View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4849-Insertion-4 (Length: 694)

Name: NF4849-Insertion-4
Description: NF4849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4849-Insertion-4
NF4849-Insertion-4
[»] chr2 (5 HSPs)
chr2 (202-694)||(2279740-2280225)
chr2 (306-373)||(8962078-8962145)
chr2 (187-247)||(23988564-23988624)
chr2 (196-246)||(29100275-29100325)
chr2 (189-241)||(8962212-8962264)
[»] chr1 (9 HSPs)
chr1 (190-694)||(4108259-4108760)
chr1 (187-317)||(48911952-48912081)
chr1 (260-331)||(16264078-16264149)
chr1 (182-247)||(49303960-49304025)
chr1 (184-231)||(3899001-3899048)
chr1 (187-246)||(16264001-16264060)
chr1 (184-231)||(50501555-50501602)
chr1 (187-241)||(40042883-40042937)
chr1 (306-373)||(40042748-40042818)
[»] chr3 (9 HSPs)
chr3 (392-672)||(27948502-27948782)
chr3 (184-319)||(27948347-27948485)
chr3 (191-240)||(21980574-21980623)
chr3 (191-240)||(22003005-22003054)
chr3 (290-353)||(21220476-21220539)
chr3 (261-331)||(50035676-50035746)
chr3 (264-344)||(21980649-21980729)
chr3 (264-344)||(22003080-22003160)
chr3 (182-230)||(48906717-48906765)
[»] chr4 (7 HSPs)
chr4 (8-183)||(39215639-39215814)
chr4 (290-373)||(43527539-43527622)
chr4 (196-331)||(56395789-56395925)
chr4 (262-370)||(5827390-5827500)
chr4 (184-232)||(52912265-52912313)
chr4 (182-236)||(5827514-5827568)
chr4 (178-223)||(31181817-31181862)
[»] chr5 (9 HSPs)
chr5 (182-353)||(18924365-18924537)
chr5 (264-344)||(29372196-29372276)
chr5 (259-344)||(7509647-7509732)
chr5 (187-333)||(35471538-35471684)
chr5 (260-320)||(41196379-41196439)
chr5 (198-247)||(36151715-36151764)
chr5 (266-333)||(36151622-36151689)
chr5 (187-246)||(41196307-41196366)
chr5 (196-245)||(16050484-16050533)
[»] chr7 (21 HSPs)
chr7 (262-370)||(26048886-26048996)
chr7 (260-333)||(46409214-46409287)
chr7 (184-241)||(32838199-32838256)
chr7 (187-247)||(1503279-1503339)
chr7 (262-333)||(1503191-1503262)
chr7 (260-331)||(6483876-6483947)
chr7 (182-241)||(26048804-26048863)
chr7 (260-331)||(37997744-37997815)
chr7 (266-333)||(47491479-47491546)
chr7 (261-331)||(33142238-33142308)
chr7 (187-241)||(35240596-35240650)
chr7 (187-247)||(37997834-37997894)
chr7 (260-378)||(328904-329025)
chr7 (187-246)||(2946758-2946817)
chr7 (260-331)||(2946834-2946905)
chr7 (182-223)||(2704808-2704849)
chr7 (187-247)||(6483806-6483866)
chr7 (319-376)||(32838331-32838390)
chr7 (459-511)||(32838432-32838484)
chr7 (184-232)||(35836999-35837047)
chr7 (183-231)||(37625632-37625680)
[»] chr8 (6 HSPs)
chr8 (260-333)||(7217013-7217086)
chr8 (262-333)||(2706901-2706972)
chr8 (187-246)||(35971962-35972021)
chr8 (184-241)||(2706821-2706878)
chr8 (196-241)||(14109669-14109714)
chr8 (260-333)||(35971876-35971949)
[»] chr6 (2 HSPs)
chr6 (187-324)||(26420652-26420789)
chr6 (260-331)||(14799827-14799898)
[»] scaffold0015 (1 HSPs)
scaffold0015 (260-333)||(35698-35771)


Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 202 - 694
Target Start/End: Complemental strand, 2280225 - 2279740
Alignment:
Q  202 agacttgaataggtctcctacgataggagatattaaaaaatactgannnnnnnnnnngtataacaaaaatgacacttgtcgctgttatattgacgaagaa 301  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||||           ||||||||||||||| ||||||| | |||||||||||||||||    
T  2280225 agacttgaataagtctcctacggtaggagacattaaaaaatactgattttttttt--gtataacaaaaatgaaacttgtcaccgttatattgacgaagaa 2280128  T
Q  302 cattgatcttactataatccctccacactagaatatttttcactttcttcaatctccaaactaaaacaaccccagcagcnnnnnnnnnnngaacgcattt 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||           ||||||||||    
T  2280127 cattgatcttactataatccctccacactagaatatttttcactttcttcaatctccaaactaaaacaacctcagcagcaaaaaaa----gaacgcattt 2280032  T
Q  402 tcttcttctttccgttctgaattctcttccgccgccgaaaacctcctccgtccaaccctccgtcaatttcttgcacctcaacctccctttctctttccct 501  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2280031 tcctcttctttccgttctgaattctcttccgccgccgaaaacctcctccgtccaaccctccgtcaatttcttccacctcaacctccctttctctttccct 2279932  T
Q  502 tacctccgtctccaccactatgtttttcatcctcgtcctcaaatctcaccctcacctccgcccgctcgctccaccatccacaaccaccatcgtccccgtc 601  Q
    ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  2279931 tacatccgtctccaccaccatgtttttcatcctcgtcctcaaatctcaccctcacctccg-ccgctcgttccaccatccacaaccaccatcgtccccgtc 2279833  T
