View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4848_low_10 (Length: 239)
Name: NF4848_low_10
Description: NF4848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4848_low_10 |
 | |
|
| [»] scaffold0287 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 3639641 - 3639421
Alignment:
| Q |
1 |
ttatcaatcacttttgtgcaatatgatcaggttatagagatgataaacaaatcgtgcaccatgataattagtctttgttactagttaagacatagttaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3639641 |
ttatcaatcacttttgtgcaatatgatcaggttatagagatgataaacaaatcgtgcaccatgataattagtctttgttactagttaagacatagttaca |
3639542 |
T |
|
| Q |
101 |
tatgataaagttattaactcagttctaaacgcaaagcaaaagaaaacgattataagaagttttcacaactatttcagaatcatcagaaatagataaggct |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3639541 |
tatgata--gttattaactcagttctaaacgcaaagcaaaagaaaacgattataagaagttttcacaactatttcagaatcatcagaaatagataaggct |
3639444 |
T |
|
| Q |
201 |
cttttaatttgagcttgactata |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
3639443 |
cttttaatttgagcttgactata |
3639421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 4 - 223
Target Start/End: Complemental strand, 3645921 - 3645703
Alignment:
| Q |
4 |
tcaatcacttttgtgcaatatgatcaggttatagagatgataaacaaatcgtgcaccatgataattagtctttgttactagttaagacatagttacatat |
103 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3645921 |
tcaatcacttttgttcaatatgatcaggttatagagatgataaa--aatcgtgcaccatgataattagtctttgttactagttaagacatagttacatat |
3645824 |
T |
|
| Q |
104 |
gataaagttattaactcagttctaaacgcaaa-gcaaaagaaaacgattataagaagttttcacaactatttcagaatcatcagaaatagataaggctct |
202 |
Q |
| |
|
||||| ||||||||||||||||||||| |||| || |||||||||||| ||| |||||||| |||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
3645823 |
gataaggttattaactcagttctaaacacaaaggcgaaagaaaacgataatatgaagttttaacaactatgtgagaatcatcagaaatagataaggctct |
3645724 |
T |
|
| Q |
203 |
tttaatttgagcttgactata |
223 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
3645723 |
tttaatttgagcttgactata |
3645703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 22 - 130
Target Start/End: Complemental strand, 3658984 - 3658875
Alignment:
| Q |
22 |
tatgatcaggttatagagatgataaacaaatcgtgcaccatgataattagtct-ttgttactagttaagacatagttacatatgataaagttattaactc |
120 |
Q |
| |
|
|||| ||| ||||||||||||| ||| |||| |||||||||||||| |||||| ||||||||||||| | || ||||| |||||||| ||||||||||| |
|
|
| T |
3658984 |
tatggtcaagttatagagatgacaaaaaaattgtgcaccatgataactagtctgttgttactagttagggcactgttacgtatgataatgttattaactc |
3658885 |
T |
|
| Q |
121 |
agttctaaac |
130 |
Q |
| |
|
||||| |||| |
|
|
| T |
3658884 |
agttccaaac |
3658875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 54 - 135
Target Start/End: Complemental strand, 3637222 - 3637140
Alignment:
| Q |
54 |
gtgcaccatgataattagtct-ttgttactagttaagacatagttacatatgataaagttattaactcagttctaaacgcaaa |
135 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||| ||| || ||| ||||||| |||||||||||||||| |||| |||| |
|
|
| T |
3637222 |
gtgcaccatgataattagcctattgttactagttaaggcattgtcacacatgataaggttattaactcagttccaaacacaaa |
3637140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 3650923 - 3650843
Alignment:
| Q |
36 |
agagatgataaacaaatcgtgcaccatgataattagtct-ttgttactagttaagacatagttacatatgataaagttatt |
115 |
Q |
| |
|
|||||||| |||||||| |||||||||||||| |||||| ||||| || |||| | ||| |||||||||||||| |||||| |
|
|
| T |
3650923 |
agagatgacaaacaaattgtgcaccatgataactagtctgttgttgcttgttagggcattgttacatatgataaggttatt |
3650843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 3652812 - 3652764
Alignment:
| Q |
26 |
atcaggttatagagatgataaacaaatcgtgcaccatgataattagtct |
74 |
Q |
| |
|
|||| ||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
3652812 |
atcaagttatagagatgacaaacaaattgtgcaccatgataattagtct |
3652764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 3706614 - 3706694
Alignment:
| Q |
36 |
agagatgataaacaaatcgtgcaccatgataattagtct-ttgttactagttaagacatagttacatatgataaagttatt |
115 |
Q |
| |
|
|||||||| |||||||| |||||||||||||| |||||| ||||| || |||| | ||| |||||||||||||| |||||| |
|
|
| T |
3706614 |
agagatgacaaacaaattgtgcaccatgataactagtctgttgttgcttgttagggcattgttacatatgataaggttatt |
3706694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 223
Target Start/End: Complemental strand, 3650363 - 3650280
Alignment:
| Q |
140 |
aagaaaacgattataagaagttttcacaactatttcagaatcatcagaaatagataaggctcttttaatttgagcttgactata |
223 |
Q |
| |
|
||||||| | |||||||||||||| || | | ||||||| |||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
3650363 |
aagaaaatggttataagaagttttactaattgtgtcagaattatcagaaatagataaggctcttttaaagtgagcttaactata |
3650280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0287 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 54 - 135
Target Start/End: Original strand, 8863 - 8945
Alignment:
| Q |
54 |
gtgcaccatgataattagtct-ttgttactagttaagacatagttacatatgataaagttattaactcagttctaaacgcaaa |
135 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||| ||| || ||| ||||||| |||||||||||||||| |||| |||| |
|
|
| T |
8863 |
gtgcaccatgataattagcctattgttactagttaaggcattgtcacacatgataaggttattaactcagttccaaacacaaa |
8945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University