View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4848-Insertion-3 (Length: 264)

Name: NF4848-Insertion-3
Description: NF4848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4848-Insertion-3
NF4848-Insertion-3
[»] chr8 (8 HSPs)
chr8 (41-264)||(43318443-43318666)
chr8 (7-264)||(478437-478693)
chr8 (7-264)||(7126772-7127029)
chr8 (7-264)||(40589096-40589353)
chr8 (7-177)||(8451504-8451674)
chr8 (141-264)||(21371553-21371676)
chr8 (7-128)||(23853632-23853750)
chr8 (16-83)||(42898940-42899007)
[»] chr2 (7 HSPs)
chr2 (7-264)||(34696283-34696540)
chr2 (7-264)||(34718695-34718952)
chr2 (13-264)||(39826242-39826493)
chr2 (10-264)||(88108-88362)
chr2 (7-264)||(18345855-18346111)
chr2 (7-241)||(12131019-12131253)
chr2 (142-257)||(20515077-20515192)
[»] chr1 (6 HSPs)
chr1 (7-264)||(36733242-36733499)
chr1 (7-264)||(5608888-5609145)
chr1 (7-264)||(51112864-51113121)
chr1 (7-125)||(44526953-44527071)
chr1 (7-67)||(4394905-4394965)
chr1 (7-62)||(24538260-24538315)
[»] chr5 (14 HSPs)
chr5 (7-264)||(22767638-22767895)
chr5 (9-264)||(12659893-12660148)
chr5 (7-258)||(30223180-30223431)
chr5 (7-264)||(27533288-27533545)
chr5 (7-264)||(25730390-25730647)
chr5 (7-260)||(20204509-20204761)
chr5 (7-264)||(8387630-8387892)
chr5 (7-175)||(15989130-15989298)
chr5 (12-175)||(34653977-34654140)
chr5 (7-205)||(41941118-41941313)
chr5 (7-264)||(27291992-27292252)
chr5 (7-95)||(4267829-4267917)
chr5 (9-99)||(16074451-16074540)
chr5 (159-264)||(26295907-26296012)
[»] chr4 (16 HSPs)
chr4 (7-263)||(37246237-37246494)
chr4 (7-264)||(28425744-28426001)
chr4 (7-264)||(51259911-51260167)
chr4 (7-264)||(28538166-28538423)
chr4 (10-264)||(55734558-55734812)
chr4 (7-264)||(32577427-32577669)
chr4 (7-264)||(29656046-29656303)
chr4 (7-207)||(51735353-51735553)
chr4 (10-264)||(18442528-18442782)
chr4 (7-264)||(2064402-2064659)
chr4 (7-177)||(56065265-56065435)
chr4 (7-264)||(49950872-49951119)
chr4 (7-163)||(49119768-49119923)
chr4 (158-264)||(26422761-26422867)
chr4 (10-77)||(21321263-21321330)
chr4 (174-264)||(56063551-56063641)
[»] chr7 (9 HSPs)
chr7 (10-264)||(9328985-9329239)
chr7 (7-264)||(22288790-22289047)
chr7 (7-201)||(16731545-16731739)
chr7 (7-201)||(17709679-17709873)
chr7 (7-264)||(1581164-1581421)
chr7 (7-264)||(16098032-16098289)
chr7 (7-188)||(29201330-29201513)
chr7 (13-264)||(17876962-17877217)
chr7 (6-130)||(11746021-11746145)
[»] chr6 (8 HSPs)
chr6 (10-264)||(30802354-30802608)
chr6 (7-258)||(15606382-15606633)
chr6 (7-264)||(29368417-29368673)
chr6 (7-257)||(19364326-19364576)
chr6 (7-188)||(14679783-14679965)
chr6 (17-264)||(11732041-11732283)
chr6 (7-108)||(28106844-28106945)
chr6 (123-264)||(30803042-30803182)
[»] chr3 (6 HSPs)
chr3 (7-188)||(53496669-53496850)
chr3 (21-264)||(55199069-55199312)
chr3 (9-166)||(1070659-1070816)
chr3 (7-182)||(36310877-36311050)
chr3 (9-104)||(42340659-42340754)
chr3 (213-264)||(53496606-53496657)


Alignment Details
Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 41 - 264
Target Start/End: Original strand, 43318443 - 43318666
Alignment:
Q  41 tccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaatttgctagagaagtaaagccacccgaccagaaat 140  Q
    |||||||||||||| |||||||||||| ||| ||||| |||||||||||||||| |||||| ||||||||| | ||||||||| ||||||||||||||||    
T  43318443 tccttccaatgcttcttgaagtatgatgagcatcatttcaaatgatatcattacttgcagcacaaatttgccaaagaagtaaaaccacccgaccagaaat 43318542  T
Q  141 gtctcggctttctgaataacatatgtcaaaaacaaaatctgccaaactgctctcatttccaactcgcgtatacagcacagacgaaagtcctgcccaatac 240  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  43318543 gtctcggctttctgaacaacatatgtcaaaaacaaaatctgccaaactgctctcatttccaactcgcgtatgcagcacagacgaaagtcctgcccaatac 43318642  T
Q  241 caactttcacgcgccaccgtacaa 264  Q
    ||||||||||||||||||||||||    
T  43318643 caactttcacgcgccaccgtacaa 43318666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 7 - 264
Target Start/End: Original strand, 478437 - 478693
Alignment:
Q  7 acctcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaa 106  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  478437 acctcttgccattgctgccatgcatctagtgccgtccttccaatgcttgttgaagtatgatgagcgtcattccaaatgatatcattacgtgcaacccaaa 478536  T
Q  107 tttgctagagaagtaaagccacccgaccagaaatgtctcggctttctgaataacatatgtcaaaaacaaaatctgccaaactgctctcatttccaactcg 206  Q
    ||| | || ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||| ||||||||| |    
T  478537 ttttccagtgaagtaaagccacccgaccagaaatgtctcggctttctgaacaacatatatcaaaaacaaaatctgccaaactactctc-tttccaacttg 478635  T
Q  207 cgtatacagcacagacgaaagtcctgcccaataccaactttcacgcgccaccgtacaa 264  Q
    ||||| |||||| ||||| |||  |||||||||||||||||||||  ||||| |||||    
T  478636 cgtatgcagcacggacgagagttatgcccaataccaactttcacgtaccaccatacaa 478693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 7 - 264
Target Start/End: Complemental strand, 7127029 - 7126772
Alignment:
Q  7 acctcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaa 106  Q
    ||||| |||||||||||||||||||| || |  |||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||    
T  7127029 acctcatgccattgctgccatgcatccagagctgtccttccaatgcttgttgaagtatgatgagtgtcattccaaatgacatcattacgtgcagcccaaa 7126930  T
Q  107 tttgctagagaagtaaagccacccgaccagaaatgtctcggctttctgaataacatatgtcaaaaacaaaatctgccaaactgctctcatttccaactcg 206  Q
    ||||| | ||||||||| |||||||||||  ||||||||||| ||||||  ||||||||||||||||||||| ||||||||| |||| | ||||||||||    
T  7126929 tttgccaaagaagtaaaaccacccgaccatcaatgtctcggccttctgagcaacatatgtcaaaaacaaaatatgccaaactactctaagttccaactcg 7126830  T
Q  207 cgtatacagcacagacgaaagtcctgcccaataccaactttcacgcgccaccgtacaa 264  Q
    ||| | || ||||| ||||||||||| |||||||||||||||||| ||||||||||||    
T  7126829 cgtttgcaacacagtcgaaagtcctgtccaataccaactttcacgtgccaccgtacaa 7126772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 7 - 264
Target Start/End: Original strand, 40589096 - 40589353
Alignment:
Q  7 acctcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaa 106  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||| ||||||||||||| ||||||    
T  40589096 acctcttgccattgttgccatgcatctagtgtcgtcctcccaatgcttgttgaagtatgatgagcatcattccaaatgacatcattacgtgcaacccaaa 40589195  T
Q  107 tttgctagagaagtaaagccacccgaccagaaatgtctcggctttctgaataacatatgtcaaaaacaaaatctgccaaactgctctcatttccaactcg 206  Q
    ||||| | |||||||||||||||||||||| || |||||| |||||||||  |||||| ||||||| ||||||||| ||||| ||| || ||||||||||    
T  40589196 tttgccaaagaagtaaagccacccgaccagcaacgtctcgactttctgaacgacatatatcaaaaataaaatctgcaaaactactcacagttccaactcg 40589295  T
Q  207 cgtatacagcacagacgaaagtcctgcccaataccaactttcacgcgccaccgtacaa 264  Q
     |  | | |||||| |||||||||| ||||||||||||| ||| ||||||||||||||    
T  40589296 tgattgccgcacagtcgaaagtcctacccaataccaactctcatgcgccaccgtacaa 40589353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 7 - 177
Target Start/End: Original strand, 8451504 - 8451674
Alignment:
Q  7 acctcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaa 106  Q
    |||||||||||||| |||||||| |||||||  || ||||  |||| |||||||||||||| | | ||||||||||| | ||||||||||||||||||||    
T  8451504 acctcttgccattgttgccatgcctctagtgctgttcttctgatgcctgttgaagtatgatgaacatcattccaaataacatcattacgtgcagcccaaa 8451603  T
Q  107 tttgctagagaagtaaagccacccgaccagaaatgtctcggctttctgaataacatatgtcaaaaacaaaa 177  Q
    ||||| | |||||||||||||||||||||| || |||||||||||||||| ||||||| ||||||| ||||    
T  8451604 tttgccaaagaagtaaagccacccgaccagcaacgtctcggctttctgaacaacatatatcaaaaaaaaaa 8451674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 141 - 264
Target Start/End: Original strand, 21371553 - 21371676
Alignment:
Q  141 gtctcggctttctgaataacatatgtcaaaaacaaaatctgccaaactgctctcatttccaactcgcgtatacagcacagacgaaagtcctgcccaatac 240  Q
    |||||| ||||||||| ||| ||||||||||| |||||||||||||||||||||| ||||||||||||| | |||||||| |||||||||||||||||||    
T  21371553 gtctcgactttctgaacaacttatgtcaaaaataaaatctgccaaactgctctcagttccaactcgcgtttgcagcacagtcgaaagtcctgcccaatac 21371652  T
Q  241 caactttcacgcgccaccgtacaa 264  Q
    ||||| ||||||||||| ||||||    
