View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4848_high_9 (Length: 250)
Name: NF4848_high_9
Description: NF4848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4848_high_9 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 1832308 - 1832075
Alignment:
| Q |
17 |
agctttgaatgcattgattttctgcaattccttctccgcaagctgtgaaatgaaaagggaaatgaacattcgacggttaaactgactaatgaaagatatt |
116 |
Q |
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| T |
1832308 |
agctttgaatgcattgattttctgcaattccttctccgcaagctgtgaaatgaaaagggaaatgaatattcgacggttaaactgactaatgaaagatttt |
1832209 |
T |
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| Q |
117 |
caaggatcaaactcactaaagaaagatatattcatgaatatttttgtaaatttgacagatttaaagaccatagtgacaatgtttgacacattcaagaata |
216 |
Q |
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| T |
1832208 |
taaggatcaaactcactaaagaaagatatattcatgaatatttttgtaaatttgacagatttaaagaccacagtgacaatgtttgacacattcaagaata |
1832109 |
T |
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| Q |
217 |
tggttatattatgtctaggaatcaaaccctaact |
250 |
Q |
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| T |
1832108 |
tggttatattatgtctaggaatcaaaccctaact |
1832075 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 211
Target Start/End: Original strand, 7713662 - 7713754
Alignment:
| Q |
119 |
aggatcaaactcactaaagaaagatatattcatgaatatttttgtaaatttgacagatttaaagaccatagtgacaatgtttgacacattcaa |
211 |
Q |
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| T |
7713662 |
aggaccaaactcggtaaagaaagatacattcaagaatatttttgcaattttgatacaatcaaggattatagtgacaatgcttgacacattcaa |
7713754 |
T |
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