Q  602 gaaatctgaagaaatccgccgttgtaatatttctttgatctgggtagatctaagagagaggt-gatggaggcaaagacggtggcggcgacacac 694  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||    
T  2279832 gaaatctgaagaaatccgtcgttgtaatatttctttgatctgggtatatct-agagagaggtggatggaggcaaagacggtggcggcgacacac 2279740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 306 - 373
Target Start/End: Complemental strand, 8962145 - 8962078
Alignment:
Q  306 gatcttactataatccctccacactagaatatttttcactttcttcaatctccaaactaaaacaaccc 373  Q
    |||||||||||||||| || |||||| ||| ||||||||||||||||| |||  ||||||| ||||||    
T  8962145 gatcttactataatccttcaacactataatttttttcactttcttcaacctctcaactaaaccaaccc 8962078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 23988564 - 23988624
Alignment:
Q  187 gccgttttcggtaggagacttgaataggtctcctacgataggagatattaaaaaatactga 247  Q
    |||||||  |||||||||||||||||||||||| |||  |||||| ||||||||| |||||    
T  23988564 gccgtttatggtaggagacttgaataggtctcccacgggaggagaaattaaaaaagactga 23988624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 196 - 246
Target Start/End: Original strand, 29100275 - 29100325
Alignment:
Q  196 ggtaggagacttgaataggtctcctacgataggagatattaaaaaatactg 246  Q
    |||||||||||||||||||||||| |||  |||||| ||||||||| ||||    
T  29100275 ggtaggagacttgaataggtctcccacgggaggagacattaaaaaaaactg 29100325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 8962264 - 8962212
Alignment:
Q  189 cgttttcggtaggagacttgaataggtctcctacgataggagatattaaaaaa 241  Q
    ||||| ||||||||||||| ||||||||||||||  ||||||| |||| ||||    
T  8962264 cgtttccggtaggagacttaaataggtctcctactgtaggagacattataaaa 8962212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 190 - 694
Target Start/End: Complemental strand, 4108760 - 4108259
Alignment:
Q  190 gttttcggtaggagacttgaataggtctcctacgataggagatattaaaaaatactgannnnnnnnnnn-gtataacaaaaatgacacttgtcgctgtta 288  Q
    |||||||| ||||||||| ||||||||||||||| ||||||| ||||||||||| | |            ||||||||||||||||||||||| | ||||    
T  4108760 gttttcggcaggagacttaaataggtctcctacggtaggagacattaaaaaatattaattttttttttttgtataacaaaaatgacacttgtcaccgtta 4108661  T
Q  289 tattgacgaagaacattgatcttactataatccctccacactagaatatttttcactttcttcaatctccaaactaaaacaaccccagcagcnnnnnnnn 388  Q
     ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||            
T  4108660 gattgatgaagaacattgatcttactataatccctccacactaaaatatttttcactttcttcaatctccaaactaaaacaaccccagctgcaaaaaaa- 4108562  T
Q  389 nnngaacgcattttcttcttctttccgttctgaattctcttccgccgccgaaaacctcctccgtccaaccctccgtcaatttcttgcacctcaacctccc 488  Q
       ||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  4108561 ---gaacgcattttcttcttctttccgttctgaactctcttccaccgccaaaaacctcctccgtccaacccttcgtcaatttcttccacctcaacctccc 4108465  T
Q  489 tttctctttcccttacctccgtctccaccactatgtttttcatcctcgtcctcaaatctcaccctcacctccgcccgctcgctccaccatccacaaccac 588  Q
    ||||||||||||||||||||||| |||||||  |||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  4108464 tttctctttcccttacctccgtccccaccaccgtgttttccatcctcgtcctcaaatctcaccctcacctccg-ccgctcgctccaccgtccacaaccac 4108366  T
Q  589 catcgtccccgtcgaaatctgaagaaatccgccgttgtaatatttctttgatctgggtagatctaagagagaggt-gatggaggcaaagacggtggcggc 687  Q
    ||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||    
T  4108365 cattgtccctgtcgaaatctgaagaaatccaccgttgtaatatttctttgatctgggtagatataagagagaggtggatggaggcaaagacggtggtggc 4108266  T
Q  688 gacacac 694  Q
    |||||||    
T  4108265 gacacac 4108259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 317
Target Start/End: Complemental strand, 48912081 - 48911952
Alignment:
Q  187 gccgttttcggtaggagacttgaataggtctcctacgataggagatattaaaaaatactgannnnnnnnnnngtataacaaaaatgacacttgtcgctgt 286  Q
    ||||||| |||||||||||  |||||||||||||||  ||||||| ||||||||||  |||           ||||||||||||||||| ||||| |  |    
T  48912081 gccgtttccggtaggagacgagaataggtctcctactgtaggagacattaaaaaatggtgatttttttttt-gtataacaaaaatgacatttgtcaccat 48911983  T
Q  287 tatattgacgaagaacattgatcttactata 317  Q
    || ||||| ||||||||||||||||||||||    
T  48911982 tagattgatgaagaacattgatcttactata 48911952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 260 - 331
Target Start/End: Original strand, 16264078 - 16264149
Alignment:
Q  260 tataacaaaaatgacacttgtcgctgttatattgacgaagaacattgatcttactataatccctccacacta 331  Q