T  21371653 caactctcacgcgccactgtacaa 21371676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 128
Target Start/End: Complemental strand, 23853750 - 23853632
Alignment:
Q  7 acctcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaa 106  Q
    |||||||||||||| || ||||||| ||||||  | || |||||    |||||||| |||| ||| ||||||||||||| || |||||||||||||||||    
T  23853750 acctcttgccattgttgtcatgcatttagtgtttttctcccaatc---gttgaagtgtgatgagcatcattccaaatgacattattacgtgcagcccaaa 23853654  T
Q  107 tttgctagagaagtaaagccac 128  Q
    |||| || |||||| |||||||    
T  23853653 tttggtaaagaagttaagccac 23853632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 42899007 - 42898940
Alignment:
Q  16 cattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaat 83  Q
    ||||||||||||||||||||||||||||| |||||||| ||||| ||||||| | |||||||| ||||    
T  42899007 cattgctgccatgcatctagtgtcgtcctcccaatgctcgttgatgtatgatgaacgtcattcgaaat 42898940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 7 - 264
Target Start/End: Original strand, 34696283 - 34696540
Alignment:
Q  7 acctcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaa 106  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||| |||||||| |||||||||||    
T  34696283 acctcttgccattgttgccatgcatctagtgttgtccttccaatgcttgttgaagtatgatgaacgtcattccaaatgacatcattacttgcagcccaaa 34696382  T
Q  107 tttgctagagaagtaaagccacccgaccagaaatgtctcggctttctgaataacatatgtcaaaaacaaaatctgccaaactgctctcatttccaactcg 206  Q
    ||||| | ||||||||||||||||||| || ||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||| ||||||||||    
T  34696383 tttgccaaagaagtaaagccacccgactagcaatgtctcggctttctgaacaacatatatcaaaagcaaaatctgccaaactgctctcagttccaactcg 34696482  T
Q  207 cgtatacagcacagacgaaagtcctgcccaataccaactttcacgcgccaccgtacaa 264  Q
    ||| | ||||||||  ||||| ||||||||||||||||| ||||||||||||||||||    
T  34696483 cgttttcagcacagttgaaagccctgcccaataccaactctcacgcgccaccgtacaa 34696540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 7 - 264
Target Start/End: Original strand, 34718695 - 34718952
Alignment:
Q  7 acctcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaa 106  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||| |||||||| |||||||||||    
T  34718695 acctcttgccattgttgccatgcatctagtgttgtccttccaatgcttgttgaagtatgatgaacgtcattccaaatgacatcattacttgcagcccaaa 34718794  T
Q  107 tttgctagagaagtaaagccacccgaccagaaatgtctcggctttctgaataacatatgtcaaaaacaaaatctgccaaactgctctcatttccaactcg 206  Q
    ||||| | ||||||||||||||||||| || ||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||| ||||||||||    
T  34718795 tttgccaaagaagtaaagccacccgactagcaatgtctcggctttctgaacaacatatatcaaaagcaaaatctgccaaactgctctcagttccaactcg 34718894  T
Q  207 cgtatacagcacagacgaaagtcctgcccaataccaactttcacgcgccaccgtacaa 264  Q
    ||| | ||||||||  ||||| ||||||||||||||||| ||||||||||||||||||    
T  34718895 cgttttcagcacagttgaaagccctgcccaataccaactctcacgcgccaccgtacaa 34718952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 13 - 264
Target Start/End: Original strand, 39826242 - 39826493
Alignment:
Q  13 tgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaatttgct 112  Q
    |||||||||||||||||||||| ||| ||||||||||||| | |||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||     
T  39826242 tgccattgctgccatgcatctaatgttgtccttccaatgccttttgaagtatgatgagcgtcattccaaatgacatcattacgagcagcccaaatttgcc 39826341  T
Q  113 agagaagtaaagccacccgaccagaaatgtctcggctttctgaataacatatgtcaaaaacaaaatctgccaaactgctctcatttccaactcgcgtata 212  Q
    | |||||||||||||| ||||||| | ||||||||||||||||| |||||||||||||||||||||||  ||| | ||||||| ||||||||||||| |     
T  39826342 aaagaagtaaagccactcgaccagcagtgtctcggctttctgaacaacatatgtcaaaaacaaaatctaacaagcggctctcagttccaactcgcgtttg 39826441  T
Q  213 cagcacagacgaaagtcctgcccaataccaactttcacgcgccaccgtacaa 264  Q
     |||||||  |||||||||||||||||||||||||||||||| | |||||||    
T  39826442 tagcacagttgaaagtcctgcccaataccaactttcacgcgcaatcgtacaa 39826493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 10 - 264
Target Start/End: Complemental strand, 88362 - 88108
Alignment:
Q  10 tcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaattt 109  Q
    ||||||||||| || |||||||||||||||||||| |||||||| |||||  |||||| |||||||||||||||| ||||||||||||||||||||||||    
T  88362 tcttgccattgttgtcatgcatctagtgtcgtcctcccaatgctcgttgatctatgatgagcgtcattccaaatggtatcattacgtgcagcccaaattt 88263  T
Q  110 gctagagaagtaaagccacccgaccagaaatgtctcggctttctgaataacatatgtcaaaaacaaaatctgccaaactgctctcatttccaactcgcgt 209  Q
     | | |||||| ||||||||||||||| |||||||||||||||| |   |||||| ||||||||||||||||||||||||||| || ||||||||||||     
T  88262 tccaaagaagtgaagccacccgaccagcaatgtctcggctttctaagcgacatatatcaaaaacaaaatctgccaaactgctcacagttccaactcgcga 88163  T
Q  210 atacagcacagacgaaagtcctgcccaataccaactttcacgcgccaccgtacaa 264  Q
     | | |||||  |||||||||||||||||||||||| ||||  ||||||||||||    
T  88162 ttgccgcacaatcgaaagtcctgcccaataccaactctcacatgccaccgtacaa 88108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 7 - 264
Target Start/End: Original strand, 18345855 - 18346111
Alignment:
Q  7 acctcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaa 106  Q
    ||||||||||||| ||||||||||| |||||| |||||  ||||||| |||||||| |||| | | ||||||||||||| ||||||||||||||||||||    
T  18345855 acctcttgccattactgccatgcatttagtgttgtcctcgcaatgctcgttgaagtgtgatgaacatcattccaaatgacatcattacgtgcagcccaaa 18345954  T
Q  107 tttgctagagaagtaaagccacccgaccagaaatgtctcggctttctgaataacatatgtcaaaaacaaaatctgccaaactgctctcatttccaactcg 206  Q
    ||||| | ||||||||||||| |||||||| |||||||||||||||| ||  |||||| |||||||||||||||  |||||||||| || |||||||||     
T  18345955 tttgccaaagaagtaaagcca-ccgaccagcaatgtctcggctttctaaacgacatatatcaaaaacaaaatctatcaaactgctcacagttccaactca 18346053  T
Q  207 cgtatacagcacagacgaaagtcctgcccaataccaactttcacgcgccaccgtacaa 264  Q
    ||  | |||||||| |||||| ||||||||||||||||| |||||||| |||||||||    
T  18346054 cggttgcagcacagtcgaaagccctgcccaataccaactctcacgcgctaccgtacaa 18346111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 7 - 241
Target Start/End: Original strand, 12131019 - 12131253
Alignment:
Q  7 acctcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaa 106  Q
    |||||||||||||| |||||||||| |||||| |||||  |||||||  ||||||||||||  |||||||| ||||||| ||||||||||||||||||||    
T  12131019 acctcttgccattgttgccatgcatatagtgttgtcctcacaatgctcattgaagtatgatgtgcgtcatttcaaatgacatcattacgtgcagcccaaa 12131118  T
Q  107 tttgctagagaagtaaagccacccgaccagaaatgtctcggctttctgaataacatatgtcaaaaacaaaatctgccaaactgctctcatttccaactcg 206  Q
    ||||| | |||||||||| || |||||||  ||| ||| | |||||||||  |||||| ||||||| |||||||| |||||||||| || ||||||| ||    
T  12131119 tttgccaaagaagtaaagtcatccgaccaacaatatcttgactttctgaacgacatatatcaaaaataaaatctgtcaaactgctcacagttccaacacg 12131218  T
Q  207 cgtatacagcacagacgaaagtcctgcccaatacc 241  Q
    ||  | ||||||| || |||| |||||||||||||    
T  12131219 cggttgcagcacacacaaaagccctgcccaatacc 12131253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 142 - 257
Target Start/End: Complemental strand, 20515192 - 20515077
Alignment:
Q  142 tctcggctttctgaataacatatgtcaaaaacaaaatctgccaaactgctctcatttccaactcgcgtatacagcacagacgaaagtcctgcccaatacc 241  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||  ||| | ||||||||||||| | ||||||||  |||||||||||| ||||||    
T  20515192 tctcgactttctgaacaacatatgtcaaaaacaaaatctgccaaactagtcttagttccaactcgcgtttgcagcacagttgaaagtcctgccaaatacc 20515093  T
Q  242 aactttcacgcgccac 257  Q
    |||| || ||||||||    
T  20515092 aactctcccgcgccac 20515077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 7 - 264
Target Start/End: Complemental strand, 36733499 - 36733242
Alignment:
Q  7 acctcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaa 106  Q
    |||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||| | ||||||||||||||| ||||||||||||||||||||    
T  36733499 acctcttgccattgctgccatgcatctagtgttgtccttccgatgtttgttgaagtatgatgaacgtcattccaaatgacatcattacgtgcagcccaaa 36733400  T
Q  107 tttgctagagaagtaaagccacccgaccagaaatgtctcggctttctgaataacatatgtcaaaaacaaaatctgccaaactgctctcatttccaactcg 206  Q
    ||||| | |||||||||||||||||||||| ||||||||  ||||||||| |||||||||||||||||||||||| ||||||||||||| |||||| |||    
