View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4849-Insertion-5 (Length: 460)
Name: NF4849-Insertion-5
Description: NF4849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4849-Insertion-5 |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 8 - 256
Target Start/End: Complemental strand, 5714622 - 5714374
Alignment:
| Q |
8 |
taaaattcacacttactctagaaggactaaagcttgcagctgcaattggtgctccaagcactgtgaacactgccaaccagagacctccaaggcgaagaaa |
107 |
Q |
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| T |
5714622 |
taaaattcacacttactctagaaggactaaagcttgcagctgcaattggtgctccaagcactgtgaacactgccaaccagagacctccaaggcgaagaaa |
5714523 |
T |
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| Q |
108 |
gaacgaccctggacccagttcgccccatgaatacagcattccatccttcaaagatgagtactcatttacctattagaccatgacatattccaagttagca |
207 |
Q |
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| T |
5714522 |
gaacgaccctggacccagttcgccccatgaatacagcattccatccttcaaagatgagtactcatttacctattagaccatgacatattccaagttagca |
5714423 |
T |
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| Q |
208 |
tgagatgttcaaagaaacacttttgagtgggacaatcatgttaactaat |
256 |
Q |
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| T |
5714422 |
tgagatgttcaaagaaacacttttgagtgggacaatcatgttaactaat |
5714374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 256 - 460
Target Start/End: Complemental strand, 5714074 - 5713870
Alignment:
| Q |
256 |
tgtcatcaaaattcaaaataaaacaatttattgctgccattcagtagttggctacatacataccggtctttgctcaaaaggaacttcaatttccaaccca |
355 |
Q |
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| T |
5714074 |
tgtcatcaaaattcaaaataaaacaatttattgctgccattcagtagttggctacatacataccggtctttgctcaaaaggaacttcaatttccaaccca |
5713975 |
T |
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| Q |
356 |
ggatcccagctacctcctgaagatccacttgtttctccattcatctcaccttttacggccttaactttaatggaaacctgttgagaaaattttgaagctc |
455 |
Q |
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| T |
5713974 |
ggatcccagctacctcctgaagatccacttgtttctccattcatctcaccttttacggccttaactttaatggaaacctgttgagaaaattttgaagctc |
5713875 |
T |
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| Q |
456 |
ttgga |
460 |
Q |
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||||| |
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| T |
5713874 |
ttgga |
5713870 |
T |
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