    ||||||||||||||||  ||| || |||| |||||||||||||| ||||||||| ||||||| || ||||||    
T  16264078 tataacaaaaatgacatgtgttgcggttagattgacgaagaacactgatcttaccataatccttctacacta 16264149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 49303960 - 49304025
Alignment:
Q  182 atggtgccgttttcggtaggagacttgaataggtctcctacgataggagatattaaaaaatactga 247  Q
    |||| |||||||  |||||||||||||||||| ||| | ||| ||||||||||||||||| |||||    
T  49303960 atggcgccgtttatggtaggagacttgaatagatcttccacggtaggagatattaaaaaagactga 49304025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 3899001 - 3899048
Alignment:
Q  184 ggtgccgttttcggtaggagacttgaataggtctcctacgataggaga 231  Q
    ||||||||||  |||||||||| ||||||||||||||||| |||||||    
T  3899001 ggtgccgtttaaggtaggagacgtgaataggtctcctacggtaggaga 3899048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 246
Target Start/End: Original strand, 16264001 - 16264060
Alignment:
Q  187 gccgttttcggtaggagacttgaataggtctcctacgataggagatattaaaaaatactg 246  Q
    |||||||  |||||||||||||||||||||||| |||  |||||| ||||||||| ||||    
T  16264001 gccgtttatggtaggagacttgaataggtctcccacgggaggagacattaaaaaagactg 16264060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 50501602 - 50501555
Alignment:
Q  184 ggtgccgttttcggtaggagacttgaataggtctcctacgataggaga 231  Q
    ||||||||||  |||||||||| ||||||||||||||||| |||||||    
T  50501602 ggtgccgtttaaggtaggagacgtgaataggtctcctacggtaggaga 50501555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 187 - 241
Target Start/End: Complemental strand, 40042937 - 40042883
Alignment:
Q  187 gccgttttcggtaggagacttgaataggtctcctacgataggagatattaaaaaa 241  Q
    |||||||||||||| ||| |||||||||||| ||||| ||||||| |||| ||||    
T  40042937 gccgttttcggtagtagatttgaataggtcttctacggtaggagacattataaaa 40042883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 306 - 373
Target Start/End: Complemental strand, 40042818 - 40042748
Alignment:
Q  306 gatcttactataatccctccacactagaatattttt---cactttcttcaatctccaaactaaaacaaccc 373  Q
    |||||||||||||||| ||||||||| ||| |||||   |||||||||||| |||  ||| ||||||||||    
T  40042818 gatcttactataatccttccacactataattttttttcacactttcttcaacctctcaaccaaaacaaccc 40042748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 392 - 672
Target Start/End: Original strand, 27948502 - 27948782
Alignment:
Q  392 gaacgcattttcttcttctttccgttctgaattctcttccgccgccgaaaacctcctccgtccaaccctccgtcaatttcttgcacctcaacctcccttt 491  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  27948502 gaacgcattttcttcttctttccgttttgaattctctttcgccgccgaaaacctcctccgtccaaccctccgtcattttcttccacctcaacctcccttt 27948601  T
Q  492 ctctttcccttacctccgtctccaccactatgtttttcatcctcgtcctcaaatctcaccctcacctccgcccgctcgctccaccatccacaaccaccat 591  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||    
T  27948602 ctctttcccttacctccgtctccaccaccatgtttttcatcctcgtcctcaaatctcaccctcacctccg-ctgctccctccaccatccacaaccaccat 27948700  T
Q  592 cgtccccgtcgaaatctgaagaaatccgccgttgtaatatttctttgatctgggtagatctaagagagaggt-gatggaggc 672  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  27948701 cgtccccgtcgaaatctgaagaaatccgccgttgtaatatttctttgatctgagtagatctaagagagaggtggatggaggc 27948782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 184 - 319
Target Start/End: Original strand, 27948347 - 27948485
Alignment:
Q  184 ggtgccgttttcggtaggagacttgaataggtctcctacgataggagatattaaaaaatactgannnnnnnnnnn---gtataacaaaaatgacacttgt 280  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||| | ||||||||||||| |              |||||| |||||||||||||||    
T  27948347 ggtgccgttttcggtagcagacttgaataggtctcctacggtaggaaacattaaaaaatactaattttttttttttttgtataataaaaatgacacttgt 27948446  T
Q  281 cgctgttatattgacgaagaacattgatcttactataat 319  Q
    | | |||||||||||||||||||||||||||||||||||    
T  27948447 caccgttatattgacgaagaacattgatcttactataat 27948485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 21980574 - 21980623
Alignment:
Q  191 ttttcggtaggagacttgaataggtctcctacgataggagatattaaaaa 240  Q
    |||||||||||||| || ||||||||||||||||||||||| ||||||||    
T  21980574 ttttcggtaggagatttaaataggtctcctacgataggagacattaaaaa 21980623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 22003005 - 22003054
Alignment:
Q  191 ttttcggtaggagacttgaataggtctcctacgataggagatattaaaaa 240  Q