T  36733399 tttgccaaagaagtaaagccacccgaccagcaatgtctcaactttctgaacaacatatgtcaaaaacaaaatctgtcaaactgctctcagttccaattcg 36733300  T
Q  207 cgtatacagcacagacgaaagtcctgcccaataccaactttcacgcgccaccgtacaa 264  Q
    ||| | |||||||| ||||||| ||||||||||||||||||||| |||||||||||||    
T  36733299 cgtttgcagcacagtcgaaagttctgcccaataccaactttcacacgccaccgtacaa 36733242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 7 - 264
Target Start/End: Complemental strand, 5609145 - 5608888
Alignment:
Q  7 acctcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaa 106  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||   ||| ||||||| ||| | |||||||||  ||||||| | |||||||||||    
T  5609145 acctcttgccattgctaccatgcatctagtgtcgtcctcccaatgctcaatgatgtatgatgagcataattccaaatagtatcattgcatgcagcccaaa 5609046  T
Q  107 tttgctagagaagtaaagccacccgaccagaaatgtctcggctttctgaataacatatgtcaaaaacaaaatctgccaaactgctctcatttccaactcg 206  Q
    ||||| | |||||||||||||||||||||  ||||||||| |||||||||  |||||| ||||||| ||||||||||||||| ||| || ||||||||||    
T  5609045 tttgccaaagaagtaaagccacccgaccaacaatgtctcgactttctgaacgacatatatcaaaaataaaatctgccaaactactcacagttccaactcg 5608946  T
Q  207 cgtatacagcacagacgaaagtcctgcccaataccaactttcacgcgccaccgtacaa 264  Q
    ||  | | |||||| |||||||||||||||||||||||| ||||||||||| ||||||    
T  5608945 cggttgccgcacagtcgaaagtcctgcccaataccaactctcacgcgccacagtacaa 5608888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 7 - 264
Target Start/End: Complemental strand, 51113121 - 51112864
Alignment:
Q  7 acctcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaa 106  Q
    ||||| |||||||||||||||||||||||||  ||||| || |||||||||||||| |||| | ||||||| ||||||| ||||||||||||| ||||||    
T  51113121 acctcctgccattgctgccatgcatctagtgctgtcctcccgatgcttgttgaagtgtgatgaacgtcatttcaaatgacatcattacgtgcaacccaaa 51113022  T
Q  107 tttgctagagaagtaaagccacccgaccagaaatgtctcggctttctgaataacatatgtcaaaaacaaaatctgccaaactgctctcatttccaactcg 206  Q
    ||||| | |||||||||||||||||||||| | |||||||  |||| ||| ||||||||||||||||||||||||||||||| ||  || | ||||||||    
T  51113021 tttgccaaagaagtaaagccacccgaccagcagtgtctcgattttcggaacaacatatgtcaaaaacaaaatctgccaaactacttgcagtgccaactcg 51112922  T
Q  207 cgtatacagcacagacgaaagtcctgcccaataccaactttcacgcgccaccgtacaa 264  Q
     |  | |||||||  |||||| ||||||||||||||||| ||||||||||||||||||    
T  51112921 tgattgcagcacaatcgaaagccctgcccaataccaactctcacgcgccaccgtacaa 51112864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 7 - 125
Target Start/End: Complemental strand, 44527071 - 44526953
Alignment:
Q  7 acctcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaa 106  Q
    |||||||||||||| ||||||||||||||||| ||||| |||||||| |||||||| |||| ||| ||||||||||||| |||||||||||||| |||||    
T  44527071 acctcttgccattgttgccatgcatctagtgttgtcctcccaatgctcgttgaagtgtgatgagcatcattccaaatgacatcattacgtgcagtccaaa 44526972  T
Q  107 tttgctagagaagtaaagc 125  Q
    ||||| | |||| ||||||    
T  44526971 tttgccaaagaaataaagc 44526953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 4394965 - 4394905
Alignment:
Q  7 acctcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgat 67  Q
    |||||||||||||| || ||||||||||||| |||||| |||||||| ||||| |||||||    
T  4394965 acctcttgccattgttgtcatgcatctagtgccgtcctcccaatgctcgttgatgtatgat 4394905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 24538315 - 24538260
Alignment:
Q  7 acctcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagt 62  Q
    |||||||||||||| || |||||||||| ||  |||||||||||||||||||||||    
T  24538315 acctcttgccattgttgtcatgcatctaatgatgtccttccaatgcttgttgaagt 24538260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 158; Significance: 4e-84; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 7 - 264
Target Start/End: Original strand, 22767638 - 22767895
Alignment:
Q  7 acctcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaa 106  Q
    |||||||||||||||||||||||||||| ||| ||| ||||||||| | |||||||||||| ||||||||||||||||| ||||||||| ||||||||||    
T  22767638 acctcttgccattgctgccatgcatctaatgttgtcattccaatgccttttgaagtatgatgagcgtcattccaaatgacatcattacgagcagcccaaa 22767737  T
Q  107 tttgctagagaagtaaagccacccgaccagaaatgtctcggctttctgaataacatatgtcaaaaacaaaatctgccaaactgctctcatttccaactcg 206  Q
    ||||| | |||||||||||||| ||||||  | ||||||||||||||||| |||||||||||||||||||||||||||| | ||||| | ||||||||||    
T  22767738 tttgccaaagaagtaaagccactcgaccaacagtgtctcggctttctgaacaacatatgtcaaaaacaaaatctgccaaccggctcttagttccaactcg 22767837  T
Q  207 cgtatacagcacagacgaaagtcctgcccaataccaactttcacgcgccaccgtacaa 264  Q
    ||| | |||||||| ||||||| |||||||||||||||||||||| || |||||||||    
T  22767838 cgtttgcagcacagtcgaaagttctgcccaataccaactttcacgtgcaaccgtacaa 22767895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 9 - 264
Target Start/End: Complemental strand, 12660148 - 12659893
Alignment:
Q  9 ctcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaatt 108  Q
    ||||||||||| |||||||| |||||| || ||||| ||||||||| |||||||||||| ||| ||||||||||||| ||||||||||||| ||||||||    
T  12660148 ctcttgccattactgccatgtatctagagttgtcctcccaatgcttcttgaagtatgatgagcttcattccaaatgacatcattacgtgcaacccaaatt 12660049  T
Q  109 tgctagagaagtaaagccacccgaccagaaatgtctcggctttctgaataacatatgtcaaaaacaaaatctgccaaactgctctcatttccaactcgcg 208  Q
    | | | | | | |||||||||||||||| ||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||  |||||||||      
T  12660048 taccaaatatggaaagccacccgaccagcaatgtctcgactttctgaacaacatatgtcaaaaataaaatctgccaaactgctctcaaatccaactcgtc 12659949  T
Q  209 tatacagcacagacgaaagtcctgcccaataccaactttcacgcgccaccgtacaa 264  Q
    | | |||||||| |||||||||||||||||||||||| |||| |||||||||||||    
T  12659948 tttgcagcacagtcgaaagtcctgcccaataccaactctcacacgccaccgtacaa 12659893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 7 - 258
Target Start/End: Original strand, 30223180 - 30223431
Alignment:
Q  7 acctcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaa 106  Q
    |||||||| ||||| || |||||||||||||| || ||||||||  ||||||||||||||| |||||||||| ||||||  |||||||||||  ||||||    
T  30223180 acctcttgtcattgttgtcatgcatctagtgttgttcttccaataattgttgaagtatgatgagcgtcattctaaatgacttcattacgtgcttcccaaa 30223279  T
Q  107 tttgctagagaagtaaagccacccgaccagaaatgtctcggctttctgaataacatatgtcaaaaacaaaatctgccaaactgctctcatttccaactcg 206  Q
    ||||| | ||||| |||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||| || |||||||||| || ||||||||||    
T  30223280 tttgccaaagaagcaaagccacccgaccagcaatgtctcagctttctgaacaacatatgtcaaaaacaaaatatgtcaaactgctcacagttccaactcg 30223379  T
Q  207 cgtatacagcacagacgaaagtcctgcccaataccaactttcacgcgccacc 258  Q
    ||  | || ||||| |||||| ||||||||||||||||| ||||||||||||    
T  30223380 cggttgcaacacagtcgaaagccctgcccaataccaactctcacgcgccacc 30223431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 7 - 264
Target Start/End: Original strand, 27533288 - 27533545
Alignment:
Q  7 acctcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaa 106  Q
    |||||||| ||||| ||||||||||||||||| ||| |||||||||||||||||||||||| | ||||||||||||| | || ||||| |||||||||||    
T  27533288 acctcttgtcattgttgccatgcatctagtgttgtctttccaatgcttgttgaagtatgatgaacgtcattccaaataacataattacatgcagcccaaa 27533387  T
Q  107 tttgctagagaagtaaagccacccgaccagaaatgtctcggctttctgaataacatatgtcaaaaacaaaatctgccaaactgctctcatttccaactcg 206  Q
    ||||| | |||||||||| ||||||||||| ||| |||||||||||||||  |||||| ||||||||||||||||  ||||| | |  | ||||||||||    
T  27533388 tttgccaaagaagtaaagtcacccgaccagcaatatctcggctttctgaacgacatatatcaaaaacaaaatctgttaaactacccatagttccaactcg 27533487  T
Q  207 cgtatacagcacagacgaaagtcctgcccaataccaactttcacgcgccaccgtacaa 264  Q
    ||  | |||||||| |||||| ||||||||||||||||| ||| ||||||||||||||    
T  27533488 cgattgcagcacagtcgaaagccctgcccaataccaactctcatgcgccaccgtacaa 27533545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 7 - 264
Target Start/End: Complemental strand, 25730647 - 25730390
Alignment:
Q  7 acctcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaa 106  Q
    |||||||| |||||||||||||||| || || |||| | |||||||| ||||| ||||||| ||| |||||||||||| |||||||||||||||| ||||    
