View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4848_high_13 (Length: 227)
Name: NF4848_high_13
Description: NF4848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4848_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 36893122 - 36893342
Alignment:
| Q |
1 |
cttgtgccacaacacttcattttcagaaacaacagcagtggcaaaacatcaagagaaattttcaagaaaacacacaaaggtcttataaaagacagtagcg |
100 |
Q |
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| T |
36893122 |
cttgtgccacaacacttcattttcagaaacaacagcagtggcaaaacatcaagagaaattttcaagaaaacacacaaaggtcttataaaagacagtagcg |
36893221 |
T |
|
| Q |
101 |
aatggctaaaagacacatcggaatcctgctctgttgtatctgcccttgtagctggtgtttcctttgccacagcaagcgctgtacctggcggcacaactga |
200 |
Q |
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| T |
36893222 |
aatggctaaaagacacatcggaatcctgctctgttgtatctgcccttgtagctggtgtttcctttgccacagcaagcgctgtacctggcggcacaactga |
36893321 |
T |
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| Q |
201 |
tcaaggtagaccggtattaga |
221 |
Q |
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||||||||||||||||||||| |
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| T |
36893322 |
tcaaggtagaccggtattaga |
36893342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 36883119 - 36883339
Alignment:
| Q |
1 |
cttgtgccacaacacttcattttcagaaacaacagcagtggcaaaacatcaagagaaattttcaagaaaacacacaaaggtcttataaaagacagtagcg |
100 |
Q |
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||||| |||||||||||| || |||| ||||| || |||||||||||||| ||||||||||||| ||||||| || ||||||| |||| || ||| |
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| T |
36883119 |
cttgtaccacaacacttctactttagaagcaacaacaagggcaaaacatcaagtgaaattttcaagacaacacacgaaaatcttatacaagagagcagca |
36883218 |
T |
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| Q |
101 |
aatggctaaaagacacatcggaatcctgctctgttgtatctgcccttgtagctggtgtttcctttgccacagcaagcgctgtacctggcggcacaactga |
200 |
Q |
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| T |
36883219 |
gttggctaaaagacacgtcagaatcctgctccgtcgtatctggccttgtagccggtgtttcctttgccacagcaagccaagtacctggcggcacaaccga |
36883318 |
T |
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| Q |
201 |
tcaaggtagaccggtattaga |
221 |
Q |
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| |||| || || |||||||| |
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| T |
36883319 |
tgaaggcagtccagtattaga |
36883339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 77 - 200
Target Start/End: Original strand, 36903003 - 36903126
Alignment:
| Q |
77 |
aaggtcttataaaagacagtagcgaatggctaaaagacacatcggaatcctgctctgttgtatctgcccttgtagctggtgtttcctttgccacagcaag |
176 |
Q |
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||||||||||||||||||| | |||||||||||| ||||| | || |||||||| |||||| | || ||||| ||||||| |||||| ||||| |||| |
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| T |
36903003 |
aaggtcttataaaagacagcaatgaatggctaaaaaacacagcagattcctgctcggttgtagccgcgcttgtcgctggtgcttccttcaccacaacaag |
36903102 |
T |
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| Q |
177 |
cgctgtacctggcggcacaactga |
200 |
Q |
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|| ||||||||||| |||||||| |
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| T |
36903103 |
tgcagtacctggcggaacaactga |
36903126 |
T |
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