View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4848_low_3 (Length: 388)
Name: NF4848_low_3
Description: NF4848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4848_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 16 - 385
Target Start/End: Original strand, 36892655 - 36893024
Alignment:
| Q |
16 |
agaaggacaatgaaaaggaaatcaagaaaaagatgacaccatttttggatgcagcaaaaaatggaatagttgaaatggttaacgaaattctaataaaaat |
115 |
Q |
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| T |
36892655 |
agaaggaaaatgaaaaggaaatcaagaaaaagatgacaccatttttggttgcagcaaaaaatggaatagttgaaatggttaacgaaattctaataaaagt |
36892754 |
T |
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| Q |
116 |
accaagtgccattcataacactacctcaagaaaagaaaatgtattgcttgttgcagtcaaatacaggcaacctcttattgttgagaccttgagaatgatt |
215 |
Q |
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| T |
36892755 |
accaagtgccattcataacactacctcaagaaaagaaaatgtattgcttgttgcagtcaaatacaggcaacctcttattgttgagaccttgagaatgatt |
36892854 |
T |
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| Q |
216 |
aagcattcaaaaccagaactttggaataatttgattcttgcaatggatgaggatgagaatacagtattgcatttggcagcagaggcattaggtggtgata |
315 |
Q |
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| T |
36892855 |
aagcattcaaaaccagaactttggaataatttgattcttgcaatggatgaggatgagaatacagtattgcatttggcagccgaggcattaggtggtgata |
36892954 |
T |
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| Q |
316 |
aaccttggcagattgctggttctgccttgcaaatgatgtgggatataaaatggtttcaggtacataaaat |
385 |
Q |
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| T |
36892955 |
aaccttggcagattgctggttctgccttgcaaatgatgtgggatataaaatggtttcaggtacataaaat |
36893024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 50 - 381
Target Start/End: Original strand, 36881599 - 36881936
Alignment:
| Q |
50 |
gacaccatttttggatgcagcaaaaaatggaatagttgaaatggttaacgaaattctaataaaaataccaagtgccattcataacactacctcaagaaaa |
149 |
Q |
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| T |
36881599 |
gacaccatttttggttgcagcgaaaaatggaatagttgaactggttaacgaatttctagacaaaattccaagtgccattcatgacacaaactcaaggaaa |
36881698 |
T |
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| Q |
150 |
gaaaatgtattgcttgttgcagtcaaatacaggcaacctcttattgttgagaccttgag------aatgattaagcattcaaaaccagaactttggaata |
243 |
Q |
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| T |
36881699 |
gaaaatgtattgcatgttgcagtgaagtcaagacaacccgttattgttgagacattgagaatgagaatgattaagcactcaaaaccagaactttggaata |
36881798 |
T |
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| Q |
244 |
atttgattcttgcaatggatgaggatgagaatacagtattgcatttggcagcagaggcattaggtggtgataaaccttggcagattgctggttctgcctt |
343 |
Q |
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| T |
36881799 |
acttaattcttgcaatggataaggaggagaatacaatattgcatttggcagcaaaggcactaggtgatggtaaaccttggcagattgctggttctgcctt |
36881898 |
T |
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| Q |
344 |
gcaaatgatgtgggatataaaatggtttcaggtacata |
381 |
Q |
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| T |
36881899 |
acaaatgatgtgggatataaaatggtttcaggtacata |
36881936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 232 - 381
Target Start/End: Original strand, 36901989 - 36902141
Alignment:
| Q |
232 |
aactttggaataatttgattcttgcaatggatgaggatgagaatacagtattgcatttggcagcagaggcattaggtggtgataaaccttggcag---at |
328 |
Q |
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|||||||||||| ||| ||||||||| |||||| | |||||||| ||||||||||||||||||||||| || || |||||||||| | ||| || |
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| T |
36901989 |
aactttggaatagcttggttcttgcaaaggatgataagcagaatacaatattgcatttggcagcagaggcacaagctgttgataaacctggacagaatat |
36902088 |
T |
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| Q |
329 |
tgctggttctgccttgcaaatgatgtgggatataaaatggtttcaggtacata |
381 |
Q |
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| T |
36902089 |
tgctaggtctgcattacaaatgatgtgggatatgaaatggtttcaggtacata |
36902141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 182
Target Start/End: Original strand, 36901716 - 36901846
Alignment:
| Q |
52 |
caccatttttggatgcagcaaaaaatggaatagttgaaatggttaacgaaattctaataaaaataccaagtgccattcataacactacctcaagaaaaga |
151 |
Q |
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| T |
36901716 |
caccaattttggttgcagctagaaatggcatatatgaaatggtgaaagaaattctaatcgaagcaccaactgccctccgtagtactaactcaagcaaaca |
36901815 |
T |
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| Q |
152 |
aaatgtattgcttgttgcagtcaaatacagg |
182 |
Q |
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| T |
36901816 |
aaatgtattgcttgttgcagtagaatacagg |
36901846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 331 - 377
Target Start/End: Original strand, 23278833 - 23278879
Alignment:
| Q |
331 |
ctggttctgccttgcaaatgatgtgggatataaaatggtttcaggta |
377 |
Q |
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| T |
23278833 |
ctggtgctgccttgcaaatgatgtggcatataaaatggtttcaggta |
23278879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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