T  25730647 acctcttggcattgctgccatgcatataatgccgtcttcccaatgctcgttgatgtatgatgagcatcattccaaatggtatcattacgtgcagctcaaa 25730548  T
Q  107 tttgctagagaagtaaagccacccgaccagaaatgtctcggctttctgaataacatatgtcaaaaacaaaatctgccaaactgctctcatttccaactcg 206  Q
    ||||| | |||||||||||||  ||||||| || |||||| ||||||||| ||||||| |||||||||||||||||||||||  || || ||||||||||    
T  25730547 tttgccaaagaagtaaagccattcgaccagcaaagtctcgactttctgaacaacatatatcaaaaacaaaatctgccaaactattcacagttccaactcg 25730448  T
Q  207 cgtatacagcacagacgaaagtcctgcccaataccaactttcacgcgccaccgtacaa 264  Q
    ||  | || ||||| |||||||| |||||||||||||||  ||||||||| |||||||    
T  25730447 cggttgcaccacagtcgaaagtcttgcccaataccaactcccacgcgccatcgtacaa 25730390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 7 - 260
Target Start/End: Complemental strand, 20204761 - 20204509
Alignment:
Q  7 acctcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaa 106  Q
    |||||||||||||| ||||||||||||||||  ||||| |||||||| ||||||||||||| |||||||| |||| ||| ||||||||||||| ||||||    
T  20204761 acctcttgccattgttgccatgcatctagtgctgtcctcccaatgctcgttgaagtatgatgagcgtcataccaa-tgacatcattacgtgcaacccaaa 20204663  T
Q  107 tttgctagagaagtaaagccacccgaccagaaatgtctcggctttctgaataacatatgtcaaaaacaaaatctgccaaactgctctcatttccaactcg 206  Q
    || |  | ||||||||||||||| |||||| ||||||||| |||||||||  |||||| ||||||||||||||| ||||||||||| || |||||| |||    
T  20204662 ttcgtcaaagaagtaaagccacctgaccagcaatgtctcgactttctgaacgacatatatcaaaaacaaaatctaccaaactgctcacagttccaattcg 20204563  T
Q  207 cgtatacagcacagacgaaagtcctg-cccaataccaactttcacgcgccaccgt 260  Q
     |  | || ||||| |||||| |||| ||||||||||||| ||||||||||||||    
T  20204562 tggttgcaacacagtcgaaag-cctgacccaataccaactctcacgcgccaccgt 20204509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 7 - 264
Target Start/End: Complemental strand, 8387892 - 8387630
Alignment:
Q  7 acctcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaa 106  Q
    ||||| || |||||||||||||||||||||||  |||| ||||||||||||||||| || | ||||||||||||||||| ||||||||||||||||||||    
T  8387892 acctcctgtcattgctgccatgcatctagtgttttcctcccaatgcttgttgaagtgtggtgagcgtcattccaaatgacatcattacgtgcagcccaaa 8387793  T
Q  107 tttgctagagaagtaaagccacccgaccagaaatgtctcggctttctgaataacatatgtca-----aaaacaaaatctgccaaactgctctcatttcca 201  Q
    ||| | | |||||||||||||||||||||| ||||||||   ||||  || |||||||||||     |||||||||||||||||||| ||  || | |||    
T  8387792 ttttccaaagaagtaaagccacccgaccagcaatgtctcaattttcgaaacaacatatgtcaaaattaaaacaaaatctgccaaactacttgcagtgcca 8387693  T
Q  202 actcgcgtatacagcacagacgaaagtcctgcccaataccaactttcacgcgccaccgtacaa 264  Q
    ||||| |  | |||||||| |||||||| ||||||||| ||||| ||| || |||||||||||    
T  8387692 actcgtgattgcagcacagtcgaaagtcttgcccaataacaactctcatgctccaccgtacaa 8387630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 175
Target Start/End: Original strand, 15989130 - 15989298
Alignment:
Q  7 acctcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaa 106  Q
    |||||||||||||| ||||||||||||| || |||||| |||||||| ||||| ||||||| || ||||||  |||||  ||||||||||||| ||||||    
T  15989130 acctcttgccattgttgccatgcatctaatgccgtcctcccaatgctcgttgatgtatgatgagtgtcattttaaatggcatcattacgtgcatcccaaa 15989229  T
Q  107 tttgctagagaagtaaagccacccgaccagaaatgtctcggctttctgaataacatatgtcaaaaacaa 175  Q
    ||| ||| |||||||||||||||||||||| ||||||| |||||||||||  | |||| ||||||||||    
T  15989230 ttttctaaagaagtaaagccacccgaccagcaatgtcttggctttctgaacgaaatatatcaaaaacaa 15989298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 12 - 175
Target Start/End: Original strand, 34653977 - 34654140
Alignment:
Q  12 ttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaatttgc 111  Q
    ||||||||| ||||||||||||||||  ||| |||||||||||| | ||||||||| ||||||||||||||||| |||||| |||| |||| |||||||     
T  34653977 ttgccattgttgccatgcatctagtgatgtctttccaatgcttgataaagtatgatgagcgtcattccaaatgacatcattgcgtgtagccaaaatttgt 34654076  T
Q  112 tagagaagtaaagccacccgaccagaaatgtctcggctttctgaataacatatgtcaaaaacaa 175  Q
     | |||||||||||||||| ||||  |||||||  |||||||||| ||||||||||||||||||    
T  34654077 caaagaagtaaagccaccctaccaacaatgtcttagctttctgaacaacatatgtcaaaaacaa 34654140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 7 - 205
Target Start/End: Original strand, 41941118 - 41941313
Alignment:
Q  7 acctcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaa 106  Q
    |||||||||||||  || |||| ||||||||| |||||||||||||  |||||| |||||| |||| |||||||||||| ||||||||||| ||||||||    
T  41941118 acctcttgccattattgtcatgtatctagtgttgtccttccaatgc--gttgaaatatgatgagcgacattccaaatgacatcattacgtgtagcccaaa 41941215  T
Q  107 tttgctagagaagtaaagccacccgaccagaaatgtctcggctttctgaataacatatgtcaaaaacaaaatctgccaaactgctctcatttccaactc 205  Q
    | ||  | |||||||||  ||||||| ||| ||||||||| |||| |||||| |||||||||||||||||||||| |  |||||||||| |||||||||    
T  41941216 tatgtcaaagaagtaaattcacccgatcagcaatgtctcgactttttgaatagcatatgtcaaaaacaaaatctgtc-gactgctctcagttccaactc 41941313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 7 - 264
Target Start/End: Complemental strand, 27292252 - 27291992
Alignment:
Q  7 acctcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaa 106  Q
    |||||||||||||| || ||||||||||||   ||||| || |||||  ||||||| |||| | | ||| |||| |||| |||||||||||| || ||||    
T  27292252 acctcttgccattgttgacatgcatctagtcctgtcctcccgatgctcattgaagtgtgatgatcatcactccagatgacatcattacgtgctgctcaaa 27292153  T
Q  107 tttgctagagaagt---aaagccacccgaccagaaatgtctcggctttctgaataacatatgtcaaaaacaaaatctgccaaactgctctcatttccaac 203  Q
    ||||| | ||||||   |||||||||||||||| ||||| ||| |||||||||  |||||| |||||||||||||||| |||||| ||| || |||||||    
T  27292152 tttgccaaagaagttataaagccacccgaccagcaatgtttcgactttctgaacgacatatatcaaaaacaaaatctgtcaaacttctcacagttccaac 27292053  T
Q  204 tcgcgtatacagcacagacgaaagtcctgcccaataccaactttcacgcgccaccgtacaa 264  Q
    |||||  | |||||||  |||||| ||||||||  | ||||| ||| |||||| |||||||    
T  27292052 tcgcggttgcagcacaatcgaaagccctgcccataaacaactctcatgcgccatcgtacaa 27291992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 4267917 - 4267829
Alignment:
Q  7 acctcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacg 95  Q
    |||||||||||||||||||||||||||||||  ||||| |||||| | |||||||| |||| ||| ||||||||||||| |||||||||    
T  4267917 acctcttgccattgctgccatgcatctagtgctgtcctcccaatgttcgttgaagtgtgatgagcatcattccaaatgacatcattacg 4267829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 16074540 - 16074451
Alignment:
Q  9 ctcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgca 99  Q
    |||||| ||||| ||||| |||||||| |  ||||| ||||||||| |||||||||||| | ||||||||||||||| |||||||||||||    
T  16074540 ctcttgtcattgttgccaagcatctagagctgtcct-ccaatgcttcttgaagtatgatgaacgtcattccaaatgacatcattacgtgca 16074451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 159 - 264
Target Start/End: Complemental strand, 26296012 - 26295907
Alignment:
Q  159 acatatgtcaaaaacaaaatctgccaaactgctctcatttccaactcgcgtatacagcacagacgaaagtcctgcccaataccaactttcacgcgccacc 258  Q
    |||||| ||||||||||||||||||||| | ||| || ||||||||||||  |  |||| || |||||| ||||||||||||||||| ||  |||| |||    
T  26296012 acatatatcaaaaacaaaatctgccaaatttctcacagttccaactcgcggttgtagcatagtcgaaagccctgcccaataccaactctcttgcgctacc 26295913  T
Q  259 gtacaa 264  Q
    ||||||    
T  26295912 gtacaa 26295907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 7 - 263
Target Start/End: Original strand, 37246237 - 37246494
Alignment:
Q  7 acctcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaag-tatgataagcgtcattccaaatgatatcattacgtgcagcccaa 105  Q
    ||||| |||||||||||||||||||| || |  |||||||||||||||||||||| ||| || |||||| |||||||||| |||||||| ||||||||||    
T  37246237 acctcatgccattgctgccatgcatccagagctgtccttccaatgcttgttgaaggtataatgagcgtccttccaaatgacatcattacatgcagcccaa 37246336  T
Q  106 atttgctagagaagtaaagccacccgaccagaaatgtctcggctttctgaataacatatgtcaaaaacaaaatctgccaaactgctctcatttccaactc 205  Q
    |||| | | |||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||| || |||||| |||||| |||||||||    
T  37246337 attttccaaagaagtaaagccacacgaccagcaatgtctcggctttctgaacaacatatgtcaaaaacaaaatttgtcaaactactctcagttccaactc 37246436  T