    |||||||||||||| || ||||||||||||||||||||||| ||||||||    
T  22003005 ttttcggtaggagatttaaataggtctcctacgataggagacattaaaaa 22003054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 290 - 353
Target Start/End: Complemental strand, 21220539 - 21220476
Alignment:
Q  290 attgacgaagaacattgatcttactataatccctccacactagaatatttttcactttcttcaa 353  Q
    ||||| |||||||  |||||||| | |||||||||||||||||||| |||| ||||||||||||    
T  21220539 attgatgaagaacgctgatcttattgtaatccctccacactagaattttttacactttcttcaa 21220476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 261 - 331
Target Start/End: Original strand, 50035676 - 50035746
Alignment:
Q  261 ataacaaaaatgacacttgtcgctgttatattgacgaagaacattgatcttactataatccctccacacta 331  Q
    |||||||||||||||  ||| || |||| |||||||||||||| ||||||||| ||||||| || ||||||    
T  50035676 ataacaaaaatgacatgtgttgcggttagattgacgaagaacactgatcttaccataatccttctacacta 50035746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 264 - 344
Target Start/End: Original strand, 21980649 - 21980729
Alignment:
Q  264 acaaaaatgacacttgtcgctgttatattgacgaagaacattgatcttactataatccctccacactagaatatttttcac 344  Q
    |||||||||||| ||||| |  ||| ||||| |||||||| |||| ||||| ||||| |||||||||| ||| ||||||||    
T  21980649 acaaaaatgacatttgtcaccattagattgatgaagaacactgattttactgtaatctctccacactataatttttttcac 21980729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 264 - 344
Target Start/End: Original strand, 22003080 - 22003160
Alignment:
Q  264 acaaaaatgacacttgtcgctgttatattgacgaagaacattgatcttactataatccctccacactagaatatttttcac 344  Q
    |||||||||||| ||||| |  ||| ||||| |||||||| |||| ||||| ||||| |||||||||| ||| ||||||||    
T  22003080 acaaaaatgacatttgtcaccattagattgatgaagaacactgattttactgtaatctctccacactataatttttttcac 22003160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 48906765 - 48906717
Alignment:
Q  182 atggtgccgttttcggtaggagacttgaataggtctcctacgataggag 230  Q
    |||||||| |||  |||||||||| ||||||||||||||||| ||||||    
T  48906765 atggtgccatttaaggtaggagacgtgaataggtctcctacggtaggag 48906717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 2e-63; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 8 - 183
Target Start/End: Original strand, 39215639 - 39215814
Alignment:
Q  8 agaatgaaacaggtgatttagggttagcaattatcaatgatgataatcactttgtttattaannnnnnnnnnnnagaacttactagttgatcacttcttt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||| |||||||    
T  39215639 agaatgaaacaggtgatttagggttagcaattatcaatgatgataatcactttgtttattaatttttattttttagaacttactagttgatcgcttcttt 39215738  T
Q  108 ttgcttttgcttaccgtttatgactttgttgaatgttaacaaaaagagagaattgtaccttttgagtatatttgat 183  Q
    ||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215739 ttgtttttgtttaccgtttatcactttgttgaatgttaacaaaaagagagaattgtaccttttgagtatatttgat 39215814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 290 - 373
Target Start/End: Complemental strand, 43527622 - 43527539
Alignment:
Q  290 attgacgaagaacattgatcttactataatccctccacactagaatatttttcactttcttcaatctccaaactaaaacaaccc 373  Q
    ||||| ||||||||  |||| ||||||||||| | ||||||| ||||||||||||||||||||| |||  ||||||||||||||    
T  43527622 attgatgaagaacaccgatcatactataatcctttcacactataatatttttcactttcttcaacctctcaactaaaacaaccc 43527539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 196 - 331
Target Start/End: Original strand, 56395789 - 56395925
Alignment:
Q  196 ggtaggagacttgaataggtctcctacgataggagatattaaaaaatactg-annnnnnnnnnngtataacaaaaatgacacttgtcgctgttatattga 294  Q
    |||||||||||||||||||||||| |||  |||||| |||||||||||||| |            ||||||||||||||||  ||| || |||| |||||    
T  56395789 ggtaggagacttgaataggtctcccacgggaggagacattaaaaaatactgaatttttttttttttataacaaaaatgacatgtgttgcggttagattga 56395888  T
Q  295 cgaagaacattgatcttactataatccctccacacta 331  Q
    ||||||||| ||||||||| ||||||| || ||||||    
T  56395889 cgaagaacactgatcttaccataatccttctacacta 56395925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 262 - 370
Target Start/End: Complemental strand, 5827500 - 5827390
Alignment:
Q  262 taacaaaaatgacacttgtcgctgttatattgacgaagaacattgatcttactataatccctccacactagaatattt--ttcactttcttcaatctcca 359  Q
    ||||||||||||||  |||  || ||| | ||| ||||||||||| |||||||||||||||| ||||||||||| |||  | |||||||||||| |||      
