View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4848_low_2 (Length: 410)
Name: NF4848_low_2
Description: NF4848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4848_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 24270065 - 24269832
Alignment:
| Q |
1 |
cgtaatcttctttgggcaaccactggttctcgtaagtaacatcttttaattaaactttcatnnnnnnnnnnnnnnnnnttaatttttgttgataaggatt |
100 |
Q |
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| T |
24270065 |
cgtaatcttctttgggcaaccactggttctcgtaagtaacagcttttaattaaactttcataaaaaaaa---------ttaatttttgttgataagaatt |
24269975 |
T |
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| Q |
101 |
atagaattatgattatgttgatgtgggttttttgtgggtgaagctttgatcccgttgtcggagtttcgtgagaagaacgttgtgcaccagtatgaagtgg |
200 |
Q |
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| T |
24269974 |
ataggattatgattatgttgatgtgggtt-----------aagctttgatcccgttgtcggagtttcgtgagaagaacgtggtgcaccagtatgaagtgg |
24269886 |
T |
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| Q |
201 |
accctgatgctgaggttttggacatacttgatactgcttctagacagaaacagg |
254 |
Q |
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| T |
24269885 |
accctgatgctgaggttttggacatacttgatactgcttctagacagaaacagg |
24269832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 323 - 398
Target Start/End: Complemental strand, 24269748 - 24269673
Alignment:
| Q |
323 |
acttaagttgaattgtgtataggtgactgtggtggggaaggtatactggggagatgcaagagagaaaattgttgat |
398 |
Q |
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| T |
24269748 |
acttaagttgaattgtgtataggtgactgtggtggggaaggtatactggggagatgcaagagagaaaattgttgat |
24269673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 83 - 254
Target Start/End: Complemental strand, 51856182 - 51856018
Alignment:
| Q |
83 |
tttttgttgataaggattatagaattatgattatgttgatgtgggttttttgtgggtgaagctttgatcccgttgtcggagtttcgtgagaagaacgttg |
182 |
Q |
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| T |
51856182 |
tttttgttaataaggatattagaattatgattatgttgatgagggttttttatgggtgaagctctgatcccgttgtcggagttttgtgagaagaacatga |
51856083 |
T |
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| Q |
183 |
tgcaccagtatgaagtggaccctgatgctgaggttttggaca-tacttgatactgcttctagacagaaacagg |
254 |
Q |
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| T |
51856082 |
tg--------tgaggtggaccttgacgctgaggttttggacattacttgatgctgcttctagacaaaaacagg |
51856018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 83 - 254
Target Start/End: Complemental strand, 8945368 - 8945204
Alignment:
| Q |
83 |
tttttgttgataaggattatagaattatgattatgttgatgtgggttttttgtgggtgaagctttgatcccgttgtcggagtttcgtgagaagaacgttg |
182 |
Q |
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| T |
8945368 |
tttttgttaataaggatattagaattatgattatgttgatgagggttttttatgggtgaagctctgatctcgttgtcggagtttcgtgagaagaacat-- |
8945271 |
T |
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| Q |
183 |
tgcaccagtatgaagtggaccctgatgctgaggttttggaca-tacttgatactgcttctagacagaaacagg |
254 |
Q |
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| | ||| || |||| ||| |||||||||||||||| |||||||| ||||||||||||| ||||||| |
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| T |
8945270 |
------aatgtgaggttgaccttgacgctgaggttttggacattacttgatgctgcttctagacaaaaacagg |
8945204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 163 - 252
Target Start/End: Original strand, 13604497 - 13604586
Alignment:
| Q |
163 |
gtttcgtgagaagaacgttgtgcaccagtatgaagtggaccctgatgctgaggttttggacatacttgatactgcttctagacagaaaca |
252 |
Q |
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|||| ||||||||||| | |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
13604497 |
gttttgtgagaagaacatggtgcaccagtatgaagtggaacttgatgctgaggttttggacatacttgatactgcttctagatagaaaca |
13604586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 323 - 398
Target Start/End: Original strand, 13604690 - 13604765
Alignment:
| Q |
323 |
acttaagttgaattgtgtataggtgactgtggtggggaaggtatactggggagatgcaagagagaaaattgttgat |
398 |
Q |
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|||||||| |||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| ||||||||| |
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| T |
13604690 |
acttaagtcgaattgtgtataggtgactgtggtggctaaggtatattggggtgatgcaagagagaagattgttgat |
13604765 |
T |
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