Q  206 gcgtatacagcacagacgaaagtcctgcccaataccaactttcacgcgccaccgtaca 263  Q
    |||| | || ||||| ||||||||||| ||||||||||||||||| ||||||||||||    
T  37246437 gcgtttgcaacacagtcgaaagtcctgtccaataccaactttcactcgccaccgtaca 37246494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 7 - 264
Target Start/End: Complemental strand, 28426001 - 28425744
Alignment:
Q  7 acctcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaa 106  Q
    |||||||||||||||||||||||||||| ||  ||||||||||||  | |||||||||||| | ||||||||||||||| ||||||||| |||||| |||    
T  28426001 acctcttgccattgctgccatgcatctaatgctgtccttccaatgacttttgaagtatgatgaacgtcattccaaatgacatcattacgagcagcctaaa 28425902  T
Q  107 tttgctagagaagtaaagccacccgaccagaaatgtctcggctttctgaataacatatgtcaaaaacaaaatctgccaaactgctctcatttccaactcg 206  Q
    ||||| | ||||| |||||||| ||||||  | ||| ||||||||||||| |||||| ||||||||||||||||||||| | ||||||| ||||||| ||    
T  28425901 tttgccaaagaaggaaagccactcgaccaacagtgtttcggctttctgaacaacatacgtcaaaaacaaaatctgccaagcggctctcagttccaacacg 28425802  T
Q  207 cgtatacagcacagacgaaagtcctgcccaataccaactttcacgcgccaccgtacaa 264  Q
    ||| | |||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  28425801 cgtttgcagcacagtcgaaagtcctgcccaataccaactttcacgcgcaaccgtacaa 28425744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 7 - 264
Target Start/End: Original strand, 51259911 - 51260167
Alignment:
Q  7 acctcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaa 106  Q
    ||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||| |||| ||||||||||||||||| ||| ||||||||||||||||    
T  51259911 acctcctgccattgctgccatgcatctagtgttgtcctcccaatgcttgttgaagtgtgatgagcgtcattccaaatgacatctttacgtgcagcccaaa 51260010  T
Q  107 tttgctagagaagtaaagccacccgaccagaaatgtctcggctttctgaataacatatgtcaaaaacaaaatctgccaaactgctctcatttccaactcg 206  Q
    ||||| | |||||||||||||||||||||  | |||||||  |||| ||| ||||||||||||||||||||||||||||||| ||  || | ||||||||    
T  51260011 tttgccaaagaagtaaagccacccgaccaacagtgtctcgattttc-gaacaacatatgtcaaaaacaaaatctgccaaactacttgcagtgccaactcg 51260109  T
Q  207 cgtatacagcacagacgaaagtcctgcccaataccaactttcacgcgccaccgtacaa 264  Q
     |  | |||||||| |||||| ||||||||||||||||| |||||| |||||||||||    
T  51260110 tgattgcagcacagtcgaaagccctgcccaataccaactctcacgcaccaccgtacaa 51260167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 7 - 264
Target Start/End: Original strand, 28538166 - 28538423
Alignment:
Q  7 acctcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaa 106  Q
    |||||||||||||| || |||||||||||||| |||||||| ||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  28538166 acctcttgccattgttgacatgcatctagtgttgtccttcccatgctcgttgaagtatgatgagcgtcattccaaatgacatcattacgtgcagcccaaa 28538265  T
Q  107 tttgctagagaagtaaagccacccgaccagaaatgtctcggctttctgaataacatatgtcaaaaacaaaatctgccaaactgctctcatttccaactcg 206  Q
    ||||| | ||||||| |||||||||||||| ||| |||||||||||||||  |||||| ||||||||||| ||||||||||||||| || ||||||||||    
T  28538266 tttgccaaagaagtacagccacccgaccagcaatatctcggctttctgaacgacatatatcaaaaacaaagtctgccaaactgctcacagttccaactcg 28538365  T
Q  207 cgtatacagcacagacgaaagtcctgcccaataccaactttcacgcgccaccgtacaa 264  Q
    ||  | |||| ||| || ||| ||| |||| |||||||| ||  | ||||||||||||    
T  28538366 cggttgcagcgcagtcgcaagccctacccagtaccaactctcttgtgccaccgtacaa 28538423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 10 - 264
Target Start/End: Complemental strand, 55734812 - 55734558
Alignment:
Q  10 tcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaattt 109  Q
    ||||||||||| |||||| |||||||||| ||||| ||||||||  |||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  55734812 tcttgccattgttgccatacatctagtgttgtcctcccaatgctcattgaagtatgatgagcgtcattctaaatgatatcattacgtgcagcccaaattt 55734713  T
Q  110 gctagagaagtaaagccacccgaccagaaatgtctcggctttctgaataacatatgtcaaaaacaaaatctgccaaactgctctcatttccaactcgcgt 209  Q
    || | |||||||||||||||||||||| ||| ||||| ||||||||   |||||| |||||||||||||||||||| ||||||  | |||||| ||| |     
T  55734712 gccaaagaagtaaagccacccgaccagcaatatctcgtctttctgagcgacatatatcaaaaacaaaatctgccaagctgctcataattccaattcgtgg 55734613  T
Q  210 atacagcacagacgaaagtcctgcccaataccaactttcacgcgccaccgtacaa 264  Q
     | |||||||| | |||| ||||| ||||||||||| ||||||||||||||||||    
T  55734612 ttgcagcacagtcaaaagccctgcgcaataccaactctcacgcgccaccgtacaa 55734558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 7 - 264
Target Start/End: Original strand, 32577427 - 32577669
Alignment:
Q  7 acctcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaa 106  Q
    ||||||||||||||| |||||||||||| ||| ||||||||||||| | |||||||||||||||||||||||||||||| ||||||||| |||||| |||    
T  32577427 acctcttgccattgccgccatgcatctaatgttgtccttccaatgccttttgaagtatgataagcgtcattccaaatgacatcattacgagcagcctaaa 32577526  T
Q  107 tttgctagagaagtaaagccacccgaccagaaatgtctcggctttctgaataacatatgtcaaaaacaaaatctgccaaactgctctcatttccaactcg 206  Q
    ||| | | |||||||||| ||| ||||               |||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  32577527 ttttccaaagaagtaaagtcactcgac---------------tttctgaacaacatatgtcaaaaacaaaatctgccaagctgctctcaattccaactcg 32577611  T
Q  207 cgtatacagcacagacgaaagtcctgcccaataccaactttcacgcgccaccgtacaa 264  Q
    ||| | |||||||| ||||||||||||| ||||||||||||||||||| |||||||||    
T  32577612 cgtttgcagcacagtcgaaagtcctgcctaataccaactttcacgcgcaaccgtacaa 32577669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 7 - 264
Target Start/End: Original strand, 29656046 - 29656303
Alignment:
Q  7 acctcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaa 106  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||| |  ||||||||||| || ||||||| |||| |||||||    
T  29656046 acctctttccattgctgccatgcatctagtgttgtccttccaatgctttttgaagtatgatgactgtcattccaaacgacatcattatgtgctgcccaaa 29656145  T
Q  107 tttgctagagaagtaaagccacccgaccagaaatgtctcggctttctgaataacatatgtcaaaaacaaaatctgccaaactgctctcatttccaactcg 206  Q
    ||||| | | || ||||||||| ||| ||  ||||||||||||||||||| ||||||| ||| |||||||||||| ||||||||| ||| ||||||||||    
T  29656146 tttgccaaataaataaagccacgcgagcaacaatgtctcggctttctgaacaacatatatcataaacaaaatctgtcaaactgctttcagttccaactcg 29656245  T
Q  207 cgtatacagcacagacgaaagtcctgcccaataccaactttcacgcgccaccgtacaa 264  Q
      | | || || ||  ||||||||||||||||||||||| ||| ||||||||||||||    
T  29656246 tctttgcatcatagttgaaagtcctgcccaataccaactctcatgcgccaccgtacaa 29656303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 7 - 207
Target Start/End: Original strand, 51735353 - 51735553
Alignment:
Q  7 acctcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaa 106  Q
    |||||||||||||||||| |  ||||||||||  ||||||||||||||||||||||||||| ||| ||||||||||||| ||||||| ||||||| ||||    
T  51735353 acctcttgccattgctgctagacatctagtgttatccttccaatgcttgttgaagtatgatgagcatcattccaaatgacatcattatgtgcagctcaaa 51735452  T
Q  107 tttgctagagaagtaaagccacccgaccagaaatgtctcggctttctgaataacatatgtcaaaaacaaaatctgccaaactgctctcatttccaactcg 206  Q
    ||||  | |||||||||||||||| ||||| |||||||  |||||||||| |||||||||||||||||||||||| |||| |||||||| ||||||||||    
T  51735453 tttgtcaaagaagtaaagccacccaaccagcaatgtctgagctttctgaacaacatatgtcaaaaacaaaatctgtcaaattgctctcagttccaactcg 51735552  T
Q  207 c 207  Q
    |    
T  51735553 c 51735553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 10 - 264
Target Start/End: Original strand, 18442528 - 18442782
Alignment:
Q  10 tcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaattt 109  Q
    ||||||||||| |||||||||| |||||| ||||| ||||||||  || ||||||||| ||||||||||||||||| ||||||||||| |||||||||||    
T  18442528 tcttgccattgttgccatgcatatagtgttgtcctcccaatgctcattaaagtatgatgagcgtcattccaaatgacatcattacgtgtagcccaaattt 18442627  T
Q  110 gctagagaagtaaagccacccgaccagaaatgtctcggctttctgaataacatatgtcaaaaacaaaatctgccaaactgctctcatttccaactcgcgt 209  Q
     | | ||||||||||||||| |||||| ||| ||||||||||||||   |||||| ||||| |||||||||||||||||||||  | ||| || ||||      
T  18442628 tccaaagaagtaaagccacctgaccagcaatatctcggctttctgagcgacatatatcaaatacaaaatctgccaaactgctcatagttctaattcgcag 18442727  T