T  5827500 taacaaaaatgacatatgttactattagagtgatgaagaacattggtcttactataatcccttcacactagaattttttctacactttcttcaacctctc 5827401  T
Q  360 aactaaaacaa 370  Q
    ||| |||||||    
T  5827400 aaccaaaacaa 5827390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 184 - 232
Target Start/End: Original strand, 52912265 - 52912313
Alignment:
Q  184 ggtgccgttttcggtaggagacttgaataggtctcctacgataggagat 232  Q
    |||||||||| | ||||||||| ||||||||||||||||| ||||||||    
T  52912265 ggtgccgtttacagtaggagacgtgaataggtctcctacggtaggagat 52912313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 5827568 - 5827514
Alignment:
Q  182 atggtgccgttttcggtaggagacttgaataggtctcctacgataggagatatta 236  Q
    |||||||||||| | ||||||||||||||| ||||| ||||| ||||||| ||||    
T  5827568 atggtgccgtttccagtaggagacttgaatgggtcttctacggtaggagacatta 5827514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 31181862 - 31181817
Alignment:
Q  178 tttgatggtgccgttttcggtaggagacttgaataggtctcctacg 223  Q
    |||| |||||||||||  |||||||||| |||||||||||||||||    
T  31181862 tttgttggtgccgtttaaggtaggagacgtgaataggtctcctacg 31181817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 182 - 353
Target Start/End: Complemental strand, 18924537 - 18924365
Alignment:
Q  182 atggtgccgttttcggtaggagacttgaataggtctcctacgataggagatattaaaaaatactgannnnnnnnnnngtataacaaaaatgacacttgtc 281  Q
    |||| ||||||| || |||||||||||||||||||||| ||| |||||||  ||||||| ||||||           ||||||||||||||||   ||||    
T  18924537 atggcgccgtttccgataggagacttgaataggtctcccacggtaggagactttaaaaagtactgatttttttttttgtataacaaaaatgacttgtgtc 18924438  T
Q  282 gctgttatattgacgaagaacattgatcttactataatccctccacactagaatatttt-tcactttcttcaa 353  Q
     |  ||  ||||| |||||||||||||||||||||||||||||||||||| ||| ||||  ||||||||||||    
T  18924437 accattgaattgatgaagaacattgatcttactataatccctccacactataattttttcacactttcttcaa 18924365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 264 - 344
Target Start/End: Complemental strand, 29372276 - 29372196
Alignment:
Q  264 acaaaaatgacacttgtcgctgttatattgacgaagaacattgatcttactataatccctccacactagaatatttttcac 344  Q
    |||||||||||| ||||| |  ||| ||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  29372276 acaaaaatgacatttgtcaccattagattgatgaagaacattgatcttactgtaatccctccacactagaatttttttcac 29372196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 259 - 344
Target Start/End: Complemental strand, 7509732 - 7509647
Alignment:
Q  259 gtataacaaaaatgacacttgtcgctgttatattgacgaagaacattgatcttactataatccctccacactagaatatttttcac 344  Q
    |||| |||||||||||| ||||| |  ||| ||||| |||||||| |||||||||| |||||||||||||||| ||| ||||||||    
T  7509732 gtatcacaaaaatgacatttgtcaccattagattgatgaagaacactgatcttactgtaatccctccacactataatttttttcac 7509647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 187 - 333
Target Start/End: Complemental strand, 35471684 - 35471538
Alignment:
Q  187 gccgttttcggtaggagacttgaataggtctcctacgataggagatattaaaaaatactgannnnnnnnnnngtataacaaaaatgacacttgtcgctgt 286  Q
    |||||||  |||||||||||||||||||||||| ||| ||||||| ||||||||  |||||            | ||||||||||||||  | | || ||    
T  35471684 gccgtttatggtaggagacttgaataggtctcccacggtaggagacattaaaaaggactgattttattttttttgtaacaaaaatgacatgtattgcggt 35471585  T
Q  287 tatattgacgaagaacattgatcttactataatccctccacactaga 333  Q
    || |||||||||||||  ||||||||| |||||||||| ||||||||    
T  35471584 tagattgacgaagaacgctgatcttaccataatccctctacactaga 35471538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 260 - 320
Target Start/End: Original strand, 41196379 - 41196439
Alignment:
Q  260 tataacaaaaatgacacttgtcgctgttatattgacgaagaacattgatcttactataatc 320  Q
    ||||||||||||||||  ||| || |||| |||||||||||||||||||||||| ||||||    
T  41196379 tataacaaaaatgacatgtgttgcggttagattgacgaagaacattgatcttaccataatc 41196439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 247
Target Start/End: Complemental strand, 36151764 - 36151715
Alignment:
Q  198 taggagacttgaataggtctcctacgataggagatattaaaaaatactga 247  Q
    ||||| |||||||||||||||| ||| ||||||||||||||||| |||||    
T  36151764 taggaaacttgaataggtctcccacggtaggagatattaaaaaagactga 36151715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 266 - 333
Target Start/End: Complemental strand, 36151689 - 36151622
Alignment:
