View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4848_low_1 (Length: 455)
Name: NF4848_low_1
Description: NF4848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4848_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 11789557 - 11789912
Alignment:
| Q |
1 |
atacacagtcaaagataatactccattcatttcatggctttctagtggggacaaattggtaggtcctcatctcaacgtcactcactcataggtacatttg |
100 |
Q |
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| T |
11789557 |
atacacagtcaaagataatactccattcatttcatggctttctagtggggacaaactggtaggtcctcatctcaacgtcactcactcataggtacatttg |
11789656 |
T |
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| Q |
101 |
ttacgcaagtttaatggcaagcattacttttgtaatacttgtttgctaagcagaaatatccttcgcccaacttatagattgtgtagaagtgtggtttaat |
200 |
Q |
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| T |
11789657 |
ttacgcaagtttaatggcaagcattaattttgtaatacttgtttgttaagcagaaatatccctcgcccaacttatagattgtgtagaagtgtggtttaat |
11789756 |
T |
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| Q |
201 |
taagttgtaggcacaaattctatggtctagtatgcgctaaacataaaatgcatggaaaactaaaagggggaaagaagaacaatcttatgctaagcaataa |
300 |
Q |
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| T |
11789757 |
taagctgtaggcacaaattctatggtctagtatgtgctaaacataaagtgtatggaaaactaaaa-ggggaaagaagaacaatcttatgctaagcaataa |
11789855 |
T |
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| Q |
301 |
gagattaaaatgaattatattaattaatgtctgatagattaagcataaggagtgtcg |
357 |
Q |
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| T |
11789856 |
gagattaaaatgaattatattaattaatgtgtgatagattaagcataaggagtgtcg |
11789912 |
T |
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