Q  210 atacagcacagacgaaagtcctgcccaataccaactttcacgcgccaccgtacaa 264  Q
     | |||||||| | |||| | || |||||||||||| ||||||||||||||||||    
T  18442728 ttgcagcacagtcaaaagccatgtccaataccaactctcacgcgccaccgtacaa 18442782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 7 - 264
Target Start/End: Complemental strand, 2064659 - 2064402
Alignment:
Q  7 acctcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaa 106  Q
    |||||||||||||| || ||||||||||  |  ||||| ||||||||  |||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  2064659 acctcttgccattgttgtcatgcatctaaagatgtcctcccaatgctcattgaagtatgatgagcgtcattccaaatgacatcattacgtgcagcccaaa 2064560  T
Q  107 tttgctagagaagtaaagccacccgaccagaaatgtctcggctttctgaataacatatgtcaaaaacaaaatctgccaaactgctctcatttccaactcg 206  Q
    ||||| | | ||||||| |||||||||||  ||||||| | |||||||||  | |||| || ||| |||||||||||||||||||| || ||||||||||    
T  2064559 tttgccaaaaaagtaaaaccacccgaccatcaatgtcttgactttctgaacgagatatatctaaagcaaaatctgccaaactgctcacagttccaactcg 2064460  T
Q  207 cgtatacagcacagacgaaagtcctgcccaataccaactttcacgcgccaccgtacaa 264  Q
    |   | || |||||   |||| |||||||||| |||||| |||||||||| |||||||    
T  2064459 cagttgcaacacagttaaaagccctgcccaattccaactctcacgcgccatcgtacaa 2064402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 7 - 177
Target Start/End: Complemental strand, 56065435 - 56065265
Alignment:
Q  7 acctcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaa 106  Q
    ||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||| |||| ||||||||||||||||| ||||||||| ||||||||||    
T  56065435 acctcctgccattgctgccatgcatctagtgttgtcctcccaatgcttgttgaagtgtgatgagcgtcattccaaatgacatcattacgggcagcccaaa 56065336  T
Q  107 tttgctagagaagtaaagccacccgaccagaaatgtctcggctttctgaataacatatgtcaaaaacaaaa 177  Q
    ||||| | |||||||||  ||||||||||  | |||||||  |||||||| ||||||||||||||| ||||    
T  56065335 tttgccaaagaagtaaaaacacccgaccaacagtgtctcgattttctgaacaacatatgtcaaaaaaaaaa 56065265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 7 - 264
Target Start/End: Complemental strand, 49951119 - 49950872
Alignment:
Q  7 acctcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaa 106  Q
    |||||||||||||| |||||||| |||||||| |||||| ||||||| ||||||||||||| |||||||||          ||||||| |||| | ||||    
T  49951119 acctcttgccattgttgccatgcttctagtgttgtcctttcaatgctcgttgaagtatgatgagcgtcatt----------tcattacatgcaactcaaa 49951030  T
Q  107 tttgctagagaagtaaagccacccgaccagaaatgtctcggctttctgaataacatatgtcaaaaacaaaatctgccaaactgctctcatttccaactcg 206  Q
    ||||| | |||||||||||| ||||||||| ||||||||||||||||||   |||||| ||||||||||||||||||||| ||||| || ||||| || |    
T  49951029 tttgccaaagaagtaaagccgcccgaccagcaatgtctcggctttctgagcgacatatatcaaaaacaaaatctgccaaattgctcacagttccagcttg 49950930  T
Q  207 cgtatacagcacagacgaaagtcctgcccaataccaactttcacgcgccaccgtacaa 264  Q
    ||  | |||||||| | |||| || ||||||||| |||| || |||||||||||||||    
T  49950929 cggttgcagcacagtcaaaagccccgcccaatactaactctcgcgcgccaccgtacaa 49950872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 7 - 163
Target Start/End: Original strand, 49119768 - 49119923
Alignment:
Q  7 acctcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaa 106  Q
    |||||||||||||||||||||||||||| ||  ||||||||||||  | |||||||||||| | ||||||||||||||| ||||||||| |||||| |||    
T  49119768 acctcttgccattgctgccatgcatctaatgctgtccttccaatgacttttgaagtatgatgaacgtcattccaaatgacatcattacgagcagcctaaa 49119867  T
Q  107 tttgctagagaagtaaagccacccgaccagaaatgtctcggctttctgaataacata 163  Q
    ||||| | ||||| |||||||| |||||| | | || ||||||||||||| ||||||    
T  49119868 tttgccaaagaaggaaagccactcgacca-acaggtttcggctttctgaacaacata 49119923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 158 - 264
Target Start/End: Original strand, 26422761 - 26422867
Alignment:
Q  158 aacatatgtcaaaaacaaaatctgccaaactgctctcatttccaactcgcgtatacagcacagacgaaagtcctgcccaataccaactttcacgcgccac 257  Q
    ||||||||||||||||||||||||||||    |||||| ||||||||||||| |  ||||||| ||||||||||||| ||||||||||||||| ||| ||    
T  26422761 aacatatgtcaaaaacaaaatctgccaagtgactctcagttccaactcgcgtttgtagcacagtcgaaagtcctgcctaataccaactttcacacgcaac 26422860  T
Q  258 cgtacaa 264  Q
    |||||||    
T  26422861 cgtacaa 26422867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 21321330 - 21321263
Alignment:
Q  10 tcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcatt 77  Q
    ||||||||||||||||| ||||||||||  ||||| |||||||| ||||| ||||||| || ||||||    
T  21321330 tcttgccattgctgccaagcatctagtgctgtcctcccaatgctcgttgatgtatgatgagtgtcatt 21321263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 264
Target Start/End: Complemental strand, 56063641 - 56063551
Alignment:
Q  174 aaaatctgccaaactgctctcatttccaactcgcgtatacagcacagacgaaagtcctgcccaataccaactttcacgcgccaccgtacaa 264  Q
    ||||||||||||||| ||  || | |||||||| |  | |||||||| |||||| ||||||||||||||||| ||| ||||||| ||||||    
T  56063641 aaaatctgccaaactacttgcagtgccaactcgtgattgcagcacagtcgaaagccctgcccaataccaactctcatgcgccacggtacaa 56063551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 139; Significance: 8e-73; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 10 - 264
Target Start/End: Original strand, 9328985 - 9329239
Alignment:
Q  10 tcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaattt 109  Q
    ||||||||||||||||||||||||| ||| ||||||||||||| | |||||||||||| ||||||| ||||||||| ||||||| | |||||||||||||    
T  9328985 tcttgccattgctgccatgcatctaatgttgtccttccaatgccttttgaagtatgatgagcgtcactccaaatgacatcattatgagcagcccaaattt 9329084  T
Q  110 gctagagaagtaaagccacccgaccagaaatgtctcggctttctgaataacatatgtcaaaaacaaaatctgccaaactgctctcatttccaactcgcgt 209  Q
    |||| |||||||||| ||  ||||||| | ||||||||||||||||| |||||||||||||||||||||||| ||| | ||||||| ||||||||| |||    
T  9329085 gctaaagaagtaaagtcattcgaccagcagtgtctcggctttctgaacaacatatgtcaaaaacaaaatctgtcaagcggctctcagttccaactcacgt 9329184  T
Q  210 atacagcacagacgaaagtcctgcccaataccaactttcacgcgccaccgtacaa 264  Q
     | || ||||| |||||||| | |||||||||||||||||||||  |||||||||    
T  9329185 ttgcaacacagtcgaaagtcttacccaataccaactttcacgcggaaccgtacaa 9329239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 7 - 264
Target Start/End: Complemental strand, 22289047 - 22288790
Alignment:
Q  7 acctcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaa 106  Q
    ||||| || ||||||||||||||||||||||| ||||| ||||||||||||||||| |||| ||||| ||||||||||| ||| |||||||||| |||||    
T  22289047 acctcctgtcattgctgccatgcatctagtgttgtcctcccaatgcttgttgaagtgtgatgagcgtaattccaaatgacatcgttacgtgcagtccaaa 22288948  T
Q  107 tttgctagagaagtaaagccacccgaccagaaatgtctcggctttctgaataacatatgtcaaaaacaaaatctgccaaactgctctcatttccaactcg 206  Q
    ||||| | ||||||||||||||||||||||   |||||||  |||| ||| ||||||||||||||||||||||| ||||||  ||  || | ||||||||    
T  22288947 tttgccaaagaagtaaagccacccgaccagctgtgtctcgattttcggaacaacatatgtcaaaaacaaaatctaccaaaccacttgcagtgccaactcg 22288848  T
Q  207 cgtatacagcacagacgaaagtcctgcccaataccaactttcacgcgccaccgtacaa 264  Q
     |  | |||||||  ||||||| |||||||||||||||| ||| ||||||||||||||    
T  22288847 tgattgcagcacattcgaaagttctgcccaataccaactctcatgcgccaccgtacaa 22288790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 7 - 201
Target Start/End: Complemental strand, 16731739 - 16731545
Alignment:
Q  7 acctcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaa 106  Q
    |||||||||||||| |||||||| |||||||| ||||| |||||||| ||||||||| ||| ||||||||||||||||| |||||||||||||| |||||    
T  16731739 acctcttgccattgttgccatgcttctagtgttgtcctcccaatgctcgttgaagtacgatgagcgtcattccaaatgacatcattacgtgcagtccaaa 16731640  T
Q  107 tttgctagagaagtaaagccacccgaccagaaatgtctcggctttctgaataacatatgtcaaaaacaaaatctgccaaactgctctcatttcca 201  Q
    ||||| | |||||||||||||||||||||  ||||||||||||||||||  || |||| ||||||||||||||||||||||| ||| || |||||    
T  16731639 tttgcaaaagaagtaaagccacccgaccaacaatgtctcggctttctgagcaatatatatcaaaaacaaaatctgccaaactactcacagttcca 16731545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 7 - 201
Target Start/End: Complemental strand, 17709873 - 17709679
Alignment:
Q  7 acctcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaa 106  Q