Q  266 aaaaatgacacttgtcgctgttatattgacgaagaacattgatcttactataatccctccacactaga 333  Q
    ||||||||||  ||| || |||| |||||||||||||  ||||||||| |||||||||| ||||||||    
T  36151689 aaaaatgacatgtgttgcggttagattgacgaagaacgctgatcttaccataatccctcaacactaga 36151622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 246
Target Start/End: Original strand, 41196307 - 41196366
Alignment:
Q  187 gccgttttcggtaggagacttgaataggtctcctacgataggagatattaaaaaatactg 246  Q
    |||||||  |||||||||||||||||||||||| |||  |||||| ||||||||| ||||    
T  41196307 gccgtttatggtaggagacttgaataggtctcccacggaaggagacattaaaaaagactg 41196366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 245
Target Start/End: Complemental strand, 16050533 - 16050484
Alignment:
Q  196 ggtaggagacttgaataggtctcctacgataggagatattaaaaaatact 245  Q
    ||||||||| |||||||||||| ||||| || |||| |||||||||||||    
T  16050533 ggtaggagatttgaataggtcttctacggtatgagacattaaaaaatact 16050484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 262 - 370
Target Start/End: Original strand, 26048886 - 26048996
Alignment:
Q  262 taacaaaaatgacacttgtcgctgttatattgacgaagaacattgatcttactataatccctccacactagaatattttt--cactttcttcaatctcca 359  Q
    ||||||||||||||  |||  || ||| ||||| ||||||||||| |||||||||||||||||||||||||||| |||||  |||||||||||| |||      
T  26048886 taacaaaaatgacatatgttactattagattgatgaagaacattggtcttactataatccctccacactagaatttttttcacactttcttcaacctctc 26048985  T
Q  360 aactaaaacaa 370  Q
    ||| |||||||    
T  26048986 aaccaaaacaa 26048996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 260 - 333
Target Start/End: Complemental strand, 46409287 - 46409214
Alignment:
Q  260 tataacaaaaatgacacttgtcgctgttatattgacgaagaacattgatcttactataatccctccacactaga 333  Q
    ||||||||||||| ||  ||| || |||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  46409287 tataacaaaaatgtcatgtgttgcggttagattgacgaagaacactgatcttaccataatccctccacactaga 46409214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 32838199 - 32838256
Alignment:
Q  184 ggtgccgttttcggtaggagacttgaataggtctcctacgataggagatattaaaaaa 241  Q
    |||||||||| || |||||||||||||||||||||||||| ||||||| |||| ||||    
T  32838199 ggtgccgtttccgttaggagacttgaataggtctcctacggtaggagacattataaaa 32838256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 1503339 - 1503279
Alignment:
Q  187 gccgttttcggtaggagacttgaataggtctcctacgataggagatattaaaaaatactga 247  Q
    |||||||  |||||||||||||||||||||||| ||  ||||||| |||||||||||||||    
T  1503339 gccgtttatggtaggagacttgaataggtctcccacagtaggagacattaaaaaatactga 1503279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 262 - 333
Target Start/End: Complemental strand, 1503262 - 1503191
Alignment:
Q  262 taacaaaaatgacacttgtcgctgttatattgacgaagaacattgatcttactataatccctccacactaga 333  Q
    ||||||||||||||  ||| || |||| ||||||||| |||| ||||||||| |||||||||| ||||||||    
T  1503262 taacaaaaatgacatgtgttgcggttagattgacgaaaaacactgatcttaccataatccctctacactaga 1503191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 260 - 331
Target Start/End: Original strand, 6483876 - 6483947
Alignment:
Q  260 tataacaaaaatgacacttgtcgctgttatattgacgaagaacattgatcttactataatccctccacacta 331  Q
    ||||||||||||||||  ||| || |||| |||||||||||||| ||||||||| ||||||| || ||||||    
T  6483876 tataacaaaaatgacatgtgttgcggttagattgacgaagaacactgatcttaccataatccttctacacta 6483947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 182 - 241
Target Start/End: Original strand, 26048804 - 26048863
Alignment:
Q  182 atggtgccgttttcggtaggagacttgaataggtctcctacgataggagatattaaaaaa 241  Q
    |||||| ||||||||||||||||||||||| ||||||||||| || |||| |||| ||||    
T  26048804 atggtgtcgttttcggtaggagacttgaatgggtctcctacggtatgagacattataaaa 26048863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 260 - 331
Target Start/End: Complemental strand, 37997815 - 37997744
Alignment:
Q  260 tataacaaaaatgacacttgtcgctgttatattgacgaagaacattgatcttactataatccctccacacta 331  Q
    ||||||||||||||||  ||| || |||| |||||||||||||| ||||||||| ||||||| || ||||||    
T  37997815 tataacaaaaatgacatgtgttgcggttagattgacgaagaacactgatcttaccataatccttctacacta 37997744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 266 - 333
Target Start/End: Complemental strand, 47491546 - 47491479
Alignment:
Q  266 aaaaatgacacttgtcgctgttatattgacgaagaacattgatcttactataatccctccacactaga 333  Q
