View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4848-Insertion-2 (Length: 368)
Name: NF4848-Insertion-2
Description: NF4848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4848-Insertion-2 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 8 - 368
Target Start/End: Complemental strand, 38983276 - 38982914
Alignment:
| Q |
8 |
tacctaagcctgaagcaatctcaaacagggttgtcttcctcgaatattcttggggtaagtgcatcaacctgacccaaatttgagcatgagtttgcatttg |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38983276 |
tacctaagcctgaagcaatctcaaacagggttgtcttcctctaatattcttggggtaagtgcatcaacctgacccaaatttgagcatgagtttgcatttg |
38983177 |
T |
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| Q |
108 |
agcttgaggcttgaaatcttttgtccaacagtagaaacgaaggaacccaggtttcatattcaccacccttaatgcccaaactc--tgcatatcttcaatt |
205 |
Q |
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| T |
38983176 |
agcttgaggcttgaaatcttttgtccagcagtagaaacgaaggaacccaggtttcatattcaccaccctcaatgcccaaactctgtgcatgtcttcaatt |
38983077 |
T |
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| Q |
206 |
gaactgaagttaaactcgaaaaaacccttatcaagaggtgtaagattccaattgtgcagatcaagccacaatccgtaaagcttatgtttcaacgaaaatg |
305 |
Q |
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| T |
38983076 |
gaactgaagttaaagtcgaaaaaacccttaccaagaggtgtaagattccaattgtgcatatcaggccacaatccggaaagcttctgtttctatgaaagtg |
38982977 |
T |
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| Q |
306 |
ttgtcaatggaggatcccccttgtgtagagcgactctgccatggaggttacacttacacgcag |
368 |
Q |
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| T |
38982976 |
ttgtcaatggaggatcccccttgtgcagagcgactctgccatggaggttacacttacacgcag |
38982914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 50 - 101
Target Start/End: Complemental strand, 38834936 - 38834885
Alignment:
| Q |
50 |
aatattcttggggtaagtgcatcaacctgacccaaatttgagcatgagtttg |
101 |
Q |
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| T |
38834936 |
aatattcctggggtaggtgcatcagccggacccaaatttgcgcatgagtttg |
38834885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 24 - 154
Target Start/End: Complemental strand, 51523524 - 51523394
Alignment:
| Q |
24 |
aatctcaaacagggttgtcttcctcgaatattcttggggtaagtgcatcaacctgacccaaatttgagcatgagtttgcatttgagcttgaggcttgaaa |
123 |
Q |
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| T |
51523524 |
aatctcaaacaaagttgtttttctccaatattcttgaggtaaatgcatgagcctaacccaaatttgggcatgagtttgcacttgagcttgaggcttgaaa |
51523425 |
T |
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| Q |
124 |
tcttttgtccaacagtagaaacgaaggaacc |
154 |
Q |
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| T |
51523424 |
cccctagtccaacaggagaaacgaagaaacc |
51523394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 276
Target Start/End: Complemental strand, 44771954 - 44771695
Alignment:
| Q |
19 |
gaagcaatctcaaacagggttgtcttcctcgaatattcttggggtaagtgcatcaacctgacccaaatttgagcatgagtttgcatttgagcttgaggct |
118 |
Q |
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| T |
44771954 |
gaagcaatctcatagagagttttcctcctccagtattcttggggtaaatgcataagacacacccaaatttgtgcatgtgtttgcaccagagcttgaggtt |
44771855 |
T |
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| Q |
119 |
tgaaatcttttgtccaacagtagaaacgaaggaacccaggtttcatattcaccacccttaatgcccaaactct--gcatatcttcaattgaactgaagtt |
216 |
Q |
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| T |
44771854 |
tgaagtctctggtccaacaatagaagcgaagaaacccaggcttgagattgatcacccctaacgcccaaattgtgcgcatatcatcaatggaactgaaatt |
44771755 |
T |
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| Q |
217 |
aaactcgaaaaaacccttatcaagaggtgtaagattccaattgtgcagatcaagccacaa |
276 |
Q |
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|||||||| |||||||| |||| || || || |||||||| |||| || | ||||||| |
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| T |
44771754 |
gaactcgaagaaaccctttccaagcggagtgaggttccaattttgcaaattaggccacaa |
44771695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 169
Target Start/End: Original strand, 24979166 - 24979252
Alignment:
| Q |
83 |
aaatttgagcatgagtttgcatttgagcttgaggcttgaaatcttttgtccaacagtagaaacgaaggaacccaggtttcatattca |
169 |
Q |
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|||| |||||||| ||||||| ||||||| |||||||||||| | ||||||||||||||| | || ||||||||||||||||||| |
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| T |
24979166 |
aaatctgagcatgtgtttgcacaagagcttggggcttgaaatctctagtccaacagtagaaatgtagaaacccaggtttcatattca |
24979252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 22753969 - 22754029
Alignment:
| Q |
41 |
tcttcctcgaatattcttggggtaagtgcatcaacctgacccaaatttgagcatgagtttg |
101 |
Q |
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| T |
22753969 |
tctttctccaatattcctgaggtaaatgcatcaatcggacccaaatttgcgcatgagtttg |
22754029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 122
Target Start/End: Original strand, 28102994 - 28103096
Alignment:
| Q |
20 |
aagcaatctcaaacagggttgtcttcctcgaatattcttggggtaagtgcatcaacctgacccaaatttgagcatgagtttgcatttgagcttgaggctt |
119 |
Q |
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||||||||||||| |||||| |||||||| |||||||||| || || ||||| | || |||||||| |||||||| ||| ||| ||||||||| || || |
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| T |
28102994 |
aagcaatctcaaaaagggttctcttcctccaatattcttgaggaaaatgcataagtctaacccaaatctgagcatgggttcgcacttgagcttggggttt |
28103093 |
T |
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| Q |
120 |
gaa |
122 |
Q |
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||| |
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| T |
28103094 |
gaa |
28103096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 173
Target Start/End: Complemental strand, 36905007 - 36904854
Alignment:
| Q |
20 |
aagcaatctcaaacagggttgtcttcctcgaatattcttggggtaagtgcatcaacctgacccaaatttgagcatgagtttgcatttgagcttgaggctt |
119 |
Q |
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||||||||||||| |||| ||||||||| |||||||||| || || ||||| | | |||||||| |||||||| ||||||| |||||||| || || |
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| T |
36905007 |
aagcaatctcaaaaagggccgtcttcctccaatattcttgaggcaaatgcataagtataacccaaatctgagcatgggtttgcacctgagcttggggttt |
36904908 |
T |
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| Q |
120 |
gaaatcttttgtccaacagtagaaacgaaggaacccaggtttcatattcaccac |
173 |
Q |
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||| | ||| |||||| |||||||||||| ||| ||||||| ||| ||||| |
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| T |
36904907 |
gaagccccttgaccaacaagagaaacgaaggatccctggtttcagattgaccac |
36904854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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