    |||||||||||||| |||||||| |||||||| ||||| |||||||| ||||||||| ||| ||||||||||||||||| |||||||||||||| |||||    
T  17709873 acctcttgccattgttgccatgcttctagtgttgtcctcccaatgctcgttgaagtacgatgagcgtcattccaaatgacatcattacgtgcagtccaaa 17709774  T
Q  107 tttgctagagaagtaaagccacccgaccagaaatgtctcggctttctgaataacatatgtcaaaaacaaaatctgccaaactgctctcatttcca 201  Q
    ||||| | |||||||||||||||||||||  ||||||||||||||||||  || |||| ||||||||||||||||||||||| ||| || |||||    
T  17709773 tttgcaaaagaagtaaagccacccgaccaacaatgtctcggctttctgagcaatatatatcaaaaacaaaatctgccaaactactcacagttcca 17709679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 7 - 264
Target Start/End: Complemental strand, 1581421 - 1581164
Alignment:
Q  7 acctcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaa 106  Q
    |||||||||||||| ||||| |||||||||||||| ||  ||||||| ||||||||||||| ||||||||||||||||| |||||| |||||||||||||    
T  1581421 acctcttgccattgttgccaagcatctagtgtcgttctcgcaatgctcgttgaagtatgatgagcgtcattccaaatgacatcatttcgtgcagcccaaa 1581322  T
Q  107 tttgctagagaagtaaagccacccgaccagaaatgtctcggctttctgaataacatatgtcaaaaacaaaatctgccaaactgctctcatttccaactcg 206  Q
    ||||| | |||| |||||||||| |||||  |||||||||||||| ||||  |||||| ||||| ||||| ||| ||||||| ||| || ||| ||||||    
T  1581321 tttgccaaagaaataaagccacctgaccaacaatgtctcggctttttgaacgacatatatcaaagacaaagtctaccaaacttctcacagttcaaactcg 1581222  T
Q  207 cgtatacagcacagacgaaagtcctgcccaataccaactttcacgcgccaccgtacaa 264  Q
    ||  |  | || || || ||| |||||||||||| |||| ||||||||||||||||||    
T  1581221 cggttggaacatagtcgcaagccctgcccaatacaaactctcacgcgccaccgtacaa 1581164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 7 - 264
Target Start/End: Complemental strand, 16098289 - 16098032
Alignment:
Q  7 acctcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaa 106  Q
    |||||||||||||| ||||||||||||||||  ||||| |||||| |  ||||||| ||| |||| ||||||||||||| ||||||||||||||||||||    
T  16098289 acctcttgccattgatgccatgcatctagtgcagtcctcccaatgttcattgaagtgtgacaagcatcattccaaatgacatcattacgtgcagcccaaa 16098190  T
Q  107 tttgctagagaagtaaagccacccgaccagaaatgtctcggctttctgaataacatatgtcaaaaacaaaatctgccaaactgctctcatttccaactcg 206  Q
    ||||| | |||||||||| ||||||||||| |||||||||||||||| ||  |||||| |||||||||||||||| |||  |||||  | ||||||  ||    
T  16098189 tttgccaaagaagtaaagtcacccgaccagcaatgtctcggctttcttaacgacatatatcaaaaacaaaatctgtcaacatgctcatagttccaatacg 16098090  T
Q  207 cgtatacagcacagacgaaagtcctgcccaataccaactttcacgcgccaccgtacaa 264  Q
    |  || ||| |||| |||||  ||| ||||||||||||| ||| ||||||||||||||    
T  16098089 cagatgcagaacagtcgaaatccctacccaataccaactctcatgcgccaccgtacaa 16098032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 7 - 188
Target Start/End: Original strand, 29201330 - 29201513
Alignment:
Q  7 acctcttgccattgctgccatgcatctagtgtcgtccttccaat--gcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagccca 104  Q
    |||||||| |||||||| |||||||||||||| |||||||||||  ||||||||||||||||| || |||||||||||||| |||||||||||||  |||    
T  29201330 acctcttgtcattgctgtcatgcatctagtgttgtccttccaatatgcttgttgaagtatgatgagtgtcattccaaatgacatcattacgtgcaatcca 29201429  T
Q  105 aatttgctagagaagtaaagccacccgaccagaaatgtctcggctttctgaataacatatgtcaaaaacaaaatctgccaaact 188  Q
    ||||||| | ||||||||| ||||||||||||  |||||||| |||| |||| ||||||||||||||||||||| || ||||||    
T  29201430 aatttgccaaagaagtaaaaccacccgaccagccatgtctcgactttttgaacaacatatgtcaaaaacaaaatatgtcaaact 29201513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 13 - 264
Target Start/End: Complemental strand, 17877217 - 17876962
Alignment:
Q  13 tgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatga----tatcattacgtgcagcccaaatt 108  Q
    |||||||| ||||||||||||||||  ||||| |||||||| ||||||||||||| || ||||||| ||||||    |||||||||||| ||||||||||    
T  17877217 tgccattgttgccatgcatctagtgctgtcctcccaatgctcgttgaagtatgatgagtgtcattctaaatgacatatatcattacgtgtagcccaaatt 17877118  T
Q  109 tgctagagaagtaaagccacccgaccagaaatgtctcggctttctgaataacatatgtcaaaaacaaaatctgccaaactgctctcatttccaactcgcg 208  Q
    ||  | |||||||||| ||||||||||| |||||| |||||||||||   |||||| ||||||| ||||| || |||||||||| || |||||||| |||    
T  17877117 tgtcaaagaagtaaagtcacccgaccagcaatgtcgcggctttctgaccgacatatatcaaaaataaaatttgtcaaactgctcacagttccaacttgcg 17877018  T
Q  209 tatacagcacagacgaaagtcctgcccaataccaactttcacgcgccaccgtacaa 264  Q
      | ||||| ||   |||| ||| ||||||||||||| |||| | |||||||||||    
T  17877017 gttgcagcaaagttaaaagaccttcccaataccaactctcacacaccaccgtacaa 17876962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 130
Target Start/End: Original strand, 11746021 - 11746145
Alignment:
Q  6 cacctcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaa 105  Q
    ||||| ||||||||  || ||||||||| ||| |||||| |||||| ||||||||||||||| || ||||| |||||||| ||  ||||||||| |||||    
T  11746021 cacctgttgccattattgtcatgcatctggtgccgtcctcccaatggttgttgaagtatgatgagtgtcatgccaaatgacattgttacgtgcaacccaa 11746120  T
Q  106 atttgctagagaagtaaagccaccc 130  Q
    |||| | | ||||||||||||||||    
T  11746121 atttacgaaagaagtaaagccaccc 11746145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 131; Significance: 5e-68; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 10 - 264
Target Start/End: Original strand, 30802354 - 30802608
Alignment:
Q  10 tcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaattt 109  Q
    |||| |||||| || |||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||    
T  30802354 tcttaccattgttgtcatgcatctagtgttgtccttccaatacttgttgaagtatgatgagcgtcattccaaatgacatcattacgtgcaacccaaattt 30802453  T
Q  110 gctagagaagtaaagccacccgaccagaaatgtctcggctttctgaataacatatgtcaaaaacaaaatctgccaaactgctctcatttccaactcgcgt 209  Q
    || | |||||||||| ||||| ||||  ||||||||| |||| |||| ||||||||| ||||||||||||| ||||||| |||||| |||||||||| ||    
T  30802454 gccaaagaagtaaagtcaccctaccaacaatgtctcgactttttgaacaacatatgttaaaaacaaaatcttccaaacttctctcaattccaactcgtgt 30802553  T
Q  210 atacagcacagacgaaagtcctgcccaataccaactttcacgcgccaccgtacaa 264  Q
     | ||| |||| |||||||||| || ||| |||||| |||||||||||| |||||    
T  30802554 ttgcagtacagtcgaaagtccttcctaatgccaactctcacgcgccaccttacaa 30802608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 7 - 258
Target Start/End: Original strand, 15606382 - 15606633
Alignment:
Q  7 acctcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaa 106  Q
    ||||| |||||||| ||||||| ||||||||  ||||| ||||| |||||||||||||||| | ||||||||||||| | ||||||||||||||||||||    
T  15606382 acctcctgccattgttgccatgaatctagtgatgtcctaccaatacttgttgaagtatgatgatcgtcattccaaataacatcattacgtgcagcccaaa 15606481  T
Q  107 tttgctagagaagtaaagccacccgaccagaaatgtctcggctttctgaataacatatgtcaaaaacaaaatctgccaaactgctctcatttccaactcg 206  Q
    ||||| | |||||||||||||||||||||| ||||||||| ||||| ||| ||||||||||||| ||||||| |||||||||||||  | | ||||||||    
T  15606482 tttgccaaagaagtaaagccacccgaccagcaatgtctcgactttcagaacaacatatgtcaaagacaaaatttgccaaactgctcaaagtgccaactcg 15606581  T
Q  207 cgtatacagcacagacgaaagtcctgcccaataccaactttcacgcgccacc 258  Q
    ||  | |||||| | |||||| ||||||||||||||||  ||| ||||||||    
T  15606582 cgcttgcagcacggtcgaaagccctgcccaataccaacactcatgcgccacc 15606633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 7 - 264
Target Start/End: Original strand, 29368417 - 29368673
Alignment:
Q  7 acctcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaa 106  Q
    ||||||||||||||||| |||||||||||||| ||||| ||||||||  || | ||||||| | | ||||| ||| ||| |||||||||| |||||||||    
T  29368417 acctcttgccattgctgtcatgcatctagtgttgtcctcccaatgctcattcaggtatgatgaacatcatttcaagtgacatcattacgtccagcccaaa 29368516  T
Q  107 tttgctagagaagtaaagccacccgaccagaaatgtctcggctttctgaataacatatgtcaaaaacaaaatctgccaaactgctctcatttccaactcg 206  Q
    ||||| | |||||||||||||||||||||| ||||||||| |||||||||  |||||  |||||||||||||||| ||||||||||  | || |||||||    
T  29368517 tttgccaaagaagtaaagccacccgaccagcaatgtctcgactttctgaacgacatacatcaaaaacaaaatctgtcaaactgctcatagtttcaactcg 29368616  T
Q  207 cgtatacagcacagacgaaagtcctgcccaataccaactttcacgcgccaccgtacaa 264  Q
    ||  | |||||||| ||||| ||||| |||||||||||| ||| | ||||| ||||||    