    ||||||||||  ||| || |||| |||||||||||||| |||||||| ||||||||||| ||||||||    
T  47491546 aaaaatgacatgtgttgcggttagattgacgaagaacactgatcttattataatccctctacactaga 47491479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 261 - 331
Target Start/End: Original strand, 33142238 - 33142308
Alignment:
Q  261 ataacaaaaatgacacttgtcgctgttatattgacgaagaacattgatcttactataatccctccacacta 331  Q
    |||||||||||||||  ||| || |||| |||||||||||||| ||||||||| ||||||| || ||||||    
T  33142238 ataacaaaaatgacatgtgttgcggttagattgacgaagaacactgatcttaccataatccttctacacta 33142308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 241
Target Start/End: Original strand, 35240596 - 35240650
Alignment:
Q  187 gccgttttcggtaggagacttgaataggtctcctacgataggagatattaaaaaa 241  Q
    ||||||| |||||||||||||||||| |||||||||| ||| ||| |||||||||    
T  35240596 gccgtttccggtaggagacttgaatatgtctcctacggtagaagacattaaaaaa 35240650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 37997894 - 37997834
Alignment:
Q  187 gccgttttcggtaggagacttgaataggtctcctacgataggagatattaaaaaatactga 247  Q
    |||||||  |||||||||||||||||||||||| |||  |||||| ||||||||| |||||    
T  37997894 gccgtttatggtaggagacttgaataggtctcccacgggaggagacattaaaaaagactga 37997834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 260 - 378
Target Start/End: Complemental strand, 329025 - 328904
Alignment:
Q  260 tataacaaaaatgacacttgtcgctgttatattgacgaagaacattgatcttactataatccctccacactagaatattttt---cactttcttcaatct 356  Q
    ||||||||||||||||  |||  |  ||| |||| |||||||||  ||| ||| |||||||||||||||| ||||| |||||   |||||||||||| ||    
T  329025 tataacaaaaatgacaagtgttaccattagattggcgaagaacaccgatattattataatccctccacacaagaattttttttcacactttcttcaacct 328926  T
Q  357 ccaaactaaaacaaccccagca 378  Q
       ||| |||||||||||||||    
T  328925 atcaaccaaaacaaccccagca 328904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 246
Target Start/End: Original strand, 2946758 - 2946817
Alignment:
Q  187 gccgttttcggtaggagacttgaataggtctcctacgataggagatattaaaaaatactg 246  Q
    |||||||  |||||||||||||||||||||||| |||  |||||| ||||||||| ||||    
T  2946758 gccgtttatggtaggagacttgaataggtctcccacgggaggagacattaaaaaagactg 2946817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 260 - 331
Target Start/End: Original strand, 2946834 - 2946905
Alignment:
Q  260 tataacaaaaatgacacttgtcgctgttatattgacgaagaacattgatcttactataatccctccacacta 331  Q
    ||||||||||||||||  ||| || |||| ||||||||| |||| ||||||||| ||||||| || ||||||    
T  2946834 tataacaaaaatgacatgtgttgcggttagattgacgaaaaacactgatcttaccataatccttctacacta 2946905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 2704849 - 2704808
Alignment:
Q  182 atggtgccgttttcggtaggagacttgaataggtctcctacg 223  Q
    |||||||||||| ||||||||||||| ||||||||| |||||    
T  2704849 atggtgccgtttccggtaggagacttaaataggtctactacg 2704808  T

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Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 6483806 - 6483866
Alignment:
Q  187 gccgttttcggtaggagacttgaataggtctcctacgataggagatattaaaaaatactga 247  Q
    |||||||  |||||||||||||||||||||||| ||   |||||| ||||||||| |||||    
T  6483806 gccgtttatggtaggagacttgaataggtctcccacaggaggagacattaaaaaagactga 6483866  T

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Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 319 - 376
Target Start/End: Original strand, 32838331 - 32838390
Alignment:
Q  319 tccctccacactagaatattttt--cactttcttcaatctccaaactaaaacaaccccag 376  Q
    ||||||||||||||||| |||||  |||||||||||| |||  ||| |||||||||||||    
T  32838331 tccctccacactagaatttttttcacactttcttcaacctctcaaccaaaacaaccccag 32838390  T

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Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 459 - 511
Target Start/End: Original strand, 32838432 - 32838484
Alignment:
Q  459 ctccgtcaatttcttgcacctcaacctccctttctctttcccttacctccgtc 511  Q
    |||||||| |||||| ||||||   |||||||||||||||||| |||||||||    
T  32838432 ctccgtcactttcttccacctctctctccctttctctttccctcacctccgtc 32838484  T

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Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 184 - 232
Target Start/End: Original strand, 35836999 - 35837047
Alignment:
Q  184 ggtgccgttttcggtaggagacttgaataggtctcctacgataggagat 232  Q
