View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4849-Insertion-3 (Length: 740)

Name: NF4849-Insertion-3
Description: NF4849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4849-Insertion-3
NF4849-Insertion-3
[»] chr5 (2 HSPs)
chr5 (206-740)||(5713589-5714125)
chr5 (6-101)||(5714229-5714324)


Alignment Details
Target: chr5 (Bit Score: 458; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 206 - 740
Target Start/End: Complemental strand, 5714125 - 5713589
Alignment:
Q  206 agtccaaatggaatatcctattacaccatgcaatatcaagtttatttggagtgtcatcaaaattcaaaataaaacaatttattgctgccattcagtagtt 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5714125 agtccaaatggaatatcctattacaccatgcaatatcaagtttatttggagtgtcatcaaaattcaaaataaaacaatttattgctgccattcagtagtt 5714026  T
Q  306 ggctacatacataccggtctttgctcaaaaggaacttcaatttccaacccaggatcccagctacctcctgaagatccacttgtttctccattcatctcac 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5714025 ggctacatacataccggtctttgctcaaaaggaacttcaatttccaacccaggatcccagctacctcctgaagatccacttgtttctccattcatctcac 5713926  T
Q  406 cttttacggccttaactttaatggaaacctgttgagaaaattttgaagctcttggattttggatgatgaacgaaccatggttgcttcctggtttagtttg 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5713925 cttttacggccttaactttaatggaaacctgttgagaaaattttgaagctcttggattttggatgatgaacgaaccatggttgcttcctggtttagtttg 5713826  T
Q  506 tcttgcagttggaattagagaacagtgaaaatttagtctaatcatttgcttgttgaattttaatagtaagcatataactaaac----nnnnnnnnnnnnc 601  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                |    
T  5713825 tcttgcagttggaattagagaacagtgaaaatttagtctaatcatttgcttgttgaattttaatagtaagcatataactaaaccaaaaaaaaaaaaaaac 5713726  T
Q  602 aaggtggtgttcaattctttactgagagaaaggaagaggaggaaagaattgatattatgcactgattagaaccaattattttgtaattatttttgtgtct 701  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  5713725 aaggtggtgttcaattctttactgggag-aaggaagaggaggaaagaattgatattatgcactgattaaaaccaatta-tttgtaattatttttgtgtct 5713628  T
Q  702 tcgtaccaggaccacataaattatttacctgtaggaggg 740  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  5713627 tcgtaccaggaccacataaattatttacgtgtaggaggg 5713589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 6 - 101
Target Start/End: Complemental strand, 5714324 - 5714229
Alignment:
Q  6 cagggatatgaaactcactaactgtcatgctttctgatggctaggttcagccatgaaattcaatattcatactctaatattacacataattcaata 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5714324 cagggatatgaaactcactaactgtcatgctttctgatggctaggttcagccatgaaattcaatattcatactctaatattacacataattcaata 5714229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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