T  29368617 cggttgcagcacagtcgaaa-tcctggccaataccaactctcatgtgccactgtacaa 29368673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 7 - 257
Target Start/End: Original strand, 19364326 - 19364576
Alignment:
Q  7 acctcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaa 106  Q
    |||||| ||||||| || |||||||||||||| ||||| |||||||| ||||||||||||| | |||| ||| |||||| ||||||||||||||||||||    
T  19364326 acctctcgccattgttgtcatgcatctagtgttgtcctcccaatgctcgttgaagtatgatgaacgtcgttcaaaatgacatcattacgtgcagcccaaa 19364425  T
Q  107 tttgctagagaagtaaagccacccgaccagaaatgtctcggctttctgaataacatatgtcaaaaacaaaatctgccaaactgctctcatttccaactcg 206  Q
    ||||||| |||| |||||||| |||||||  ||||||| |||||||||||  |||||| | ||||| ||||| || |||||||||| || |||||||||     
T  19364426 tttgctaaagaaataaagccatccgaccaccaatgtcttggctttctgaacgacatatatgaaaaataaaatttgtcaaactgctcacagttccaactca 19364525  T
Q  207 cgtatacagcacagacgaaagtcctgcccaataccaactttcacgcgccac 257  Q
    ||  | || |||   |||||| || |||||||||||||| |||| ||||||    
T  19364526 cggttgcaacactatcgaaagcccagcccaataccaactctcacacgccac 19364576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 188
Target Start/End: Complemental strand, 14679965 - 14679783
Alignment:
Q  7 acctcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttga-agtatgataagcgtcattccaaatgatatcattacgtgcagcccaa 105  Q
    ||||||| ||||||  |||||||||||||||| |||||  ||||||| |||   |||||||| | | ||||||||||||| |||||||||||||| ||||    
T  14679965 acctctttccattgtggccatgcatctagtgttgtcctctcaatgctcgtttttagtatgatgatcatcattccaaatgacatcattacgtgcaggccaa 14679866  T
Q  106 atttgctagagaagtaaagccacccgaccagaaatgtctcggctttctgaataacatatgtcaaaaacaaaatctgccaaact 188  Q
    |||||  | ||||||||||||||||||||||  |||||||||||||||||   |||||| |||||||||||||||||||||||    
T  14679865 atttgtaaaagaagtaaagccacccgaccagctatgtctcggctttctgagcgacatatatcaaaaacaaaatctgccaaact 14679783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 17 - 264
Target Start/End: Original strand, 11732041 - 11732283
Alignment:
Q  17 attgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaatttgctagag 116  Q
    |||||| ||||||||||| ||| ||||| ||||||||  |||||||||| | | ||||||||| ||||| ||||||||||||||| ||||||| | | ||    
T  11732041 attgctcccatgcatctattgttgtcctcccaatgctcattgaagtatgttgaacgtcattcccaatgacatcattacgtgcagcacaaattttcgaaag 11732140  T
Q  117 aagtaaagccacccgaccagaaatgtctcggctttctgaataacatatgtcaaaaacaaaatctgccaaactgctctcatttccaactcgcgtatacagc 216  Q
    |||||||||||| ||||||  |||||||||||||||||||  ||||||     ||||||||  |   ||||||||| || |||||||||| |  | || |    
T  11732141 aagtaaagccactcgaccaacaatgtctcggctttctgaacgacatat-----aaacaaaacttattaaactgctcacaattccaactcgtggttgcaac 11732235  T
Q  217 acagacgaaagtcctgcccaataccaactttcacgcgccaccgtacaa 264  Q
    |||  |||||| | |||| |||||||||| ||||||||||||| ||||    
T  11732236 acattcgaaagccttgcctaataccaactctcacgcgccaccgcacaa 11732283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 7 - 108
Target Start/End: Complemental strand, 28106945 - 28106844
Alignment:
Q  7 acctcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaa 106  Q
    |||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||| |||||  |||||| |||||||  |||||||||||    
T  28106945 acctcttgccattgttgccatgcatctagtattgtccttccaatgcttgttgaagtatgataagcatcatttgaaatgacatcattatatgcagcccaaa 28106846  T
Q  107 tt 108  Q
    ||    
T  28106845 tt 28106844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 123 - 264
Target Start/End: Original strand, 30803042 - 30803182
Alignment:
Q  123 agccacccgaccagaaatgtctcggctttctgaataacatatgtcaaaaacaaaatctgccaaactgctctcatttccaactcgcgtatacagcacagac 222  Q
    |||||||| | ||| ||||||||| |||| |||| |||||||||| || ||||||||| ||||||| || |||  |||||||||||| | |||||||| |    
T  30803042 agccaccctatcagcaatgtctcgactttttgaacaacatatgtccaacacaaaatcttccaaacttctttcagatccaactcgcgtttgcagcacagtc 30803141  T
Q  223 gaaagtcctgcccaataccaactttcacgcgccaccgtacaa 264  Q
    |||||||||  |  || |||||| ||||||||||||||||||    
T  30803142 gaaagtcct-tcatatgccaactctcacgcgccaccgtacaa 30803182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 7e-58; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 7 - 188
Target Start/End: Complemental strand, 53496850 - 53496669
Alignment:
Q  7 acctcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaa 106  Q
    |||||||| ||||||||||||||||||||||| ||||| |||||||| |||||||| |||| ||| ||||||||||||| ||||||||||||||||||||    
T  53496850 acctcttgtcattgctgccatgcatctagtgttgtcctcccaatgctcgttgaagtgtgatgagcatcattccaaatgacatcattacgtgcagcccaaa 53496751  T
Q  107 tttgctagagaagtaaagccacccgaccagaaatgtctcggctttctgaataacatatgtcaaaaacaaaatctgccaaact 188  Q
    ||||| | ||||||||||| |||||||||| ||||||||| |||||||||  |||||| |||||||||||||| ||||||||    
T  53496750 tttgccaaagaagtaaagctacccgaccagcaatgtctcgactttctgaacgacatatatcaaaaacaaaatcagccaaact 53496669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 21 - 264
Target Start/End: Complemental strand, 55199312 - 55199069
Alignment:
Q  21 ctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaatttgctagagaagt 120  Q
    |||||||||||||||||| ||||| || |||||||||||||| |||| || |||||||||||||| ||||||||||||||||||||||||  | ||||||    
T  55199312 ctgccatgcatctagtgttgtcctcccgatgcttgttgaagtgtgatgagtgtcattccaaatgacatcattacgtgcagcccaaatttgtcaaagaagt 55199213  T
Q  121 aaagccacccgaccagaaatgtctcggctttctgaataacatatgtcaaaaacaaaatctgccaaactgctctcatttccaactcgcgtatacagcacag 220  Q
    |||||||||||||||| | |||||||  | || ||| ||||||||||||||||||||||||||||||| ||  || | |||||||| |  | ||||||||    
T  55199212 aaagccacccgaccagcagtgtctcgattatcggaacaacatatgtcaaaaacaaaatctgccaaactacttgcagtgccaactcgtgattgcagcacag 55199113  T
Q  221 acgaaagtcctgcccaataccaactttcacgcgccaccgtacaa 264  Q
     |||||| ||| ||| ||||||||| ||||| |||||| |||||    
T  55199112 tcgaaagccctacccgataccaactctcacgtgccaccatacaa 55199069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 9 - 166
Target Start/End: Complemental strand, 1070816 - 1070659
Alignment:
Q  9 ctcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaatt 108  Q
    |||||| |||||||  || ||||||||||  |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  1070816 ctcttgtcattgctatcaggcatctagtgatgtccttccaatgattgttgaagtatgatgagcgtcattccaaatgatatcattacgtgcaacccaaatt 1070717  T
Q  109 tgctagagaagtaaagccacccgaccagaaatgtctcggctttctgaataacatatgt 166  Q
     || | |||| ||||| ||||| ||||| |||||||||| |||||||| |||||||||    
T  1070716 ggccaaagaattaaagtcacccaaccagcaatgtctcggttttctgaacaacatatgt 1070659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 7 - 182
Target Start/End: Original strand, 36310877 - 36311050
Alignment:
Q  7 acctcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagcccaaa 106  Q
    |||||||||||||||||| ||| |||||||   |||||||| ||||||||||||||||||| || |||||||||||| | |||||||||| || ||||||    
T  36310877 acctcttgccattgctgcaatgtatctagttatgtccttccgatgcttgttgaagtatgatgagtgtcattccaaataacatcattacgtacaacccaaa 36310976  T
Q  107 tttgctagagaagtaaagccacccgaccagaaatgtctcggctttctgaataa-catatgtcaaaaacaaaatctgc 182  Q
    ||||  |   ||| |||||||||| ||||   ||||||||||||||| || || |||||  ||||||||||||||||    
T  36310977 tttgtca---aagaaaagccacccaaccaacgatgtctcggctttctaaacaagcatataacaaaaacaaaatctgc 36311050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 9 - 104
Target Start/End: Original strand, 42340659 - 42340754
Alignment:
Q  9 ctcttgccattgctgccatgcatctagtgtcgtccttccaatgcttgttgaagtatgataagcgtcattccaaatgatatcattacgtgcagccca 104  Q
    |||||||||||| || |||||||| | ||| |||||||||||||||||| |||||||||  || ||||||||||||| |||||| |||||||||||    
T  42340659 ctcttgccattgttgtcatgcatccattgttgtccttccaatgcttgttcaagtatgatgggcatcattccaaatgacatcattgcgtgcagccca 42340754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 264
Target Start/End: Complemental strand, 53496657 - 53496606
Alignment:
Q  213 cagcacagacgaaagtcctgcccaataccaactttcacgcgccaccgtacaa 264  Q
    |||||||| |||||| ||||||||||||||||| ||| |||| |||||||||    
T  53496657 cagcacagtcgaaagccctgcccaataccaactctcatgcgctaccgtacaa 53496606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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