T

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Target: scaffold0220; HSP #2
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 296 - 386
Target Start/End: Original strand, 26201 - 26291
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgata 386  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||| |||||||||||||| ||| ||| |||||    
T  26201 aattaaattaacagaaaggaccaaaccgatactttcaataaagttaagggaccaaaacggaccttttattacttatgggaccaaaacgata 26291  T

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Target: chr6 (Bit Score: 61; Significance: 1e-25; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 296 - 396
Target Start/End: Original strand, 1211633 - 1211733
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatc 395  Q
    ||||||||||||| || |||||| ||| ||||||||||||||||||||||| |||||||||  |||||||||||||||||| |||| |||| ||||||||    
T  1211633 aattaaattaacaaaatggaccataccaatactttaaataaagttaagggatctaaacagatcttttattacttatgagaccaaacagatacttgaaatc 1211732  T
Q  396 a 396  Q
    |    
T  1211733 a 1211733  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 296 - 385
Target Start/End: Original strand, 959246 - 959335
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgat 385  Q
    ||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||  || |||||||||||||| ||| ||| ||||    
T  959246 aattaaattaacagaaaggattaaactgatactttaaataaagttaagggacctaaacgaaccttttattacttatgggaccaaagcgat 959335  T

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Target: chr6; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 296 - 386
Target Start/End: Complemental strand, 959138 - 959048
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgata 386  Q
    |||||||| || |||||||| |||||||||||||| ||||||||||||||||| |||| ||| |||||||||||||| ||| ||| |||||    
T  959138 aattaaatcaagagaaaggatcaaaccgatactttcaataaagttaagggaccaaaacggaccttttattacttatgggactaaagcgata 959048  T

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Target: chr6; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 296 - 372
Target Start/End: Complemental strand, 1211523 - 1211447
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatg 372  Q
    ||||||||||||| || ||||||||||||||||||||||||| ||||  ||||||||| ||| ||||||||| ||||    
T  1211523 aattaaattaacaaaagggaccaaaccgatactttaaataaaattaaatgacctaaacggaccttttattacatatg 1211447  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 206
Target Start/End: Complemental strand, 959264 - 959226
Alignment:
Q  168 cctttctgttaatttaattcaaaaaatgttaagtttagg 206  Q
    ||||||||||||||||||| |||||| ||||||||||||    
T  959264 cctttctgttaatttaattaaaaaaacgttaagtttagg 959226  T

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Target: scaffold0130 (Bit Score: 46; Significance: 9e-17; HSPs: 1)
Name: scaffold0130
Description:

Target: scaffold0130; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 296 - 396
Target Start/End: Original strand, 25490 - 25591
Alignment:
Q  296 aattaaattaacagaaaggaccaaaccgatactttaaataaagtt-aagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaat 394  Q
    |||||||||||||||| ||| ||||||||||||||||| |||||| || |||||||||| ||   ||||||||||||||||  |||| |||| |||||||    
T  25490 aattaaattaacagaagggatcaaaccgatactttaaacaaagttaaaaggacctaaacggatcatttattacttatgagatcaaactgatacttgaaat 25589  T
Q  395 ca 396  Q
    ||    
T  25590 ca 25591  T

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Target: scaffold0009 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 298 - 372
Target Start/End: Original strand, 233672 - 233746
Alignment:
Q  298 ttaaattaacagaaaggaccaaaccgatactttaaataaagttaagggacctaaacagactttttattacttatg 372  Q
    ||||||||| |||||  ||||||| |||||||||||||||||||||||| |||||| ||  ||||||||||||||    
T  233672 ttaaattaatagaaaaaaccaaactgatactttaaataaagttaagggatctaaacggatcttttattacttatg 233746  T

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Target: scaffold0009; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 328 - 396
Target Start/End: Complemental strand, 233630 - 233562
Alignment:
Q  328 tttaaataaagttaagggacctaaacagactttttattacttatgagacgaaaccgatatttgaaatca 396  Q
    ||||||||||||||||||| |||||| ||  |||||||||||||   || ||||||||| |||||||||    
T  233630 tttaaataaagttaagggatctaaacggatcttttattacttatagaactaaaccgatacttgaaatca 233562  T

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