    ||||||||||  || ||||||| |||||| |||||||||||||||||||    
T  35836999 ggtgccgtttaaggcaggagacgtgaataagtctcctacgataggagat 35837047  T

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Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 37625632 - 37625680
Alignment:
Q  183 tggtgccgttttcggtaggagacttgaataggtctcctacgataggaga 231  Q
    ||||| ||||| ||||||||||  |||||||||||||||| ||||||||    
T  37625632 tggtggcgtttacggtaggagatgtgaataggtctcctaccataggaga 37625680  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 260 - 333
Target Start/End: Original strand, 7217013 - 7217086
Alignment:
Q  260 tataacaaaaatgacacttgtcgctgttatattgacgaagaacattgatcttactataatccctccacactaga 333  Q
    ||||||||||||| ||  ||| || |||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  7217013 tataacaaaaatggcatgtgttgcggttagattgacgaagaacactgatcttaccataatccctccacactaga 7217086  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 262 - 333
Target Start/End: Original strand, 2706901 - 2706972
Alignment:
Q  262 taacaaaaatgacacttgtcgctgttatattgacgaagaacattgatcttactataatccctccacactaga 333  Q
    ||||||||||||||  ||| || |||| |||||||||||||| ||||||||| |||||||||| ||||||||    
T  2706901 taacaaaaatgacatgtgttgcggttagattgacgaagaacactgatcttaccataatccctctacactaga 2706972  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 187 - 246
Target Start/End: Complemental strand, 35972021 - 35971962
Alignment:
Q  187 gccgttttcggtaggagacttgaataggtctcctacgataggagatattaaaaaatactg 246  Q
    |||||||  |||||||||||||||||||||||||||| ||||||| ||||||||| ||||    
T  35972021 gccgtttatggtaggagacttgaataggtctcctacggtaggagacattaaaaaagactg 35971962  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 2706821 - 2706878
Alignment:
Q  184 ggtgccgttttcggtaggagacttgaataggtctcctacgataggagatattaaaaaa 241  Q
    ||||||||||  || ||||||||||||||||||||| ||| ||||||| |||||||||    
T  2706821 ggtgccgtttatggcaggagacttgaataggtctcccacggtaggagacattaaaaaa 2706878  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 241
Target Start/End: Complemental strand, 14109714 - 14109669
Alignment:
Q  196 ggtaggagacttgaataggtctcctacgataggagatattaaaaaa 241  Q
    |||||||||||||||||||||||||||  ||||||| |||||||||    
T  14109714 ggtaggagacttgaataggtctcctacagtaggagacattaaaaaa 14109669  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 333
Target Start/End: Complemental strand, 35971949 - 35971876
Alignment:
Q  260 tataacaaaaatgacacttgtcgctgttatattgacgaagaacattgatcttactataatccctccacactaga 333  Q
    ||||||||||||||||  ||| || |||| |||||| ||||||| | ||||| | |||||||||| ||||||||    
T  35971949 tataacaaaaatgacatgtgttgcggttagattgacaaagaacactaatctttccataatccctctacactaga 35971876  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 324
Target Start/End: Complemental strand, 26420789 - 26420652
Alignment:
Q  187 gccgttttcggtaggagacttgaataggtctcctacgataggagatattaaaaaatactgannnnnnnnnnngtataacaaaaatgacacttgtcgctgt 286  Q
    |||||||  |||||||||||||||||||||||| ||| ||||||| | ||||||| ||||             | ||||||||||||||  ||| || ||    
T  26420789 gccgtttatggtaggagacttgaataggtctcccacggtaggagacaataaaaaagactgttttctttttttttgtaacaaaaatgacatgtgttgcggt 26420690  T
Q  287 tatattgacgaagaacattgatcttactataatccctc 324  Q
    || |||||||||||||| ||||||||| ||||||||||    
T  26420689 tagattgacgaagaacactgatcttaccataatccctc 26420652  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 260 - 331
Target Start/End: Original strand, 14799827 - 14799898
Alignment:
Q  260 tataacaaaaatgacacttgtcgctgttatattgacgaagaacattgatcttactataatccctccacacta 331  Q
    ||||||||||||||||  ||| |  |||| |||||||||||||| ||||||||| ||||||| || ||||||    
T  14799827 tataacaaaaatgacatgtgttgtggttagattgacgaagaacactgatcttaccataatccttctacacta 14799898  T

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Target: scaffold0015 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 260 - 333
Target Start/End: Complemental strand, 35771 - 35698
Alignment:
Q  260 tataacaaaaatgacacttgtcgctgttatattgacgaagaacattgatcttactataatccctccacactaga 333  Q
    |||||||||||||| |  ||| || |||| |||||||||||||||| ||||||| ||||||||||  |||||||    
T  35771 tataacaaaaatgaaatgtgttgcggttagattgacgaagaacattaatcttaccataatccctctgcactaga 35698  T

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